Tan0017959 (gene) Snake gourd v1

Overview


Name	Tan0017959
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	DNL-type domain-containing protein
Location	LG04: 7998979 .. 8002074 (+)
RNA-Seq Expression	Tan0017959
Synteny	Tan0017959

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCGGCAAAGACTCTGTTCTTTTCCTCTCCCGCGCTTCTTCAGCAGTCCTTCAATTCTTCTCAGACTCGGCCGCATCCATCTATCACGACATTCAAATCTGTTCTCTCTTTGAAAGCAAACCCTAGCAATGGAGTCTTCATTAGGTAAACGATCGAAAACTTCCGTGTTTTTGTTATTCCTTTCTATAATTTTCTCTTTTGCACAAGAAAATTGAGCATTTCATTTCCAGGGGTAGAAACTTTCGTGTTGCACCAGTTACTCGAGAACGCAGAATTAAGGTGCTTACGGTTTCTAAATTGGTGGATGGTAATTCTGGCGATGACGAGGAATCTGCACGGAGAAATTCGGATACGGTATGAATGGCTAACAGAAATTAGTTTCCATAATGCATCTTCATGTTCCAGTATTGAGTTAAAACTTCATGTTGATTTTGAGAGAGATTCTTGAATTTATGGCTTTTGTTTATCTTTCTTCAATTTGCAGGGGGCAGCCATTGACATAAAGCTTCCAAGAAGAAGTTTGATGGTAACGTTTACCTGTAACCAATGTGGTGACAGGACGAAGAGGCTCATCAATCGATTGGCTTACGAACGGGGGCTTGTTTTTGTTCAGGTACGCTACACCATTGTATTTCAATGTTCTATTGTGTTGTAAAATGTCAATGCTACGATCAACTTTGGAATTCTATCAAAGTATTTGGTATGATGAACCATTTTGCAGTAGCAATTCGAGTAAGGGAAGCCTTCTACTGGCGCCATTGAAGCGCTGAGGCGACTGCAGTTATGTAATGTTAGGATTTTACATATCAATTCTCTTCTTCGTCTCCAAAAAAAATCAATTCTCTTCTTCTCTCTCTCTCGATAAACCTAAAAGAACTGAGAAAGGAAGCTCTGGAATCGCTCTCCTTCATCAGCGCGCCGCAGCAGGACAAGTAAGCTCTCTCTCTCTGGGTTTCTCTCTTCTCTCTCCTTCTCCATGCGCCTCTCCATCTCTCTCTCTCTCTCTTCTATCTCCATTGCGCTTTCTTTTCGACTCTTTCTCTCTGTCTGTCTCTCCATCTCACTCTCTCTTTAGGTCCCCGTCTTGCTAATCTAAACCCTTGATAACAACCGAAGTTGTGCCATTAAAGCACTTGTAAATTCTAATCTTTTGCGAAGGAAATTATTTCATGTCACAGTTCCTGAATCCTATTGACTGCTTATGGACATGGTAGTAGATAACATTATTTGGTTTCTCGTCTTTCAGGACTCTTTCCAATTCACTCACTCTCTGTCTCTCCAAGTCTCCATCTCAGCAGCTTAATTCATTTTTTCTCTCCTTCTCTATCAACTTTGAATTTGAGGTTGAGGGTGTTAGACTATATGATATAATTAAATTTACCCAAACTCAGGTTAAGTTGTTAGTTTGATTGGTGATTTAAGATGGTATCAGAGCGGGTGGTCTAGGAGATCTTGTGTTCAAGCTAATATTGATTTCACTTGTTTGGCTTAAACTCTCCGCTTAAGCTGTTAGTTTGATTGGTGATTTAAGAGAGGGTAGATAGTTTCTCCTTCTCTCTCTCCATCTTATAACAGTTAGACAATGTTGTTTTGATTGATTAGATGATGATTTGGAGGTAAATAATCCAAGGAAGAGGTTGTCATCAAGTCGAAGCCATCAAAAAGATTGTTCAGAATTAGTTAAATCTTCTAGGAAGAAGCCAAGACTAAAGAATCCAATAAATGCACAATCAACAGTGAATAATGATTCTAAAACAGAAATGAGGGAGCAAGCATGTCTAAGTATTGCAAGATGGTTTTATGATGCTGGAATACCCTTGAATGCTTGCAATTATGATAGCTTTGGTCCTATTATTGAAGCCATAGGACAGTACAGCATTGGAATGAAACCGCCAACTTATTATGAATTGAAAGTGCCATTGCTAAACAAAGAGTTAGCAGCAATCCACAAGTTGATGAAAAGTCGTAAAGAAGAGTGGGCCAAGGTTGGATGCACTATCATTGCTGATAGATGGACGGATACAAAAAATAGGACATTGATTAACTTATTAATTAATAATCCTAGAGGCACTCTGTTTATTGAGTCCATTGATGCTTCATCATGTGTGAAAAGTGGAGAGAAAATGTTTGACCTTCTTGACAAATTTGTAGAGCATATTGGAGGATAATGTTGTTCAAGTTATTACTGATAGTACTTCAGCAAATATATTAGCAGGCAAGAATATTTATGTTTAAATAGTTTACATTTAGAAGTTGGAATTAACCTTACAAAATTTTTTAGATGCTTAATATGTTCTTGTTTGACCTTGTTATTAGGGAGATTGTTAGGAGCCAAACGACCACATTTGGTTTGGTCACCATGTGTTGCTCATTGCTTAGACTTGATATTGGAGGATATATCTAAAATCCCAAATATCATGAGAACACTAAAAAGAGGCAAGCAAATCAGAGGCTATACTTATAACCGTTCCAGTGTGTTGGATAGGATGAGACGTTTTACCAATAAAAAAGAGTTAGATGGACTGACTAAGATTCAGTCTATTAATGCTTGTGTCATATTCTCAACCATGTATTGTCAAATGAACAAATTGAAACAGATGTTTACTTCAGATGAATGGAATAATAGCAAGTGGATCAAGGAGCAACGAGGTATGCGAATAGTTCAAAGTGTGTCGATGCCTACTTTTTGGACTACAACTCTATTTGTCCTTAAAATCTTGGGGCCATTGGTTCAAGTTCGTAAACTGGTGGACTGCCACAAGCCTATTATGTGATATATTCACAAGGCCATGGAAAGAGCCAAGGAAACAACAGCTAATTCCTTTAATGAAAAGGAAGAGAAGTATAAAGATGTTTTTGATATCACTGATCAAAGATGGGAACTTCAATTGCACCGCCCTTTGCATGTGTCTGGATATTACTTAAACCCAGAGTTTTCTATTCAAATCCGCATATTCAGGAGGATTGTGATGTTATTAGTGGTTTATACTCATGTCATGTATATCGAGGTTAGTTCATTCTTTTGAAATACAGGACAAGATATTGGAAGAGTTAACCTTGTATCGGAGGGAAAAAGGACCTTTTGGACAAC

mRNA sequence

ATGGCAGCGGCAAAGACTCTGTTCTTTTCCTCTCCCGCGCTTCTTCAGCAGTCCTTCAATTCTTCTCAGACTCGGCCGCATCCATCTATCACGACATTCAAATCTGTTCTCTCTTTGAAAGCAAACCCTAGCAATGGAGTCTTCATTAGGGGTAGAAACTTTCGTGTTGCACCAGTTACTCGAGAACGCAGAATTAAGGTGCTTACGGTTTCTAAATTGGTGGATGGTAATTCTGGCGATGACGAGGAATCTGCACGGAGAAATTCGGATACGGGGGCAGCCATTGACATAAAGCTTCCAAGAAGAAGTTTGATGGTAACGTTTACCTGTAACCAATGTGGTGACAGGACGAAGAGGCTCATCAATCGATTGGCTTACGAACGGGGGCTTGTTTTTGTTCAGGGAGATTGTTAGGAGCCAAACGACCACATTTGGTTTGGTCACCATGTGTTGCTCATTGCTTAGACTTGATATTGGAGGATATATCTAAAATCCCAAATATCATGAGAACACTAAAAAGAGGCAAGCAAATCAGAGGCTATACTTATAACCGTTCCAGTGTGTTGGATAGGATGAGACGTTTTACCAATAAAAAAGAGTTAGATGGACTGACTAAGATTCAGTCTATTAATGCTTGTGTCATATTCTCAACCATGTATTGTCAAATGAACAAATTGAAACAGATGTTTACTTCAGATGAATGGAATAATAGCAAGTGGATCAAGGAGCAACGAGGTATGCGAATAGTTCAAAGTGTGTCGATGCCTACTTTTTGGACTACAACTCTATTTGTCCTTAAAATCTTGGGGCCATTGGTTCAAGTTCGTAAACTGGTGGACTGCCACAAGCCTATTATGTGATATATTCACAAGGCCATGGAAAGAGCCAAGGAAACAACAGCTAATTCCTTTAATGAAAAGGAAGAGAAGTATAAAGATGTTTTTGATATCACTGATCAAAGATGGGAACTTCAATTGCACCGCCCTTTGCATGTGTCTGGATATTACTTAAACCCAGAGTTTTCTATTCAAATCCGCATATTCAGGAGGATTGTGATGTTATTAGTGGTTTATACTCATGTCATGTATATCGAGGTTAGTTCATTCTTTTGAAATACAGGACAAGATATTGGAAGAGTTAACCTTGTATCGGAGGGAAAAAGGACCTTTTGGACAAC

Coding sequence (CDS)

ATGGCAGCGGCAAAGACTCTGTTCTTTTCCTCTCCCGCGCTTCTTCAGCAGTCCTTCAATTCTTCTCAGACTCGGCCGCATCCATCTATCACGACATTCAAATCTGTTCTCTCTTTGAAAGCAAACCCTAGCAATGGAGTCTTCATTAGGGGTAGAAACTTTCGTGTTGCACCAGTTACTCGAGAACGCAGAATTAAGGTGCTTACGGTTTCTAAATTGGTGGATGGTAATTCTGGCGATGACGAGGAATCTGCACGGAGAAATTCGGATACGGGGGCAGCCATTGACATAAAGCTTCCAAGAAGAAGTTTGATGGTAACGTTTACCTGTAACCAATGTGGTGACAGGACGAAGAGGCTCATCAATCGATTGGCTTACGAACGGGGGCTTGTTTTTGTTCAGGGAGATTGTTAG

Protein sequence

MAAAKTLFFSSPALLQQSFNSSQTRPHPSITTFKSVLSLKANPSNGVFIRGRNFRVAPVTRERRIKVLTVSKLVDGNSGDDEESARRNSDTGAAIDIKLPRRSLMVTFTCNQCGDRTKRLINRLAYERGLVFVQGDC

Homology

[Close]

BLAST of Tan0017959 vs. NCBI nr
Match: KAG6601335.1 (DNL-type zinc finger protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 229.6 bits (584), Expect = 1.7e-56
Identity = 115/134 (85.82%), Postives = 124/134 (92.54%), Query Frame = 0


Query: 1   MAAAKTLFFSSPALLQQSFNSSQTRPHPSITTFKSVLSLKANPSNGVFIRGRNFRVAPVT 60
           MAAAKTL+FSSPALLQQSFNSSQTRPHPSI  F+ ++S KANPSN  FIR R+FR APVT
Sbjct: 1   MAAAKTLWFSSPALLQQSFNSSQTRPHPSIKAFRPIVSSKANPSNDFFIRSRSFRTAPVT 60

Query: 61  RERRIKVLTVSKLVDGNSGDDEESARRNSDTGAAIDIKLPRRSLMVTFTCNQCGDRTKRL 120
           RE R KVLTVS+LVDGNSGDD+ESA+RNSDTGAAIDIKLPRRSL+VTFTCNQCGDRTKRL
Sbjct: 61  RENRNKVLTVSRLVDGNSGDDDESAQRNSDTGAAIDIKLPRRSLLVTFTCNQCGDRTKRL 120

Query: 121 INRLAYERGLVFVQ 135
           INRLAYERGLVFVQ
Sbjct: 121 INRLAYERGLVFVQ 134

[Close]

BLAST of Tan0017959 vs. NCBI nr
Match: KAG7032119.1 (DNL-type zinc finger protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 228.0 bits (580), Expect = 4.9e-56
Identity = 115/134 (85.82%), Postives = 122/134 (91.04%), Query Frame = 0


Query: 1   MAAAKTLFFSSPALLQQSFNSSQTRPHPSITTFKSVLSLKANPSNGVFIRGRNFRVAPVT 60
           MAAAKTL FSSPALLQQSFN SQTRPHPSI  F+ ++S KANPSNG FIR R FR APVT
Sbjct: 1   MAAAKTLCFSSPALLQQSFNPSQTRPHPSINAFRPIVSSKANPSNGFFIRSRCFRTAPVT 60

Query: 61  RERRIKVLTVSKLVDGNSGDDEESARRNSDTGAAIDIKLPRRSLMVTFTCNQCGDRTKRL 120
           RE R KVLTVS+LVDGNSGDD+ESA+RNSDTGAAIDIKLPRRSL+VTFTCNQCGDRTKRL
Sbjct: 61  RENRNKVLTVSRLVDGNSGDDDESAQRNSDTGAAIDIKLPRRSLLVTFTCNQCGDRTKRL 120

Query: 121 INRLAYERGLVFVQ 135
           INRLAYERGLVFVQ
Sbjct: 121 INRLAYERGLVFVQ 134

[Close]

BLAST of Tan0017959 vs. NCBI nr
Match: XP_022956512.1 (uncharacterized protein LOC111458229 isoform X3 [Cucurbita moschata])

HSP 1 Score: 225.7 bits (574), Expect = 2.4e-55
Identity = 114/134 (85.07%), Postives = 121/134 (90.30%), Query Frame = 0


Query: 1   MAAAKTLFFSSPALLQQSFNSSQTRPHPSITTFKSVLSLKANPSNGVFIRGRNFRVAPVT 60
           MAAAKT  FSSPALLQQSFN SQTRPHPSI  F+ ++S KANPSNG FIR R FR APVT
Sbjct: 1   MAAAKTQCFSSPALLQQSFNPSQTRPHPSINAFRPIVSSKANPSNGFFIRSRCFRTAPVT 60

Query: 61  RERRIKVLTVSKLVDGNSGDDEESARRNSDTGAAIDIKLPRRSLMVTFTCNQCGDRTKRL 120
           RE R KVLTVS+LVDGNSGDD+ESA+RNSDTGAAIDIKLPRRSL+VTFTCNQCGDRTKRL
Sbjct: 61  RENRNKVLTVSRLVDGNSGDDDESAQRNSDTGAAIDIKLPRRSLLVTFTCNQCGDRTKRL 120

Query: 121 INRLAYERGLVFVQ 135
           INRLAYERGLVFVQ
Sbjct: 121 INRLAYERGLVFVQ 134

[Close]

BLAST of Tan0017959 vs. NCBI nr
Match: XP_022956509.1 (uncharacterized protein LOC111458229 isoform X1 [Cucurbita moschata])

HSP 1 Score: 225.7 bits (574), Expect = 2.4e-55
Identity = 114/134 (85.07%), Postives = 121/134 (90.30%), Query Frame = 0


Query: 1   MAAAKTLFFSSPALLQQSFNSSQTRPHPSITTFKSVLSLKANPSNGVFIRGRNFRVAPVT 60
           MAAAKT  FSSPALLQQSFN SQTRPHPSI  F+ ++S KANPSNG FIR R FR APVT
Sbjct: 1   MAAAKTQCFSSPALLQQSFNPSQTRPHPSINAFRPIVSSKANPSNGFFIRSRCFRTAPVT 60

Query: 61  RERRIKVLTVSKLVDGNSGDDEESARRNSDTGAAIDIKLPRRSLMVTFTCNQCGDRTKRL 120
           RE R KVLTVS+LVDGNSGDD+ESA+RNSDTGAAIDIKLPRRSL+VTFTCNQCGDRTKRL
Sbjct: 61  RENRNKVLTVSRLVDGNSGDDDESAQRNSDTGAAIDIKLPRRSLLVTFTCNQCGDRTKRL 120

Query: 121 INRLAYERGLVFVQ 135
           INRLAYERGLVFVQ
Sbjct: 121 INRLAYERGLVFVQ 134

[Close]

BLAST of Tan0017959 vs. NCBI nr
Match: XP_022987077.1 (DNL-type zinc finger protein isoform X1 [Cucurbita maxima])

HSP 1 Score: 224.9 bits (572), Expect = 4.1e-55
Identity = 113/134 (84.33%), Postives = 122/134 (91.04%), Query Frame = 0


Query: 1   MAAAKTLFFSSPALLQQSFNSSQTRPHPSITTFKSVLSLKANPSNGVFIRGRNFRVAPVT 60
           MAAAKTL FSSPALLQQSFN SQTRPHPSI  F+ ++S KANPSNG FI  R+FR APVT
Sbjct: 1   MAAAKTLCFSSPALLQQSFNPSQTRPHPSIKAFRPIVSSKANPSNGFFISSRSFRTAPVT 60

Query: 61  RERRIKVLTVSKLVDGNSGDDEESARRNSDTGAAIDIKLPRRSLMVTFTCNQCGDRTKRL 120
           RE R KVLTVS+LVDG+SGDD+ESA+RNSDTGAAIDIKLPRRSL+VTFTCNQCGDRTKRL
Sbjct: 61  RENRNKVLTVSRLVDGDSGDDDESAQRNSDTGAAIDIKLPRRSLLVTFTCNQCGDRTKRL 120

Query: 121 INRLAYERGLVFVQ 135
           INRLAYERGLVFVQ
Sbjct: 121 INRLAYERGLVFVQ 134

[Close]

BLAST of Tan0017959 vs. ExPASy TrEMBL
Match: A0A6J1GZ90 (uncharacterized protein LOC111458229 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111458229 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.2e-55
Identity = 114/134 (85.07%), Postives = 121/134 (90.30%), Query Frame = 0


Query: 1   MAAAKTLFFSSPALLQQSFNSSQTRPHPSITTFKSVLSLKANPSNGVFIRGRNFRVAPVT 60
           MAAAKT  FSSPALLQQSFN SQTRPHPSI  F+ ++S KANPSNG FIR R FR APVT
Sbjct: 1   MAAAKTQCFSSPALLQQSFNPSQTRPHPSINAFRPIVSSKANPSNGFFIRSRCFRTAPVT 60

Query: 61  RERRIKVLTVSKLVDGNSGDDEESARRNSDTGAAIDIKLPRRSLMVTFTCNQCGDRTKRL 120
           RE R KVLTVS+LVDGNSGDD+ESA+RNSDTGAAIDIKLPRRSL+VTFTCNQCGDRTKRL
Sbjct: 61  RENRNKVLTVSRLVDGNSGDDDESAQRNSDTGAAIDIKLPRRSLLVTFTCNQCGDRTKRL 120

Query: 121 INRLAYERGLVFVQ 135
           INRLAYERGLVFVQ
Sbjct: 121 INRLAYERGLVFVQ 134

[Close]

BLAST of Tan0017959 vs. ExPASy TrEMBL
Match: A0A6J1GWJ5 (uncharacterized protein LOC111458229 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111458229 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.2e-55
Identity = 114/134 (85.07%), Postives = 121/134 (90.30%), Query Frame = 0


Query: 1   MAAAKTLFFSSPALLQQSFNSSQTRPHPSITTFKSVLSLKANPSNGVFIRGRNFRVAPVT 60
           MAAAKT  FSSPALLQQSFN SQTRPHPSI  F+ ++S KANPSNG FIR R FR APVT
Sbjct: 1   MAAAKTQCFSSPALLQQSFNPSQTRPHPSINAFRPIVSSKANPSNGFFIRSRCFRTAPVT 60

Query: 61  RERRIKVLTVSKLVDGNSGDDEESARRNSDTGAAIDIKLPRRSLMVTFTCNQCGDRTKRL 120
           RE R KVLTVS+LVDGNSGDD+ESA+RNSDTGAAIDIKLPRRSL+VTFTCNQCGDRTKRL
Sbjct: 61  RENRNKVLTVSRLVDGNSGDDDESAQRNSDTGAAIDIKLPRRSLLVTFTCNQCGDRTKRL 120

Query: 121 INRLAYERGLVFVQ 135
           INRLAYERGLVFVQ
Sbjct: 121 INRLAYERGLVFVQ 134

[Close]

BLAST of Tan0017959 vs. ExPASy TrEMBL
Match: A0A6J1J9C7 (DNL-type zinc finger protein isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111484608 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 2.0e-55
Identity = 113/134 (84.33%), Postives = 122/134 (91.04%), Query Frame = 0


Query: 1   MAAAKTLFFSSPALLQQSFNSSQTRPHPSITTFKSVLSLKANPSNGVFIRGRNFRVAPVT 60
           MAAAKTL FSSPALLQQSFN SQTRPHPSI  F+ ++S KANPSNG FI  R+FR APVT
Sbjct: 1   MAAAKTLCFSSPALLQQSFNPSQTRPHPSIKAFRPIVSSKANPSNGFFISSRSFRTAPVT 60

Query: 61  RERRIKVLTVSKLVDGNSGDDEESARRNSDTGAAIDIKLPRRSLMVTFTCNQCGDRTKRL 120
           RE R KVLTVS+LVDG+SGDD+ESA+RNSDTGAAIDIKLPRRSL+VTFTCNQCGDRTKRL
Sbjct: 61  RENRNKVLTVSRLVDGDSGDDDESAQRNSDTGAAIDIKLPRRSLLVTFTCNQCGDRTKRL 120

Query: 121 INRLAYERGLVFVQ 135
           INRLAYERGLVFVQ
Sbjct: 121 INRLAYERGLVFVQ 134

[Close]

BLAST of Tan0017959 vs. ExPASy TrEMBL
Match: A0A6J1JD66 (DNL-type zinc finger protein isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111484608 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 4.9e-54
Identity = 113/134 (84.33%), Postives = 122/134 (91.04%), Query Frame = 0


Query: 1   MAAAKTLFFSSPALLQQSFNSSQTRPHPSITTFKSVLSLKANPSNGVFIRGRNFRVAPVT 60
           MAAAKTL FSSPALLQQSFN SQTRPHPSI  F+ ++S KANPSNG FI  R+FR APVT
Sbjct: 1   MAAAKTLCFSSPALLQQSFNPSQTRPHPSIKAFRPIVSSKANPSNGFFI--RSFRTAPVT 60

Query: 61  RERRIKVLTVSKLVDGNSGDDEESARRNSDTGAAIDIKLPRRSLMVTFTCNQCGDRTKRL 120
           RE R KVLTVS+LVDG+SGDD+ESA+RNSDTGAAIDIKLPRRSL+VTFTCNQCGDRTKRL
Sbjct: 61  RENRNKVLTVSRLVDGDSGDDDESAQRNSDTGAAIDIKLPRRSLLVTFTCNQCGDRTKRL 120

Query: 121 INRLAYERGLVFVQ 135
           INRLAYERGLVFVQ
Sbjct: 121 INRLAYERGLVFVQ 132

[Close]

BLAST of Tan0017959 vs. ExPASy TrEMBL
Match: A0A6J1GXZ4 (mitochondrial protein import protein ZIM17 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111458229 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.4e-53
Identity = 113/134 (84.33%), Postives = 120/134 (89.55%), Query Frame = 0


Query: 1   MAAAKTLFFSSPALLQQSFNSSQTRPHPSITTFKSVLSLKANPSNGVFIRGRNFRVAPVT 60
           MAAAKT  FSSPALLQQSFN SQTRPHPSI  F+ ++S KANPSNG FI  R FR APVT
Sbjct: 1   MAAAKTQCFSSPALLQQSFNPSQTRPHPSINAFRPIVSSKANPSNGFFI--RCFRTAPVT 60

Query: 61  RERRIKVLTVSKLVDGNSGDDEESARRNSDTGAAIDIKLPRRSLMVTFTCNQCGDRTKRL 120
           RE R KVLTVS+LVDGNSGDD+ESA+RNSDTGAAIDIKLPRRSL+VTFTCNQCGDRTKRL
Sbjct: 61  RENRNKVLTVSRLVDGNSGDDDESAQRNSDTGAAIDIKLPRRSLLVTFTCNQCGDRTKRL 120

Query: 121 INRLAYERGLVFVQ 135
           INRLAYERGLVFVQ
Sbjct: 121 INRLAYERGLVFVQ 132

[Close]

BLAST of Tan0017959 vs. TAIR 10
Match: AT1G68730.1 (Zim17-type zinc finger protein )

HSP 1 Score: 80.9 bits (198), Expect = 8.9e-16
Identity = 47/79 (59.49%), Postives = 51/79 (64.56%), Query Frame = 0


Query: 56  VAPVTRERRIKVLTVSKLVDGNSGDDEESARRNSDTGAAIDIKLPRRSLMVTFTCNQCGD 115
           V P  R R   V   S   D     DEES   +S   A+IDIKLPRRSL V FTCN CG+
Sbjct: 61  VTPKQRNRSFSVFG-SLADDSKLNPDEES--NDSAEVASIDIKLPRRSLQVEFTCNSCGE 120

Query: 116 RTKRLINRLAYERGLVFVQ 135
           RTKRLINR AYE+GLVFVQ
Sbjct: 121 RTKRLINRHAYEKGLVFVQ 136

[Close]

BLAST of Tan0017959 vs. TAIR 10
Match: AT5G27280.1 (Zim17-type zinc finger protein )

HSP 1 Score: 48.5 bits (114), Expect = 4.9e-06
Identity = 40/135 (29.63%), Postives = 58/135 (42.96%), Query Frame = 0


Query: 10  SSPALLQQSFNSSQTRPHPSITTFKSVLSLK-ANPSNGVFIRGRNFRVAPVTRERRIKVL 69
           SSP  +      + + P P I    +    K  +P +        FR   ++ +  + ++
Sbjct: 17  SSPLSIFSPKKRTDSSPPPRIVRLSNKKEDKDYDPQHSESNSSSLFRNRTLSNDEAMGLV 76

Query: 70  TVSKLVDG---NSGDDEESARRNSDTGA------AIDIKLPRRSLMVTFTCNQCGDRTKR 129
             +  V G    SG +  S    +DT        ++  K PRR + V FTCN CG RT R
Sbjct: 77  LSAASVKGWTTGSGMEGPSLPAKTDTDTVSTFPWSLFTKSPRRRMRVAFTCNVCGQRTTR 136

Query: 130 LINRLAYERGLVFVQ 135
            IN  AY  G VFVQ
Sbjct: 137 AINPHAYTDGTVFVQ 151

The following BLAST results are available for this feature:

BLAST of Tan0017959 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0017959 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6601335.1	1.7e-56	85.82	DNL-type zinc finger protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7032119.1	4.9e-56	85.82	DNL-type zinc finger protein [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022956512.1	2.4e-55	85.07	uncharacterized protein LOC111458229 isoform X3 [Cucurbita moschata]	[more]
XP_022956509.1	2.4e-55	85.07	uncharacterized protein LOC111458229 isoform X1 [Cucurbita moschata]	[more]
XP_022987077.1	4.1e-55	84.33	DNL-type zinc finger protein isoform X1 [Cucurbita maxima]	[more]

BLAST of Tan0017959 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GZ90	1.2e-55	85.07	uncharacterized protein LOC111458229 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1GWJ5	1.2e-55	85.07	uncharacterized protein LOC111458229 isoform X3 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1J9C7	2.0e-55	84.33	DNL-type zinc finger protein isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111484...	[more]
A0A6J1JD66	4.9e-54	84.33	DNL-type zinc finger protein isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111484...	[more]
A0A6J1GXZ4	1.4e-53	84.33	mitochondrial protein import protein ZIM17 isoform X2 OS=Cucurbita moschata OX=3...	[more]

BLAST of Tan0017959 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68730.1	8.9e-16	59.49	Zim17-type zinc finger protein	[more]
AT5G27280.1	4.9e-06	29.63	Zim17-type zinc finger protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007853	Zinc finger, DNL-type	PFAM	PF05180	zf-DNL	coord: 106..134 e-value: 9.2E-7 score: 28.7
IPR007853	Zinc finger, DNL-type	PROSITE	PS51501	ZF_DNL	coord: 99..134 score: 9.787852
IPR024158	Mitochondrial import protein TIM15	PANTHER	PTHR20922	UNCHARACTERIZED	coord: 30..134
None	No IPR available	PANTHER	PTHR20922:SF19	F24J5.3	coord: 30..134

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0017959.1	Tan0017959.1	mRNA
Tan0017959.2	Tan0017959.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
biological_process	GO:0030150	protein import into mitochondrial matrix
biological_process	GO:0050821	protein stabilization
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0051087	chaperone binding
molecular_function	GO:0008270	zinc ion binding