Tan0018041 (gene) Snake gourd v1

Overview
NameTan0018041
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRibosomal protein S21 family protein
LocationLG04: 1150261 .. 1150707 (-)
RNA-Seq ExpressionTan0018041
SyntenyTan0018041
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACTCGTTGGCGCGAAACATATCATGCTCCATTAGGTCTTCGATTCATACCACTAACTCGCTACATTGCCAGCAGCAGCAATGGAGGGGGATCCGAGCGAAGGTACTGAACGGGAATCTAGAGCGGGCACTGACATTTTTGCAAAGGAAGATGCAATCGAGCGGAATCGAGCGGCTGATTAAGCGCGAACAGACTCATCACATCAAGAATTCGGAAAAGCGAGTTTTGGCCCGAAAGAATTTGGAGCGCAAAATTCGATCGCAGGATCTTGCTCGCAAGCTTAAAGCCATTCTCGTAAAGAAAGTCAGGTATTTGTAAATCTTCGGAACTGACTTCTAGCGTAAATCTTTTCTTTGAACAATAAACTATTGAGTTATGACGCACGTATTTGAAAGGATTCTGCATAGTGGCCTGATTATACGGATCTTCTGGTTTTGTTTATAA

mRNA sequence

ATGAACTCGTTGGCGCGAAACATATCATGCTCCATTAGGTCTTCGATTCATACCACTAACTCGCTACATTGCCAGCAGCAGCAATGGAGGGGGATCCGAGCGAAGGTACTGAACGGGAATCTAGAGCGGGCACTGACATTTTTGCAAAGGAAGATGCAATCGAGCGGAATCGAGCGGCTGATTAAGCGCGAACAGACTCATCACATCAAGAATTCGGAAAAGCGAGTTTTGGCCCGAAAGAATTTGGAGCGCAAAATTCGATCGCAGGATCTTGCTCGCAAGCTTAAAGCCATTCTCGTAAAGAAAGTCAGTGGCCTGATTATACGGATCTTCTGGTTTTGTTTATAA

Coding sequence (CDS)

ATGAACTCGTTGGCGCGAAACATATCATGCTCCATTAGGTCTTCGATTCATACCACTAACTCGCTACATTGCCAGCAGCAGCAATGGAGGGGGATCCGAGCGAAGGTACTGAACGGGAATCTAGAGCGGGCACTGACATTTTTGCAAAGGAAGATGCAATCGAGCGGAATCGAGCGGCTGATTAAGCGCGAACAGACTCATCACATCAAGAATTCGGAAAAGCGAGTTTTGGCCCGAAAGAATTTGGAGCGCAAAATTCGATCGCAGGATCTTGCTCGCAAGCTTAAAGCCATTCTCGTAAAGAAAGTCAGTGGCCTGATTATACGGATCTTCTGGTTTTGTTTATAA

Protein sequence

MNSLARNISCSIRSSIHTTNSLHCQQQQWRGIRAKVLNGNLERALTFLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILVKKVSGLIIRIFWFCL
Homology
[Close]
BLAST of Tan0018041 vs. NCBI nr
Match: XP_022966846.1 (uncharacterized protein LOC111466431 [Cucurbita maxima])

HSP 1 Score: 186.8 bits (473), Expect = 1.0e-43
Identity = 99/106 (93.40%), Postives = 101/106 (95.28%), Query Frame = 0 

Query: 1   MNSLARNISCSIRSSIHTTNSLHCQQQQWRGIRAKVLNGNLERALTFLQRKMQSSGIERL 60
           MNSLARNISCSIRSSIH T SLHC QQQWRGIR KVLNGNLERA+TFLQRKMQSSGIERL
Sbjct: 1   MNSLARNISCSIRSSIHATASLHCYQQQWRGIRVKVLNGNLERAITFLQRKMQSSGIERL 60

Query: 61  IKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILVKKVSGL 107
           IKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAIL+KKV GL
Sbjct: 61  IKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 106

[Close]
BLAST of Tan0018041 vs. NCBI nr
Match: KAG6573697.1 (hypothetical protein SDJN03_27584, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 185.7 bits (470), Expect = 2.3e-43
Identity = 98/109 (89.91%), Postives = 103/109 (94.50%), Query Frame = 0 

Query: 1   MNSLARNISCSIRSSIHTTNSLHCQQQQWRGIRAKVLNGNLERALTFLQRKMQSSGIERL 60
           MNSLARNISCSIRSSIH T SLHC QQQWRGIR KVLNGNLERA+TFLQRKM+SSGIERL
Sbjct: 1   MNSLARNISCSIRSSIHATASLHCYQQQWRGIRVKVLNGNLERAITFLQRKMRSSGIERL 60

Query: 61  IKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILVKKVSGLIIR 110
           IKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAIL+KKV GL ++
Sbjct: 61  IKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGLTLQ 109

[Close]
BLAST of Tan0018041 vs. NCBI nr
Match: XP_022945130.1 (uncharacterized protein LOC111449463 [Cucurbita moschata] >XP_023541241.1 uncharacterized protein LOC111801465 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 185.3 bits (469), Expect = 3.0e-43
Identity = 98/106 (92.45%), Postives = 101/106 (95.28%), Query Frame = 0 

Query: 1   MNSLARNISCSIRSSIHTTNSLHCQQQQWRGIRAKVLNGNLERALTFLQRKMQSSGIERL 60
           MNSLARNISCSIRSSIH T SLHC QQQWRGIR KVLNGNLERA+TFLQRKM+SSGIERL
Sbjct: 1   MNSLARNISCSIRSSIHATASLHCYQQQWRGIRVKVLNGNLERAITFLQRKMRSSGIERL 60

Query: 61  IKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILVKKVSGL 107
           IKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAIL+KKV GL
Sbjct: 61  IKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 106

[Close]
BLAST of Tan0018041 vs. NCBI nr
Match: KAG7012773.1 (hypothetical protein SDJN02_25526, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 181.4 bits (459), Expect = 4.4e-42
Identity = 96/103 (93.20%), Postives = 99/103 (96.12%), Query Frame = 0 

Query: 1   MNSLARNISCSIRSSIHTTNSLHCQQQQWRGIRAKVLNGNLERALTFLQRKMQSSGIERL 60
           MNSLARNISCSIRSSIH T SLHC QQQWRGIR KVLNGNLERA+TFLQRKM+SSGIERL
Sbjct: 1   MNSLARNISCSIRSSIHATASLHCYQQQWRGIRVKVLNGNLERAITFLQRKMRSSGIERL 60

Query: 61  IKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILVKKV 104
           IKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAIL+KKV
Sbjct: 61  IKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKV 103

[Close]
BLAST of Tan0018041 vs. NCBI nr
Match: XP_022151802.1 (uncharacterized protein LOC111019699 [Momordica charantia])

HSP 1 Score: 179.5 bits (454), Expect = 1.7e-41
Identity = 98/112 (87.50%), Postives = 101/112 (90.18%), Query Frame = 0 

Query: 1   MNSLARNISCSIRSSIHTTNS------LHCQQQQWRGIRAKVLNGNLERALTFLQRKMQS 60
           MNSLARN+SC IR SIHTT+S      LHCQQQQWRGIR KVLNGNLERAL FLQRKMQS
Sbjct: 1   MNSLARNVSCFIRPSIHTTDSIHFLQNLHCQQQQWRGIRVKVLNGNLERALKFLQRKMQS 60

Query: 61  SGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILVKKVSGL 107
           SGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAIL+KKV GL
Sbjct: 61  SGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 112

[Close]
BLAST of Tan0018041 vs. ExPASy TrEMBL
Match: A0A6J1HQF3 (uncharacterized protein LOC111466431 OS=Cucurbita maxima OX=3661 GN=LOC111466431 PE=3 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 5.0e-44
Identity = 99/106 (93.40%), Postives = 101/106 (95.28%), Query Frame = 0 

Query: 1   MNSLARNISCSIRSSIHTTNSLHCQQQQWRGIRAKVLNGNLERALTFLQRKMQSSGIERL 60
           MNSLARNISCSIRSSIH T SLHC QQQWRGIR KVLNGNLERA+TFLQRKMQSSGIERL
Sbjct: 1   MNSLARNISCSIRSSIHATASLHCYQQQWRGIRVKVLNGNLERAITFLQRKMQSSGIERL 60

Query: 61  IKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILVKKVSGL 107
           IKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAIL+KKV GL
Sbjct: 61  IKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 106

[Close]
BLAST of Tan0018041 vs. ExPASy TrEMBL
Match: A0A6J1G018 (uncharacterized protein LOC111449463 OS=Cucurbita moschata OX=3662 GN=LOC111449463 PE=3 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.5e-43
Identity = 98/106 (92.45%), Postives = 101/106 (95.28%), Query Frame = 0 

Query: 1   MNSLARNISCSIRSSIHTTNSLHCQQQQWRGIRAKVLNGNLERALTFLQRKMQSSGIERL 60
           MNSLARNISCSIRSSIH T SLHC QQQWRGIR KVLNGNLERA+TFLQRKM+SSGIERL
Sbjct: 1   MNSLARNISCSIRSSIHATASLHCYQQQWRGIRVKVLNGNLERAITFLQRKMRSSGIERL 60

Query: 61  IKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILVKKVSGL 107
           IKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAIL+KKV GL
Sbjct: 61  IKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 106

[Close]
BLAST of Tan0018041 vs. ExPASy TrEMBL
Match: A0A6J1DEG8 (uncharacterized protein LOC111019699 OS=Momordica charantia OX=3673 GN=LOC111019699 PE=3 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 8.1e-42
Identity = 98/112 (87.50%), Postives = 101/112 (90.18%), Query Frame = 0 

Query: 1   MNSLARNISCSIRSSIHTTNS------LHCQQQQWRGIRAKVLNGNLERALTFLQRKMQS 60
           MNSLARN+SC IR SIHTT+S      LHCQQQQWRGIR KVLNGNLERAL FLQRKMQS
Sbjct: 1   MNSLARNVSCFIRPSIHTTDSIHFLQNLHCQQQQWRGIRVKVLNGNLERALKFLQRKMQS 60

Query: 61  SGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILVKKVSGL 107
           SGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAIL+KKV GL
Sbjct: 61  SGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 112

[Close]
BLAST of Tan0018041 vs. ExPASy TrEMBL
Match: A0A6J1J5L6 (uncharacterized protein LOC111481507 OS=Cucurbita maxima OX=3661 GN=LOC111481507 PE=3 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 6.8e-41
Identity = 96/108 (88.89%), Postives = 100/108 (92.59%), Query Frame = 0 

Query: 1   MNSLARNISCSIRSSIHTT--NSLHCQQQQWRGIRAKVLNGNLERALTFLQRKMQSSGIE 60
           MNSL+RN+SCSIRSS+HT     LH QQQQWRGIR KVLNGNLERALTFLQRKMQSSGIE
Sbjct: 1   MNSLSRNLSCSIRSSMHTNCLKHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMQSSGIE 60

Query: 61  RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILVKKVSGL 107
           RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAIL+KKV GL
Sbjct: 61  RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 108

[Close]
BLAST of Tan0018041 vs. ExPASy TrEMBL
Match: A0A6J1F3V2 (uncharacterized protein LOC111441929 OS=Cucurbita moschata OX=3662 GN=LOC111441929 PE=3 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.5e-40
Identity = 95/108 (87.96%), Postives = 100/108 (92.59%), Query Frame = 0 

Query: 1   MNSLARNISCSIRSSIHTT--NSLHCQQQQWRGIRAKVLNGNLERALTFLQRKMQSSGIE 60
           MNSL+RN+SCSIRSS+HT     LH QQQQWRGIR KVLNGNLERALTFLQRKM+SSGIE
Sbjct: 1   MNSLSRNLSCSIRSSLHTNCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIE 60

Query: 61  RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILVKKVSGL 107
           RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAIL+KKV GL
Sbjct: 61  RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 108

[Close]
BLAST of Tan0018041 vs. TAIR 10
Match: AT3G26360.1 (Ribosomal protein S21 family protein )

HSP 1 Score: 114.4 bits (285), Expect = 6.1e-26
Identity = 65/106 (61.32%), Postives = 84/106 (79.25%), Query Frame = 0 

Query: 1   MNSLARNISCSIRSSIHTTNSLHCQQQQWRGIRAKVLNGNLERALTFLQRKMQSSGIERL 60
           MN++A+ +     + + T  SL+ Q QQ RGIR KV + +L++ALT LQ+KMQSSG+ERL
Sbjct: 1   MNTIAKRV-----TGLVTRPSLNQQLQQERGIRVKVFSNDLDKALTILQKKMQSSGMERL 60

Query: 61  IKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILVKKVSGL 107
           IK  QTHHIKNSEK+VLARKNLER+I+S D ARKL++IL+KKV GL
Sbjct: 61  IKGTQTHHIKNSEKKVLARKNLERRIKSIDFARKLQSILIKKVRGL 101

The following BLAST results are available for this feature:
BLAST of Tan0018041 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0018041 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022966846.11.0e-4393.40uncharacterized protein LOC111466431 [Cucurbita maxima][more]
KAG6573697.12.3e-4389.91hypothetical protein SDJN03_27584, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022945130.13.0e-4392.45uncharacterized protein LOC111449463 [Cucurbita moschata] >XP_023541241.1 unchar... [more]
KAG7012773.14.4e-4293.20hypothetical protein SDJN02_25526, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022151802.11.7e-4187.50uncharacterized protein LOC111019699 [Momordica charantia][more]
BLAST of Tan0018041 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HQF35.0e-4493.40uncharacterized protein LOC111466431 OS=Cucurbita maxima OX=3661 GN=LOC111466431... [more]
A0A6J1G0181.5e-4392.45uncharacterized protein LOC111449463 OS=Cucurbita moschata OX=3662 GN=LOC1114494... [more]
A0A6J1DEG88.1e-4287.50uncharacterized protein LOC111019699 OS=Momordica charantia OX=3673 GN=LOC111019... [more]
A0A6J1J5L66.8e-4188.89uncharacterized protein LOC111481507 OS=Cucurbita maxima OX=3661 GN=LOC111481507... [more]
A0A6J1F3V21.5e-4087.96uncharacterized protein LOC111441929 OS=Cucurbita moschata OX=3662 GN=LOC1114419... [more]
BLAST of Tan0018041 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G26360.16.1e-2661.32Ribosomal protein S21 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001911Ribosomal protein S21PFAMPF01165Ribosomal_S21coord: 36..87
e-value: 1.1E-12
score: 47.5
NoneNo IPR availablePANTHERPTHR37228RIBOSOMAL PROTEIN S21 FAMILY PROTEINcoord: 1..105
NoneNo IPR availablePANTHERPTHR37228:SF1RIBOSOMAL PROTEIN S21 FAMILY PROTEINcoord: 1..105

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0018041.1Tan0018041.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome