Tan0018390 (gene) Snake gourd v1

Overview


Name	Tan0018390
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	RING-CH-type domain-containing protein
Location	LG03: 64748740 .. 64749983 (+)
RNA-Seq Expression	Tan0018390
Synteny	Tan0018390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTGTTGTCAATCTGATGAATCCAATTGGAATCTCCATTCCCACAAAATTCCCCTTCTTTTTCCTTTCCTCTTCTCTAAATTCCACCGAACCCATCTTCCATTTTGCTCTGTCGCTAAATTTCATGTCTTTTTTGAGTTTCTGATTCAGGGGTTCTCTTAAAAATGGCGGCTTTGGAGACGGCCGGAGCTGATTTGGAGGAAGGCGGCGGACGGCGAAGTGGGGTTGGTGAAGTGAAGGAGAGAGATTGTAGGATTTGCCATTTGGGGTTGGAGAGTAACAGCAATGAGTGTGGAATTGCAATTGAATTAGGCTGTTCTTGTAAGAATGATTTGGCTGCTGCCCACAAGCATTGTGCTGAGGCTTGGTTCAAAATCAGAGGAAACAAGTGAGTTTCATTTTCAATATCCCATCAACAAAATAATGCCCTTTTCATTTCATGATTAATCTTGTCATTTCTTCAAGAAATATAATGGCTCTGATGAATGATAATGATTTAAGTGAAGAAGGTGGGGAATTTTAATATAGAATTGCTGTTACTTGTGTTTTTTTTTTTTAGTGTTTTTGCAAAGCCTAAGATATAAAAAGGGAAAGTTAAAAAAATGCAATCTTAGTCAAAAGGAATGGAATGAAATAGAATAGGGAATTGAGTAGTGAAGCATTATTTTTTTAAAAAAATAATAATAATAATAAAATACAAAGCCTTGAACTTTGTCTTCACTTCATTAACTCTCTACCTTGTAATATTATTCTCTTGCCTTTCATAGACATTGGAATCCCTTCTTGCTTTTATTATTAAAGTGAATGTCTTTAATAAAGGGGAGATTACTGATTAGATATCTTGACCGTGCATTATTTGTTTATTTCTAAAATTATTGTAATTTGTCAATATGATTCCTAATAAATGTATATTTATTCTTTATTATTCAATTAGGAAGTGTAGGTATGTTTTTTCTTTGATGTAAATGATTTAATTTGAATGTGTTTGTTCTGGTTAGGACGTGTGAGATATGTCATTCTGTTGTGAAAAATGTCGTTGGAGCACACGAACTCGAACAAACGGAGCAGCTCCATGAGTCGAACAATGGGACGGTATCGACAGCGATGGTTGCAGCGTCGGTGGCTGCCGCTCCTGGAGGTGGCCGGAGCTTTTGGCAGGTTCACCGGGTACTGAATTTTCTTCTTGCTTGTATGGTATTTGCTTTTGTTATATCTTGGCTGTTTCATTTCAATGTGCCATCATAA

mRNA sequence

CCTGTTGTCAATCTGATGAATCCAATTGGAATCTCCATTCCCACAAAATTCCCCTTCTTTTTCCTTTCCTCTTCTCTAAATTCCACCGAACCCATCTTCCATTTTGCTCTGTCGCTAAATTTCATGTCTTTTTTGAGTTTCTGATTCAGGGGTTCTCTTAAAAATGGCGGCTTTGGAGACGGCCGGAGCTGATTTGGAGGAAGGCGGCGGACGGCGAAGTGGGGTTGGTGAAGTGAAGGAGAGAGATTGTAGGATTTGCCATTTGGGGTTGGAGAGTAACAGCAATGAGTGTGGAATTGCAATTGAATTAGGCTGTTCTTGTAAGAATGATTTGGCTGCTGCCCACAAGCATTGTGCTGAGGCTTGGTTCAAAATCAGAGGAAACAAGACGTGTGAGATATGTCATTCTGTTGTGAAAAATGTCGTTGGAGCACACGAACTCGAACAAACGGAGCAGCTCCATGAGTCGAACAATGGGACGGTATCGACAGCGATGGTTGCAGCGTCGGTGGCTGCCGCTCCTGGAGGTGGCCGGAGCTTTTGGCAGGTTCACCGGGTACTGAATTTTCTTCTTGCTTGTATGGTATTTGCTTTTGTTATATCTTGGCTGTTTCATTTCAATGTGCCATCATAA

Coding sequence (CDS)

ATGGCGGCTTTGGAGACGGCCGGAGCTGATTTGGAGGAAGGCGGCGGACGGCGAAGTGGGGTTGGTGAAGTGAAGGAGAGAGATTGTAGGATTTGCCATTTGGGGTTGGAGAGTAACAGCAATGAGTGTGGAATTGCAATTGAATTAGGCTGTTCTTGTAAGAATGATTTGGCTGCTGCCCACAAGCATTGTGCTGAGGCTTGGTTCAAAATCAGAGGAAACAAGACGTGTGAGATATGTCATTCTGTTGTGAAAAATGTCGTTGGAGCACACGAACTCGAACAAACGGAGCAGCTCCATGAGTCGAACAATGGGACGGTATCGACAGCGATGGTTGCAGCGTCGGTGGCTGCCGCTCCTGGAGGTGGCCGGAGCTTTTGGCAGGTTCACCGGGTACTGAATTTTCTTCTTGCTTGTATGGTATTTGCTTTTGTTATATCTTGGCTGTTTCATTTCAATGTGCCATCATAA

Protein sequence

MAALETAGADLEEGGGRRSGVGEVKERDCRICHLGLESNSNECGIAIELGCSCKNDLAAAHKHCAEAWFKIRGNKTCEICHSVVKNVVGAHELEQTEQLHESNNGTVSTAMVAASVAAAPGGGRSFWQVHRVLNFLLACMVFAFVISWLFHFNVPS

Homology

[Close]

BLAST of Tan0018390 vs. NCBI nr
Match: KAG6595366.1 (hypothetical protein SDJN03_11919, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 267.3 bits (682), Expect = 8.2e-68
Identity = 135/164 (82.32%), Postives = 143/164 (87.20%), Query Frame = 0


Query: 1   MAALETAGADLEEG-----GGRRSGVGEVK---ERDCRICHLGLESNSNECGIAIELGCS 60
           MAALETAG DLEEG     GGRR+  GEVK   ERDCRICHLGLESNS+ECG AIELGCS
Sbjct: 1   MAALETAGVDLEEGGRGGDGGRRAEAGEVKVHSERDCRICHLGLESNSSECGTAIELGCS 60

Query: 61  CKNDLAAAHKHCAEAWFKIRGNKTCEICHSVVKNVVGAHELEQTEQLHESNNGTVSTAMV 120
           CKNDLAAAHKHCAEAWFKIRGNKTCEICHS+V+N VG HELEQ EQLHE NNGT+ST  V
Sbjct: 61  CKNDLAAAHKHCAEAWFKIRGNKTCEICHSIVQN-VGVHELEQMEQLHEFNNGTLSTTTV 120

Query: 121 AASVAAAPGGGRSFWQVHRVLNFLLACMVFAFVISWLFHFNVPS 157
           AASVAA+P GGR FWQVHRVLNFLLAC+VFAFVISWLFHFN+ S
Sbjct: 121 AASVAASPDGGRRFWQVHRVLNFLLACIVFAFVISWLFHFNMRS 163

[Close]

BLAST of Tan0018390 vs. NCBI nr
Match: XP_023517920.1 (uncharacterized protein LOC111781512 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 265.8 bits (678), Expect = 2.4e-67
Identity = 135/164 (82.32%), Postives = 142/164 (86.59%), Query Frame = 0


Query: 1   MAALETAGADLEEG-----GGRRSGVGEVK---ERDCRICHLGLESNSNECGIAIELGCS 60
           MAALETAG DLEEG     GGRR+  GEVK   ERDCRICHLGLESNS+ECG AIELGCS
Sbjct: 1   MAALETAGVDLEEGGRGGHGGRRAEAGEVKVHSERDCRICHLGLESNSSECGTAIELGCS 60

Query: 61  CKNDLAAAHKHCAEAWFKIRGNKTCEICHSVVKNVVGAHELEQTEQLHESNNGTVSTAMV 120
           CKNDLAAAHKHCAEAWFKIRGNKTCEICHS+V+NV G HELEQ EQLHE NNGT+ST  V
Sbjct: 61  CKNDLAAAHKHCAEAWFKIRGNKTCEICHSIVQNVGGVHELEQMEQLHELNNGTLSTTTV 120

Query: 121 AASVAAAPGGGRSFWQVHRVLNFLLACMVFAFVISWLFHFNVPS 157
           AASV AAP GGR FWQVHRVLNFLLAC+VFAFVISWLFHFN+ S
Sbjct: 121 AASV-AAPDGGRRFWQVHRVLNFLLACIVFAFVISWLFHFNMRS 163

[Close]

BLAST of Tan0018390 vs. NCBI nr
Match: KAG7027374.1 (hypothetical protein SDJN02_11386 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 264.6 bits (675), Expect = 5.3e-67
Identity = 134/164 (81.71%), Postives = 142/164 (86.59%), Query Frame = 0


Query: 1   MAALETAGADLEEG-----GGRRSGVGEVK---ERDCRICHLGLESNSNECGIAIELGCS 60
           MAALETAG DLEEG     GGR +  GEVK   ERDCRICHLGLESNS+ECG AIELGCS
Sbjct: 1   MAALETAGVDLEEGGRGGDGGRGAEAGEVKVHSERDCRICHLGLESNSSECGTAIELGCS 60

Query: 61  CKNDLAAAHKHCAEAWFKIRGNKTCEICHSVVKNVVGAHELEQTEQLHESNNGTVSTAMV 120
           CKNDLAAAHKHCAEAWFKIRGNKTCEICHS+V+N VG HELEQ EQLHE NNGT+ST  V
Sbjct: 61  CKNDLAAAHKHCAEAWFKIRGNKTCEICHSIVQN-VGVHELEQMEQLHEFNNGTLSTTTV 120

Query: 121 AASVAAAPGGGRSFWQVHRVLNFLLACMVFAFVISWLFHFNVPS 157
           AASVAA+P GGR FWQVHRVLNFLLAC+VFAFVISWLFHFN+ S
Sbjct: 121 AASVAASPDGGRRFWQVHRVLNFLLACIVFAFVISWLFHFNMRS 163

[Close]

BLAST of Tan0018390 vs. NCBI nr
Match: XP_038883458.1 (uncharacterized protein LOC120074413 [Benincasa hispida])

HSP 1 Score: 260.0 bits (663), Expect = 1.3e-65
Identity = 134/166 (80.72%), Postives = 140/166 (84.34%), Query Frame = 0


Query: 1   MAALETAGADLEEG-----GGRRSGVG-EVK----ERDCRICHLGLESNSNECGIAIELG 60
           MAALETAGADLE+G       R SGVG EVK    ERDCRICHLGL SNSNE G+ IELG
Sbjct: 1   MAALETAGADLEKGWRQTAAERGSGVGEEVKVNNLERDCRICHLGLVSNSNEFGVGIELG 60

Query: 61  CSCKNDLAAAHKHCAEAWFKIRGNKTCEICHSVVKNVVGAHELEQTEQLHESNNGTVSTA 120
           C CKNDL+ AHKHCAEAWFKIRGNKTCEICHS+V+NV+   E EQTEQLHESNNGTVSTA
Sbjct: 61  CCCKNDLSTAHKHCAEAWFKIRGNKTCEICHSIVRNVMVVREPEQTEQLHESNNGTVSTA 120

Query: 121 MVAASVAAAPGGGRSFWQVHRVLNFLLACMVFAFVISWLFHFNVPS 157
            VAASVAA P GGRSFW VHRVLNFLLACMVFAFVISWLFHFNVPS
Sbjct: 121 TVAASVAATPSGGRSFWHVHRVLNFLLACMVFAFVISWLFHFNVPS 166

[Close]

BLAST of Tan0018390 vs. NCBI nr
Match: XP_022151515.1 (uncharacterized protein LOC111019441, partial [Momordica charantia])

HSP 1 Score: 251.5 bits (641), Expect = 4.7e-63
Identity = 126/161 (78.26%), Postives = 134/161 (83.23%), Query Frame = 0


Query: 1   MAALETAG-ADLEEG----GGRRSGVGEVKERDCRICHLGLESNSNECGIAIELGCSCKN 60
           +AA++T G ADLE+G    GG R    E  ERDCRICHLGLES+S+ECGI IELGCSCKN
Sbjct: 18  IAAVDTPGSADLEQGRCSSGGERR--REAAERDCRICHLGLESSSDECGIGIELGCSCKN 77

Query: 61  DLAAAHKHCAEAWFKIRGNKTCEICHSVVKNVVGAHELEQTEQLHESNNGTVSTAMVAAS 120
           DL AAHKHCAEAWFKIRGNKTCEICHSVV NV+GAHE+E  EQL ESNN TVST  VA S
Sbjct: 78  DLGAAHKHCAEAWFKIRGNKTCEICHSVVSNVIGAHEVEPVEQLSESNNATVSTTTVATS 137

Query: 121 VAAAPGGGRSFWQVHRVLNFLLACMVFAFVISWLFHFNVPS 157
           V   P GGRSFWQVHRVLNFLLACMVFAFVISWLFHFNVPS
Sbjct: 138 VTGGPNGGRSFWQVHRVLNFLLACMVFAFVISWLFHFNVPS 176

[Close]

BLAST of Tan0018390 vs. ExPASy TrEMBL
Match: A0A6J1DBE4 (uncharacterized protein LOC111019441 OS=Momordica charantia OX=3673 GN=LOC111019441 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 2.3e-63
Identity = 126/161 (78.26%), Postives = 134/161 (83.23%), Query Frame = 0


Query: 1   MAALETAG-ADLEEG----GGRRSGVGEVKERDCRICHLGLESNSNECGIAIELGCSCKN 60
           +AA++T G ADLE+G    GG R    E  ERDCRICHLGLES+S+ECGI IELGCSCKN
Sbjct: 18  IAAVDTPGSADLEQGRCSSGGERR--REAAERDCRICHLGLESSSDECGIGIELGCSCKN 77

Query: 61  DLAAAHKHCAEAWFKIRGNKTCEICHSVVKNVVGAHELEQTEQLHESNNGTVSTAMVAAS 120
           DL AAHKHCAEAWFKIRGNKTCEICHSVV NV+GAHE+E  EQL ESNN TVST  VA S
Sbjct: 78  DLGAAHKHCAEAWFKIRGNKTCEICHSVVSNVIGAHEVEPVEQLSESNNATVSTTTVATS 137

Query: 121 VAAAPGGGRSFWQVHRVLNFLLACMVFAFVISWLFHFNVPS 157
           V   P GGRSFWQVHRVLNFLLACMVFAFVISWLFHFNVPS
Sbjct: 138 VTGGPNGGRSFWQVHRVLNFLLACMVFAFVISWLFHFNVPS 176

[Close]

BLAST of Tan0018390 vs. ExPASy TrEMBL
Match: A0A6J1CWG7 (uncharacterized protein LOC111015024 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111015024 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.7e-50
Identity = 103/144 (71.53%), Postives = 118/144 (81.94%), Query Frame = 0


Query: 19  SGVGEVK------ERDCRICHLGLESNSNECGIAIELGCSCKNDLAAAHKHCAEAWFKIR 78
           +G+ E+K      ERDCRICHLGLESNS E GI IELGCSCK+DLAAAHKHCAE WFKIR
Sbjct: 91  NGITEIKVHLAKVERDCRICHLGLESNSQESGIPIELGCSCKDDLAAAHKHCAETWFKIR 150

Query: 79  GNKTCEICHSVVKNVVGAHELEQTEQLHESNNGTVSTAMVAASVAAAPGGGRSFWQVHRV 138
           GNKTCEICHS+ +N++G HE+E TEQ  ESNN + STA VAAS+ ++    +SFW+ HR 
Sbjct: 151 GNKTCEICHSIARNILGPHEVELTEQSTESNNAS-STAAVAASIPSS--DSQSFWRGHRF 210

Query: 139 LNFLLACMVFAFVISWLFHFNVPS 157
           LNFLLACMVFAFVISWLFHFNVPS
Sbjct: 211 LNFLLACMVFAFVISWLFHFNVPS 231

[Close]

BLAST of Tan0018390 vs. ExPASy TrEMBL
Match: A0A0B0MSH9 (E3 ubiquitin-protein ligase MARCH2 OS=Gossypium arboreum OX=29729 GN=LOC108455880 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 1.1e-49
Identity = 103/144 (71.53%), Postives = 115/144 (79.86%), Query Frame = 0


Query: 19  SGVGEVK------ERDCRICHLGLESNSNECGIAIELGCSCKNDLAAAHKHCAEAWFKIR 78
           SG  E+K      E+DCRICHLGLESNS+E G  IELGCSCK+DLAAAHKHCAEAWFKIR
Sbjct: 84  SGANELKLHLAKVEKDCRICHLGLESNSHESGAPIELGCSCKDDLAAAHKHCAEAWFKIR 143

Query: 79  GNKTCEICHSVVKNVVGAHELEQTEQLHESNNGTVSTAMVAASVAAAPGGGRSFWQVHRV 138
           GNKTCEICHS+ +NVVG +E+E TEQ +E+N+   STA  A S AA+    RSFW  HR 
Sbjct: 144 GNKTCEICHSIARNVVGVNEVESTEQPNETNS---STATTAVSGAASYTESRSFWHGHRF 203

Query: 139 LNFLLACMVFAFVISWLFHFNVPS 157
           LNFLLACMVFAFVISWLFHFNVPS
Sbjct: 204 LNFLLACMVFAFVISWLFHFNVPS 224

[Close]

BLAST of Tan0018390 vs. ExPASy TrEMBL
Match: A0A2P5YEN9 (RING-CH-type domain-containing protein OS=Gossypium barbadense OX=3634 GN=ES319_A09G171900v1 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 1.1e-49
Identity = 103/144 (71.53%), Postives = 115/144 (79.86%), Query Frame = 0


Query: 19  SGVGEVK------ERDCRICHLGLESNSNECGIAIELGCSCKNDLAAAHKHCAEAWFKIR 78
           SG  E+K      E+DCRICHLGLESNS+E G  IELGCSCK+DLAAAHKHCAEAWFKIR
Sbjct: 84  SGANELKLHLAKVEKDCRICHLGLESNSHESGAPIELGCSCKDDLAAAHKHCAEAWFKIR 143

Query: 79  GNKTCEICHSVVKNVVGAHELEQTEQLHESNNGTVSTAMVAASVAAAPGGGRSFWQVHRV 138
           GNKTCEICHS+ +NVVG +E+E TEQ +E+N+   STA  A S AA+    RSFW  HR 
Sbjct: 144 GNKTCEICHSIARNVVGVNEVESTEQPNETNS---STATTAVSGAASYTESRSFWHGHRF 203

Query: 139 LNFLLACMVFAFVISWLFHFNVPS 157
           LNFLLACMVFAFVISWLFHFNVPS
Sbjct: 204 LNFLLACMVFAFVISWLFHFNVPS 224

[Close]

BLAST of Tan0018390 vs. ExPASy TrEMBL
Match: A0A5D2JJR0 (RING-CH-type domain-containing protein OS=Gossypium tomentosum OX=34277 GN=ES332_D09G189600v1 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 1.1e-49
Identity = 101/144 (70.14%), Postives = 116/144 (80.56%), Query Frame = 0


Query: 19  SGVGEVK------ERDCRICHLGLESNSNECGIAIELGCSCKNDLAAAHKHCAEAWFKIR 78
           SG  E+K      E+DCRICHLGLESNS+E G  IELGCSCK+DLAAAHKHCAEAWFKIR
Sbjct: 84  SGANELKLHLAKVEKDCRICHLGLESNSHESGAPIELGCSCKDDLAAAHKHCAEAWFKIR 143

Query: 79  GNKTCEICHSVVKNVVGAHELEQTEQLHESNNGTVSTAMVAASVAAAPGGGRSFWQVHRV 138
           GNKTCEICHS+ +NVVG +E+E TEQ +E+N+ T +TA++    AA+    RSFW  HR 
Sbjct: 144 GNKTCEICHSIARNVVGVNEVESTEQPNETNSSTATTAVLG---AASYTESRSFWHGHRF 203

Query: 139 LNFLLACMVFAFVISWLFHFNVPS 157
           LNFLLACMVFAFVISWLFHFNVPS
Sbjct: 204 LNFLLACMVFAFVISWLFHFNVPS 224

[Close]

BLAST of Tan0018390 vs. TAIR 10
Match: AT5G05830.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 171.4 bits (433), Expect = 5.7e-43
Identity = 83/131 (63.36%), Postives = 96/131 (73.28%), Query Frame = 0


Query: 26  ERDCRICHLGLESNSNECGIAIELGCSCKNDLAAAHKHCAEAWFKIRGNKTCEICHSVVK 85
           ERDCRICH+ L++ + E G+ IELGCSCK DLAAAHKHCAE WFKI+GNK CE+C S+  
Sbjct: 76  ERDCRICHMSLDAANLESGVPIELGCSCKADLAAAHKHCAETWFKIKGNKICEVCGSIAG 135

Query: 86  NVVGAHELEQTEQLHESNNGTVSTAMVAASVAAAPGGGRSFWQVHRVLNFLLACMVFAFV 145
           NVVG+ E+E  E  +E+N     T   +         GRSFWQ HR LNFLLACMVFAFV
Sbjct: 136 NVVGSVEVESEESRNEANGVENLTLRTSGPRLVE---GRSFWQGHRFLNFLLACMVFAFV 195

Query: 146 ISWLFHFNVPS 157
           ISWLFHFNVPS
Sbjct: 196 ISWLFHFNVPS 203

[Close]

BLAST of Tan0018390 vs. TAIR 10
Match: AT2G37950.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 143.7 bits (361), Expect = 1.3e-34
Identity = 75/136 (55.15%), Postives = 92/136 (67.65%), Query Frame = 0


Query: 26  ERDCRICHLGLESNSNECGIAIELGCSCKNDLAAAHKHCAEAWFKIRGNKTCEICHSVVK 85
           E+DCRICHLG+E++    G AIELGCSCK+DLA AH+ CAE WFKI+G+KTCEIC SV +
Sbjct: 81  EKDCRICHLGVETSG---GGAIELGCSCKDDLAVAHRQCAETWFKIKGDKTCEICQSVAR 140

Query: 86  NVVGAHEL-EQTEQLHESNNGTVSTAMVAASVAAAPGGGRSF----WQVHRVLNFLLACM 145
           NV GA+E+   T +  E  NG           AA  GGG +     WQ  RV+N +LACM
Sbjct: 141 NVGGANEMVGSTMEERELRNG--------EETAAGEGGGATVVENRWQPQRVVNLVLACM 200

Query: 146 VFAFVISWLFHFNVPS 157
           VF F ISW+FHF+V S
Sbjct: 201 VFGFFISWIFHFHVSS 205

[Close]

BLAST of Tan0018390 vs. TAIR 10
Match: AT5G01070.2 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 142.1 bits (357), Expect = 3.7e-34
Identity = 71/132 (53.79%), Postives = 87/132 (65.91%), Query Frame = 0


Query: 26  ERDCRICHLGLESNSNECGIAIELGCSCKNDLAAAHKHCAEAWFKIRGNKTCEICHSVVK 85
           E+DCRICHLGLES+ +ECG  + LGCSCK+DL   HK CA+ WFKI+GNKTCEIC S+ +
Sbjct: 75  EKDCRICHLGLESSRHECGDPMVLGCSCKDDLGYVHKQCADTWFKIKGNKTCEICRSIAQ 134

Query: 86  NVVGA-HELEQTEQLHESNNGTVSTAMVAASVAAAPGGGRSFWQVHRVLNFLLACMVFAF 145
           N     +E+ QT    E+N   V        VA +    R   + +R LNFLL CMV AF
Sbjct: 135 NFFKVDNEIGQTTV--ETNVDDVEAGNTPTMVATSDSDDRRLCRGNRFLNFLLTCMVCAF 194

Query: 146 VISWLFHFNVPS 157
           VISW FHFN+PS
Sbjct: 195 VISWFFHFNLPS 204

[Close]

BLAST of Tan0018390 vs. TAIR 10
Match: AT5G59000.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 112.8 bits (281), Expect = 2.4e-25
Identity = 69/159 (43.40%), Postives = 80/159 (50.31%), Query Frame = 0


Query: 27  RDCRICHLGLESNSNE-------------------------------CGIAIELGCSCKN 86
           RDCRICHL LE+N                                   G+ ++LGCSCK 
Sbjct: 79  RDCRICHLPLETNKEAEDEDEEEEDDSDDDEDEEDEEEEEEEEEEEYYGLPLQLGCSCKG 138

Query: 87  DLAAAHKHCAEAWFKIRGNKTCEICHSVVKNVVGAHELEQTEQLHESNNGTVSTAMVAAS 146
           DL  AH  CAE WFKI+GN TCEIC ++  NV G    EQ+    ES   T S A  AA 
Sbjct: 139 DLGVAHSKCAETWFKIKGNMTCEICGAMALNVAG----EQSNP--ESTASTHSQA--AAG 198

Query: 147 VAAAPGGGRSFWQVHRVLNFLLACMVFAFVISWLFHFNV 155
            +      R  W    V+NFLLA MVFAFV+SWLFHF V
Sbjct: 199 QSLTQTEPRGIWHGRPVMNFLLAAMVFAFVVSWLFHFKV 229

[Close]

BLAST of Tan0018390 vs. TAIR 10
Match: AT2G34200.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 84.0 bits (206), Expect = 1.2e-16
Identity = 41/76 (53.95%), Postives = 46/76 (60.53%), Query Frame = 0


Query: 19  SGVGEVKERDCRICHLGLESNSNECG-------IAIELGCSCKNDLAAAHKHCAEAWFKI 78
           SGVG   ER CRICH G + +    G         IE+GC CKN+L  AH HCAEAWFK+
Sbjct: 95  SGVG---ERICRICHFGSDQSPEASGDDKSVSPELIEIGCKCKNELGLAHFHCAEAWFKL 154

Query: 79  RGNKTCEICHSVVKNV 88
           RGN  CEIC    KNV
Sbjct: 155 RGNSVCEICGCTAKNV 167

The following BLAST results are available for this feature:

BLAST of Tan0018390 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0018390 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6595366.1	8.2e-68	82.32	hypothetical protein SDJN03_11919, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023517920.1	2.4e-67	82.32	uncharacterized protein LOC111781512 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
KAG7027374.1	5.3e-67	81.71	hypothetical protein SDJN02_11386 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_038883458.1	1.3e-65	80.72	uncharacterized protein LOC120074413 [Benincasa hispida]	[more]
XP_022151515.1	4.7e-63	78.26	uncharacterized protein LOC111019441, partial [Momordica charantia]	[more]

BLAST of Tan0018390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DBE4	2.3e-63	78.26	uncharacterized protein LOC111019441 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A6J1CWG7	1.7e-50	71.53	uncharacterized protein LOC111015024 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A0B0MSH9	1.1e-49	71.53	E3 ubiquitin-protein ligase MARCH2 OS=Gossypium arboreum OX=29729 GN=LOC10845588...	[more]
A0A2P5YEN9	1.1e-49	71.53	RING-CH-type domain-containing protein OS=Gossypium barbadense OX=3634 GN=ES319_...	[more]
A0A5D2JJR0	1.1e-49	70.14	RING-CH-type domain-containing protein OS=Gossypium tomentosum OX=34277 GN=ES332...	[more]

BLAST of Tan0018390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G05830.1	5.7e-43	63.36	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT2G37950.1	1.3e-34	55.15	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G01070.2	3.7e-34	53.79	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G59000.1	2.4e-25	43.40	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT2G34200.1	1.2e-16	53.95	RING/FYVE/PHD zinc finger superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011016	Zinc finger, RING-CH-type	SMART	SM00744	ringv_2	coord: 28..81 e-value: 3.7E-14 score: 63.0
IPR011016	Zinc finger, RING-CH-type	PFAM	PF12906	RINGv	coord: 29..80 e-value: 2.2E-8 score: 34.1
IPR011016	Zinc finger, RING-CH-type	PROSITE	PS51292	ZF_RING_CH	coord: 21..87 score: 17.316103
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 16..90 e-value: 1.9E-14 score: 55.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR46214	ZINC FINGER, RING-CH-TYPE	coord: 24..156
None	No IPR available	PANTHER	PTHR46214:SF5	OS01G0850200 PROTEIN	coord: 24..156
None	No IPR available	CDD	cd16495	RING_CH-C4HC3_MARCH	coord: 29..81 e-value: 4.05224E-12 score: 55.7964
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 23..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0018390.1	Tan0018390.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008270	zinc ion binding