Tan0019110 (gene) Snake gourd v1

Overview


Name	Tan0019110
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Leucine zipper-EF-hand-containing transmembrane protein 1
Location	LG11: 9334514 .. 9336289 (+)
RNA-Seq Expression	Tan0019110
Synteny	Tan0019110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGATCGAGAGACGGGCGGCGGTGCCGACACTGAGGGCGTTTCACATGGCGATGGCGATGGTGGAAGAGTCTTTTTGTGATAAAGAGAAGGCAGTGAGTAATGAAGCTTTTTGAACGGAGAAGTGTGGGCGGCGGACGGCAAGCTCAAAGAGAGGATTAATACTGCTAAAATGGCGAAAACACGAGAAGCCATTGAAGACTTCATTATTTTTTTTGTTGTTGTTGTATTTTAATGTCAATATGGGGGTTTCACATTCTTTATATAATGCCACACCACACCAACCAGGGTTGCTGCTTGACCTTACTCACCAAGTTGGAGACGAATTAAATAATTATGGAGTTTAGATAATAATAGCGTAGGTTTTACTCTAACAAATCTTAGTTTTAATGACGGTATGGGATTTTACACGCTAGGCAATAATGACGGGCACTAAAAATTTCACTAAAAAAATGCACGCGCAAGTTTATTTTTGGAAAGGAATTTCTAAAGACCGTCATCAAAGTGAAAAATAATAATAATAAAGTATATTTATAATATTTACTGTATCTGGTCTCTCTCAAACCCTAAAGAAAAAGCCCCTTAGCCTCCCTGATCTCTCAAGACCTAACGAAATGGAGACTACACCCTCGATTCCTTTTTAGTTTCTCACTCTCTCACGATTGCTTTCCACTCACGGTTGTGAGGTGTTGTGACCTAGATCCAGCGGTACGACTTGAGAGGGAAGATTTAGATTTATGCAAAGTGGGACTAGAACTCCAATGGTAGCTACGACGAGTCCCTCTTATAACGAGTCCATTTTCTTCCATCTTCTCTGCATTTTTTCTTCCATATTTACGACATATCCTCCATAAAAGATTGTAGTGGTAATTTTTGTTTTACTCAATATTATTCTATAGCTTAGTAATACACTTAATTCCTTTTTTCCCTAAAACTTTGCAAGCGGGGGTCAATACATACTTAGATAGAAGTAAATTGTTACTAGGCAAATGAATCTATTGAAAATTGTGTAAAATTTTGTTAATTTGGGTTTAATTTTTTTTTTCTACAAGATAAATGAAGATGATAAATTAGTACAAACAAGGGGTGGAGTCCCTTTCTGAATCTGAGCTTCTTGAAGATTTTCGGGAGAATGGCATGCTTGGATTGCTCTCAGTAGAAGAAATGCAACAACAGGTTCCTTCGTCTTGACCCTTTTGCTAATTCATTATAAAATAATAGATGATATTTGTTACTCTAAAGTGTTTGCTACTTGTACTTTTAGTTTATACCATTATCTCCTTTTTTCTAGAAGTAGTTAAAACTTGAAACGAAAAATTATTGGATAGATTGTAACACATGTGATTTTATAAAATACGAACTTCAATGAGTATGCATAAAGAAAATTTCTTGTCATTAGATGTTTTAACTAGATCTTATAAATTGATATGAGAAGTTTCAAGATAGAGTTAGGTATTTTTATCTTGGGAATCTTGAACGCTTATGCAGATACTCAAACTTTGTGAGCTTAAGCATTTCTTTTTAACTTATATGGATTTTGCTTATATTTGGATTAATATCAAGAGTAGATTCAGTTTCTAGGTTGAAGTCCTATAAAAAATTATTTCTGCATCTAGAAGGAGGAGGAGAAAGAGGAAAAGGAACAAGCTAAAATGAAGGGATCTAAATCCAACAAAGAAGATATAGCTCTGAAGGAGTTAGTCAATCCGATGGCTAGAGAAGCTATAGATCAATCTCGAGCAAAAGCTTCAGAAAAAATAAGAGTAGCTCTATGA

mRNA sequence

ATGGTGATCGAGAGACGGGCGGCGGTGCCGACACTGAGGGCGTTTCACATGGCGATGGCGATGGTGGAAGAGTCTTTTTGTGATAAAGAGAAGGCAAAGGAGGAGGAGAAAGAGGAAAAGGAACAAGCTAAAATGAAGGGATCTAAATCCAACAAAGAAGATATAGCTCTGAAGGAGTTAGTCAATCCGATGGCTAGAGAAGCTATAGATCAATCTCGAGCAAAAGCTTCAGAAAAAATAAGAGTAGCTCTATGA

Coding sequence (CDS)

ATGGTGATCGAGAGACGGGCGGCGGTGCCGACACTGAGGGCGTTTCACATGGCGATGGCGATGGTGGAAGAGTCTTTTTGTGATAAAGAGAAGGCAAAGGAGGAGGAGAAAGAGGAAAAGGAACAAGCTAAAATGAAGGGATCTAAATCCAACAAAGAAGATATAGCTCTGAAGGAGTTAGTCAATCCGATGGCTAGAGAAGCTATAGATCAATCTCGAGCAAAAGCTTCAGAAAAAATAAGAGTAGCTCTATGA

Protein sequence

MVIERRAAVPTLRAFHMAMAMVEESFCDKEKAKEEEKEEKEQAKMKGSKSNKEDIALKELVNPMAREAIDQSRAKASEKIRVAL

Homology

[Close]

BLAST of Tan0019110 vs. NCBI nr
Match: XP_022157648.1 (mitochondrial proton/calcium exchanger protein-like [Momordica charantia])

HSP 1 Score: 68.2 bits (165), Expect = 3.9e-08
Identity = 38/47 (80.85%), Postives = 46/47 (97.87%), Query Frame = 0


Query: 33  KEEEKEEKEQAKMKGSKSNKEDIALKELVNPMAREAIDQSRAKASEK 80
           +EEEKEE+EQAKMK SKS++EDIA+KE+VNPMAREAI+Q+RAKASEK
Sbjct: 533 EEEEKEEEEQAKMKESKSSQEDIAMKEMVNPMAREAIEQARAKASEK 579

[Close]

BLAST of Tan0019110 vs. NCBI nr
Match: XP_038888776.1 (mitochondrial proton/calcium exchanger protein-like isoform X1 [Benincasa hispida])

HSP 1 Score: 67.8 bits (164), Expect = 5.2e-08
Identity = 38/47 (80.85%), Postives = 46/47 (97.87%), Query Frame = 0


Query: 33  KEEEKEEKEQAKMKGSKSNKEDIALKELVNPMAREAIDQSRAKASEK 80
           +EEEKEE+EQAK+K SKS++EDIALKE+VNPMAREAI+Q+RAKASEK
Sbjct: 534 EEEEKEEEEQAKLKESKSSQEDIALKEIVNPMAREAIEQARAKASEK 580

[Close]

BLAST of Tan0019110 vs. NCBI nr
Match: XP_038888777.1 (mitochondrial proton/calcium exchanger protein-like isoform X2 [Benincasa hispida])

HSP 1 Score: 67.8 bits (164), Expect = 5.2e-08
Identity = 38/47 (80.85%), Postives = 46/47 (97.87%), Query Frame = 0


Query: 33  KEEEKEEKEQAKMKGSKSNKEDIALKELVNPMAREAIDQSRAKASEK 80
           +EEEKEE+EQAK+K SKS++EDIALKE+VNPMAREAI+Q+RAKASEK
Sbjct: 534 EEEEKEEEEQAKLKESKSSQEDIALKEIVNPMAREAIEQARAKASEK 580

[Close]

BLAST of Tan0019110 vs. NCBI nr
Match: XP_022988695.1 (mitochondrial proton/calcium exchanger protein-like [Cucurbita maxima])

HSP 1 Score: 67.4 bits (163), Expect = 6.7e-08
Identity = 38/47 (80.85%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 33  KEEEKEEKEQAKMKGSKSNKEDIALKELVNPMAREAIDQSRAKASEK 80
           +EEEKEE+EQAKMK SKS++EDIALKE+VNPM REAI+Q+RAKASEK
Sbjct: 529 EEEEKEEEEQAKMKESKSSQEDIALKEMVNPMTREAIEQARAKASEK 575

[Close]

BLAST of Tan0019110 vs. NCBI nr
Match: XP_022927690.1 (mitochondrial proton/calcium exchanger protein-like [Cucurbita moschata])

HSP 1 Score: 67.4 bits (163), Expect = 6.7e-08
Identity = 38/47 (80.85%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 33  KEEEKEEKEQAKMKGSKSNKEDIALKELVNPMAREAIDQSRAKASEK 80
           +EEEKEE+EQAKMK SKS++EDIALKE+VNPM REAI+Q+RAKASEK
Sbjct: 529 EEEEKEEEEQAKMKESKSSQEDIALKEMVNPMTREAIEQARAKASEK 575

[Close]

BLAST of Tan0019110 vs. ExPASy TrEMBL
Match: A0A6J1DTX0 (Leucine zipper-EF-hand-containing transmembrane protein 1 OS=Momordica charantia OX=3673 GN=LOC111024307 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.9e-08
Identity = 38/47 (80.85%), Postives = 46/47 (97.87%), Query Frame = 0


Query: 33  KEEEKEEKEQAKMKGSKSNKEDIALKELVNPMAREAIDQSRAKASEK 80
           +EEEKEE+EQAKMK SKS++EDIA+KE+VNPMAREAI+Q+RAKASEK
Sbjct: 533 EEEEKEEEEQAKMKESKSSQEDIAMKEMVNPMAREAIEQARAKASEK 579

[Close]

BLAST of Tan0019110 vs. ExPASy TrEMBL
Match: A0A6J1JKA5 (Leucine zipper-EF-hand-containing transmembrane protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111485950 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.3e-08
Identity = 38/47 (80.85%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 33  KEEEKEEKEQAKMKGSKSNKEDIALKELVNPMAREAIDQSRAKASEK 80
           +EEEKEE+EQAKMK SKS++EDIALKE+VNPM REAI+Q+RAKASEK
Sbjct: 529 EEEEKEEEEQAKMKESKSSQEDIALKEMVNPMTREAIEQARAKASEK 575

[Close]

BLAST of Tan0019110 vs. ExPASy TrEMBL
Match: A0A6J1EPP6 (Leucine zipper-EF-hand-containing transmembrane protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111434509 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.3e-08
Identity = 38/47 (80.85%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 33  KEEEKEEKEQAKMKGSKSNKEDIALKELVNPMAREAIDQSRAKASEK 80
           +EEEKEE+EQAKMK SKS++EDIALKE+VNPM REAI+Q+RAKASEK
Sbjct: 529 EEEEKEEEEQAKMKESKSSQEDIALKEMVNPMTREAIEQARAKASEK 575

The following BLAST results are available for this feature:

BLAST of Tan0019110 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0019110 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157648.1	3.9e-08	80.85	mitochondrial proton/calcium exchanger protein-like [Momordica charantia]	[more]
XP_038888776.1	5.2e-08	80.85	mitochondrial proton/calcium exchanger protein-like isoform X1 [Benincasa hispid...	[more]
XP_038888777.1	5.2e-08	80.85	mitochondrial proton/calcium exchanger protein-like isoform X2 [Benincasa hispid...	[more]
XP_022988695.1	6.7e-08	80.85	mitochondrial proton/calcium exchanger protein-like [Cucurbita maxima]	[more]
XP_022927690.1	6.7e-08	80.85	mitochondrial proton/calcium exchanger protein-like [Cucurbita moschata]	[more]

BLAST of Tan0019110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DTX0	1.9e-08	80.85	Leucine zipper-EF-hand-containing transmembrane protein 1 OS=Momordica charantia...	[more]
A0A6J1JKA5	3.3e-08	80.85	Leucine zipper-EF-hand-containing transmembrane protein 1 OS=Cucurbita maxima OX...	[more]
A0A6J1EPP6	3.3e-08	80.85	Leucine zipper-EF-hand-containing transmembrane protein 1 OS=Cucurbita moschata ...	[more]

BLAST of Tan0019110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 22..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0019110.1	Tan0019110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005743	mitochondrial inner membrane
molecular_function	GO:0015297	antiporter activity
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0043022	ribosome binding