Tan0018115 (gene) Snake gourd v1

Overview


Name	Tan0018115
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	RNase H domain-containing protein
Location	LG07: 40729259 .. 40729643 (+)
RNA-Seq Expression	Tan0018115
Synteny	Tan0018115

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGAGGGTTGGCAACCGCCGAGCATGGGCGGATGGAAATTAAACACAAATGCATCCTGGGATTCAACTTCAAACAGTGGAGGTATGGGTTGGATTATGCGAGACTGGACAGGGAGCATAGTTCGAGCAGGTCATCAGTTTATCACTCACAATTGGCCTATTACGATTATGGAGTTATTTGGTATTATCAAATGGTTGGATTCAGTTCCGGAGAATTCTATCCCTCTTATTGTTGAATCTGACTCTTGGGAGGCAATTCAGCTAATCAATGGAAATCGGAAGGATCACATTGAAGCCAAAGACTTTGCTAAGGTGATCAGACAAATGACAAGTAATTGGATAGATATTTCCTTTTGCTTTCAACGTCGGACTACAAATTTAG

mRNA sequence

ATGGTTGAGGGTTGGCAACCGCCGAGCATGGGCGGATGGAAATTAAACACAAATGCATCCTGGGATTCAACTTCAAACAGTGGAGGTATGGGTTGGATTATGCGAGACTGGACAGGGAGCATAGTTCGAGCAGGTCATCAGTTTATCACTCACAATTGGCCTATTACGATTATGGAGTTATTTGGTATTATCAAATGGTTGGATTCAGTTCCGGAGAATTCTATCCCTCTTATTGTTGAATCTGACTCTTGGGAGGCAATTCAGCTAATCAATGGAAATCGGAAGGATCACATTGAAGCCAAAGACTTTGCTAAGATATTTCCTTTTGCTTTCAACGTCGGACTACAAATTTAG

Coding sequence (CDS)

ATGGTTGAGGGTTGGCAACCGCCGAGCATGGGCGGATGGAAATTAAACACAAATGCATCCTGGGATTCAACTTCAAACAGTGGAGGTATGGGTTGGATTATGCGAGACTGGACAGGGAGCATAGTTCGAGCAGGTCATCAGTTTATCACTCACAATTGGCCTATTACGATTATGGAGTTATTTGGTATTATCAAATGGTTGGATTCAGTTCCGGAGAATTCTATCCCTCTTATTGTTGAATCTGACTCTTGGGAGGCAATTCAGCTAATCAATGGAAATCGGAAGGATCACATTGAAGCCAAAGACTTTGCTAAGATATTTCCTTTTGCTTTCAACGTCGGACTACAAATTTAG

Protein sequence

MVEGWQPPSMGGWKLNTNASWDSTSNSGGMGWIMRDWTGSIVRAGHQFITHNWPITIMELFGIIKWLDSVPENSIPLIVESDSWEAIQLINGNRKDHIEAKDFAKIFPFAFNVGLQI

Homology

[Close]

BLAST of Tan0018115 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 82.4 bits (202), Expect = 2.8e-12
Identity = 39/96 (40.62%), Postives = 62/96 (64.58%), Query Frame = 0


Query: 5   WQPPSMGGWKLNTNASWDSTSNSGGMGWIMRDWTGSIVRAGHQFITHNWPITIMELFGII 64
           W+PP+   WKLNTNA+W + +N+GG+GWI+RD  G +++A  + I     IT +E+  I 
Sbjct: 79  WKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNITYLEVMAIC 138

Query: 65  KWLDSV-PENSIPLIVESDSWEAIQLINGNRKDHIE 100
           + L ++  E+  P+ +ESDS EAI L++   +D  E
Sbjct: 139 EGLRAIRQEHCRPIHLESDSLEAIHLLHRQCQDQTE 174

[Close]

BLAST of Tan0018115 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 77.0 bits (188), Expect = 1.2e-10
Identity = 36/94 (38.30%), Postives = 58/94 (61.70%), Query Frame = 0


Query: 5   WQPPSMGGWKLNTNASWDSTSNSGGMGWIMRDWTGSIVRAGHQFITHNWPITIMELFGII 64
           W+PP M  W LN +ASW  +++ GG+GWI+R W G IV AG++F+     + ++E   I+
Sbjct: 71  WEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAIL 130

Query: 65  KWLDSVPENSI--PLIVESDSWEAIQLINGNRKD 97
           + L ++    +  PL +E+DS E   L+N  R+D
Sbjct: 131 EGLRNLTNLGVLRPLHIETDSAEVESLLNRKRED 164

[Close]

BLAST of Tan0018115 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 77.0 bits (188), Expect = 1.2e-10
Identity = 38/104 (36.54%), Postives = 62/104 (59.62%), Query Frame = 0


Query: 5   WQPPSMGGWKLNTNASWDSTSNSGGMGWIMRDWTGSIVRAGHQFITHNWPITIMELFGII 64
           W+PP+   WKLNT+A+W + +N+GG+GWI+RD  G +++A  + I     IT +E+  I 
Sbjct: 79  WKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAIC 138

Query: 65  KWLDSV---------PENSIPLIVESDSWEAIQLINGNRKDHIE 100
           + L ++          E+  P+ +ESDS EAI L++   +D  E
Sbjct: 139 EGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTE 182

[Close]

BLAST of Tan0018115 vs. NCBI nr
Match: XP_022154990.1 (uncharacterized protein LOC111022134 isoform X1 [Momordica charantia])

HSP 1 Score: 76.6 bits (187), Expect = 1.5e-10
Identity = 40/106 (37.74%), Postives = 63/106 (59.43%), Query Frame = 0


Query: 5   WQPPSMGGWKLNTNASWDSTSNSGGMGWIMRDWTGSIVRAGHQFITHNWPITIMELFGII 64
           W+PP+   WKLNT+A+W + +N+ G+GWI+RD  G +++ G + I     IT +E+  I 
Sbjct: 255 WKPPTSNSWKLNTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIRAERNITYLEVMAIC 314

Query: 65  KWLDSV-PENSIPLIVESDSWEAIQLINGNRKDHIEAKDFAKIFPF 110
           + L ++  E+  P+ +ESDS EAI L+      H   K   K+F F
Sbjct: 315 EGLRAIRQEHCRPIHLESDSLEAIHLL------HRHVKIKLKLFGF 354

[Close]

BLAST of Tan0018115 vs. NCBI nr
Match: XP_022154991.1 (uncharacterized protein LOC111022134 isoform X2 [Momordica charantia])

HSP 1 Score: 76.6 bits (187), Expect = 1.5e-10
Identity = 40/106 (37.74%), Postives = 63/106 (59.43%), Query Frame = 0


Query: 5   WQPPSMGGWKLNTNASWDSTSNSGGMGWIMRDWTGSIVRAGHQFITHNWPITIMELFGII 64
           W+PP+   WKLNT+A+W + +N+ G+GWI+RD  G +++ G + I     IT +E+  I 
Sbjct: 220 WKPPTSNSWKLNTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIRAERNITYLEVMAIC 279

Query: 65  KWLDSV-PENSIPLIVESDSWEAIQLINGNRKDHIEAKDFAKIFPF 110
           + L ++  E+  P+ +ESDS EAI L+      H   K   K+F F
Sbjct: 280 EGLRAIRQEHCRPIHLESDSLEAIHLL------HRHVKIKLKLFGF 319

[Close]

BLAST of Tan0018115 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.4e-12
Identity = 39/96 (40.62%), Postives = 62/96 (64.58%), Query Frame = 0


Query: 5   WQPPSMGGWKLNTNASWDSTSNSGGMGWIMRDWTGSIVRAGHQFITHNWPITIMELFGII 64
           W+PP+   WKLNTNA+W + +N+GG+GWI+RD  G +++A  + I     IT +E+  I 
Sbjct: 79  WKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNITYLEVMAIC 138

Query: 65  KWLDSV-PENSIPLIVESDSWEAIQLINGNRKDHIE 100
           + L ++  E+  P+ +ESDS EAI L++   +D  E
Sbjct: 139 EGLRAIRQEHCRPIHLESDSLEAIHLLHRQCQDQTE 174

[Close]

BLAST of Tan0018115 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 5.7e-11
Identity = 38/104 (36.54%), Postives = 62/104 (59.62%), Query Frame = 0


Query: 5   WQPPSMGGWKLNTNASWDSTSNSGGMGWIMRDWTGSIVRAGHQFITHNWPITIMELFGII 64
           W+PP+   WKLNT+A+W + +N+GG+GWI+RD  G +++A  + I     IT +E+  I 
Sbjct: 79  WKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAIC 138

Query: 65  KWLDSV---------PENSIPLIVESDSWEAIQLINGNRKDHIE 100
           + L ++          E+  P+ +ESDS EAI L++   +D  E
Sbjct: 139 EGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTE 182

[Close]

BLAST of Tan0018115 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 5.7e-11
Identity = 36/94 (38.30%), Postives = 58/94 (61.70%), Query Frame = 0


Query: 5   WQPPSMGGWKLNTNASWDSTSNSGGMGWIMRDWTGSIVRAGHQFITHNWPITIMELFGII 64
           W+PP M  W LN +ASW  +++ GG+GWI+R W G IV AG++F+     + ++E   I+
Sbjct: 71  WEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAIL 130

Query: 65  KWLDSVPENSI--PLIVESDSWEAIQLINGNRKD 97
           + L ++    +  PL +E+DS E   L+N  R+D
Sbjct: 131 EGLRNLTNLGVLRPLHIETDSAEVESLLNRKRED 164

[Close]

BLAST of Tan0018115 vs. ExPASy TrEMBL
Match: A0A6J1DL64 (uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 7.5e-11
Identity = 40/106 (37.74%), Postives = 63/106 (59.43%), Query Frame = 0


Query: 5   WQPPSMGGWKLNTNASWDSTSNSGGMGWIMRDWTGSIVRAGHQFITHNWPITIMELFGII 64
           W+PP+   WKLNT+A+W + +N+ G+GWI+RD  G +++ G + I     IT +E+  I 
Sbjct: 255 WKPPTSNSWKLNTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIRAERNITYLEVMAIC 314

Query: 65  KWLDSV-PENSIPLIVESDSWEAIQLINGNRKDHIEAKDFAKIFPF 110
           + L ++  E+  P+ +ESDS EAI L+      H   K   K+F F
Sbjct: 315 EGLRAIRQEHCRPIHLESDSLEAIHLL------HRHVKIKLKLFGF 354

[Close]

BLAST of Tan0018115 vs. ExPASy TrEMBL
Match: A0A6J1DQC9 (uncharacterized protein LOC111022134 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 7.5e-11
Identity = 40/106 (37.74%), Postives = 63/106 (59.43%), Query Frame = 0


Query: 5   WQPPSMGGWKLNTNASWDSTSNSGGMGWIMRDWTGSIVRAGHQFITHNWPITIMELFGII 64
           W+PP+   WKLNT+A+W + +N+ G+GWI+RD  G +++ G + I     IT +E+  I 
Sbjct: 220 WKPPTSNSWKLNTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIRAERNITYLEVMAIC 279

Query: 65  KWLDSV-PENSIPLIVESDSWEAIQLINGNRKDHIEAKDFAKIFPF 110
           + L ++  E+  P+ +ESDS EAI L+      H   K   K+F F
Sbjct: 280 EGLRAIRQEHCRPIHLESDSLEAIHLL------HRHVKIKLKLFGF 319

The following BLAST results are available for this feature:

BLAST of Tan0018115 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0018115 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143535.1	2.8e-12	40.63	uncharacterized protein LOC111013412 [Momordica charantia]	[more]
XP_022155262.1	1.2e-10	38.30	uncharacterized protein LOC111022403 [Momordica charantia]	[more]
XP_022156777.1	1.2e-10	36.54	uncharacterized protein LOC111023608 [Momordica charantia]	[more]
XP_022154990.1	1.5e-10	37.74	uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]	[more]
XP_022154991.1	1.5e-10	37.74	uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]	[more]

BLAST of Tan0018115 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CP26	1.4e-12	40.63	uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1DSV1	5.7e-11	36.54	uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DNV9	5.7e-11	38.30	uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1DL64	7.5e-11	37.74	uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1DQC9	7.5e-11	37.74	uncharacterized protein LOC111022134 isoform X2 OS=Momordica charantia OX=3673 G...	[more]

BLAST of Tan0018115 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 16..97 e-value: 4.3E-10 score: 39.5
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 11..108 e-value: 3.8E-7 score: 32.2
None	No IPR available	PANTHER	PTHR33033:SF67	SUBFAMILY NOT NAMED	coord: 4..99
None	No IPR available	PANTHER	PTHR33033	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 4..99
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 10..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0018115.1	Tan0018115.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity