Tan0018692 (gene) Snake gourd v1

Overview
NameTan0018692
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG02: 6417252 .. 6417560 (-)
RNA-Seq ExpressionTan0018692
SyntenyTan0018692
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTGTTTCCTTGTTAAGTGTGGAGTATCACATCAAGTGCCAAGGATTCACAAAGATGATAGTAGTAAGAATCCAAAAAAAATTCAAAGAGATGGTACCGTTGGTGAGGCGCCTGAGGTAGTAAGGAAAGAGAGACGACATCGACGACGAGTAAGTAGTAAAGAGAGAAAGATGGTGACGACGTCGAGGTTACGACGAGGAGGGAGAGATGAGTTGGGTGGCTGGCTTGCAGCATGGTTGGAAGAGGCTGAAGGCCAAAGAGAGAAAGATGAAGTAAAGGAGTTGGAGGACACAACCAAGAGCTAG

mRNA sequence

ATGGCTTGTTTCCTTGTTAAGTGTGGAGTATCACATCAAGTGCCAAGGATTCACAAAGATGATAGTAGTAAGAATCCAAAAAAAATTCAAAGAGATGGTACCGTTGGTGAGGCGCCTGAGGTAGTAAGGAAAGAGAGACGACATCGACGACGAGTAAGTAGTAAAGAGAGAAAGATGGTGACGACGTCGAGGTTACGACGAGGAGGGAGAGATGAGTTGGGTGGCTGGCTTGCAGCATGGTTGGAAGAGGCTGAAGGCCAAAGAGAGAAAGATGAAGTAAAGGAGTTGGAGGACACAACCAAGAGCTAG

Coding sequence (CDS)

ATGGCTTGTTTCCTTGTTAAGTGTGGAGTATCACATCAAGTGCCAAGGATTCACAAAGATGATAGTAGTAAGAATCCAAAAAAAATTCAAAGAGATGGTACCGTTGGTGAGGCGCCTGAGGTAGTAAGGAAAGAGAGACGACATCGACGACGAGTAAGTAGTAAAGAGAGAAAGATGGTGACGACGTCGAGGTTACGACGAGGAGGGAGAGATGAGTTGGGTGGCTGGCTTGCAGCATGGTTGGAAGAGGCTGAAGGCCAAAGAGAGAAAGATGAAGTAAAGGAGTTGGAGGACACAACCAAGAGCTAG

Protein sequence

MACFLVKCGVSHQVPRIHKDDSSKNPKKIQRDGTVGEAPEVVRKERRHRRRVSSKERKMVTTSRLRRGGRDELGGWLAAWLEEAEGQREKDEVKELEDTTKS
Homology
BLAST of Tan0018692 vs. NCBI nr
Match: KAG6589009.1 (hypothetical protein SDJN03_17574, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 113.2 bits (282), Expect = 1.3e-21
Identity = 59/101 (58.42%), Postives = 73/101 (72.28%), Query Frame = 0

Query: 1   MACFLVKCGVSHQVPRIHKDDSSKNPKKIQRDGTVGEAPEVVRKERRHRRRVSSKERKMV 60
           MACF +KCG S QVPRI  DD SK P + Q+D TV EAP  +  +R+H++RV SKERK  
Sbjct: 1   MACFFLKCGGSRQVPRIQNDDGSKKPMETQQDDTVDEAPVEISNQRQHQQRVDSKERK-- 60

Query: 61  TTSRLRRGGRDELGGWLAAWLEEAEGQREKDEVKELEDTTK 102
            T+ L+RGG+ E  GWLAAWLEEAEG  EKDE+K L++  K
Sbjct: 61  -TTSLKRGGKSESSGWLAAWLEEAEGHGEKDEIKALKEAAK 98

BLAST of Tan0018692 vs. NCBI nr
Match: KGN43248.1 (hypothetical protein Csa_020351 [Cucumis sativus])

HSP 1 Score: 102.8 bits (255), Expect = 1.8e-18
Identity = 61/106 (57.55%), Postives = 77/106 (72.64%), Query Frame = 0

Query: 1   MACFLVKCGVSHQVPRIHKDDSSKNPKKIQRDG--TVGEAPEVVRKERRHRRRVSSKERK 60
           M CFL KCG  +QV RI +D  ++  +KI+RD    +GEAP+ ++  R+  RRV SKERK
Sbjct: 1   MNCFLAKCGTLNQVLRIREDGHNRKERKIERDDDIVIGEAPKTMKISRKGHRRVRSKERK 60

Query: 61  MV-TTSRLRRG--GRDELGGWLAAWLEEAEGQREKDEVKELEDTTK 102
           M+ ++SRL+R    R ELGGWLAAWLEEAEG+REKDEVKELE   K
Sbjct: 61  MMPSSSRLQRSQIERVELGGWLAAWLEEAEGEREKDEVKELEKEIK 106

BLAST of Tan0018692 vs. NCBI nr
Match: KAG6589008.1 (hypothetical protein SDJN03_17573, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 90.9 bits (224), Expect = 6.9e-15
Identity = 49/92 (53.26%), Postives = 65/92 (70.65%), Query Frame = 0

Query: 11  SHQVPRIHKDDSSKNPKKIQRDGTVGEAPEVVRKERRHRRRVSSKERKMVTTSRLRRGGR 70
           S QV RI+ D+ SK  +K QRD TVG+  E +  +RR +RRV +KE+K ++ +  +RG R
Sbjct: 128 SCQVSRIYDDEGSKKSRKTQRDDTVGDTLEAIGNKRRRQRRVDNKEQKTMSFTLRQRGER 187

Query: 71  DELGGWLAAWLEEAEGQREKDEVKELEDTTKS 103
           +ELGGWLAAWLEEAE   EKDE+K LE+   S
Sbjct: 188 NELGGWLAAWLEEAESHTEKDEIKALEEAAMS 219

BLAST of Tan0018692 vs. NCBI nr
Match: KAG6572110.1 (hypothetical protein SDJN03_28838, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 73.2 bits (178), Expect = 1.5e-09
Identity = 55/104 (52.88%), Postives = 65/104 (62.50%), Query Frame = 0

Query: 1   MACFLVKCGVSHQVPRIHKDDSSKNPKKIQRDG-TVGEAPEVV--RKERRHRRRVSSKER 60
           M CFLV CGVS Q  RI  D++ +  KK+ RDG  V E P     +K +R RRRV   ER
Sbjct: 1   MDCFLV-CGVSRQAMRIQADNNKRKVKKVVRDGIVVDETPTTTKGKKWQRRRRRVGDNER 60

Query: 61  KMVTTSRLRR--GGRDELGGWLAAWLEEAE-GQREKDEVKELED 99
           +   TSRL+R  GGR E GGWLAAWLEEAE  + EK   K LE+
Sbjct: 61  E---TSRLQRTDGGRVESGGWLAAWLEEAEMKELEKAHAKGLEN 100

BLAST of Tan0018692 vs. NCBI nr
Match: KAG7011763.1 (Ubiquitin-conjugating enzyme E2 28 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 57.0 bits (136), Expect = 1.1e-04
Identity = 45/89 (50.56%), Postives = 55/89 (61.80%), Query Frame = 0

Query: 16  RIHKDDSSKNPKKIQRDG-TVGEAPEVV--RKERRHRRRVSSKERKMVTTSRLRR--GGR 75
           RI  D++ +  KK+ RDG  V E P     +K +R RRRV   ER+   TSRL+R  GGR
Sbjct: 227 RIQADNNKRKVKKVVRDGIVVDETPTTTKGKKWQRRRRRVGDNERE---TSRLQRTDGGR 286

Query: 76  DELGGWLAAWLEEAE-GQREKDEVKELED 99
            E GGWLAAWLEEAE  + EK   K LE+
Sbjct: 287 VESGGWLAAWLEEAEMKELEKAHAKGLEN 312

BLAST of Tan0018692 vs. ExPASy TrEMBL
Match: A0A0A0K1A5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G011880 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 8.5e-19
Identity = 61/106 (57.55%), Postives = 77/106 (72.64%), Query Frame = 0

Query: 1   MACFLVKCGVSHQVPRIHKDDSSKNPKKIQRDG--TVGEAPEVVRKERRHRRRVSSKERK 60
           M CFL KCG  +QV RI +D  ++  +KI+RD    +GEAP+ ++  R+  RRV SKERK
Sbjct: 1   MNCFLAKCGTLNQVLRIREDGHNRKERKIERDDDIVIGEAPKTMKISRKGHRRVRSKERK 60

Query: 61  MV-TTSRLRRG--GRDELGGWLAAWLEEAEGQREKDEVKELEDTTK 102
           M+ ++SRL+R    R ELGGWLAAWLEEAEG+REKDEVKELE   K
Sbjct: 61  MMPSSSRLQRSQIERVELGGWLAAWLEEAEGEREKDEVKELEKEIK 106

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6589009.11.3e-2158.42hypothetical protein SDJN03_17574, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN43248.11.8e-1857.55hypothetical protein Csa_020351 [Cucumis sativus][more]
KAG6589008.16.9e-1553.26hypothetical protein SDJN03_17573, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6572110.11.5e-0952.88hypothetical protein SDJN03_28838, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7011763.11.1e-0450.56Ubiquitin-conjugating enzyme E2 28 [Cucurbita argyrosperma subsp. argyrosperma][more]
Match NameE-valueIdentityDescription
A0A0A0K1A58.5e-1957.55Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G011880 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 16..66
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 16..44

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0018692.1Tan0018692.1mRNA