Tan0017765 (gene) Snake gourd v1

Overview
NameTan0017765
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG04: 83126965 .. 83127168 (+)
RNA-Seq ExpressionTan0017765
SyntenyTan0017765
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCTTCCATGAGACTCCCTCATTTTGCTTTTGCTGCTGCTTTGGTCCTTGCAATGGTGTGCTTAGAGATGAAGGTCAATGCCATTGAGGATGAGATAGCTCCAATGCCTGCCATGGCTGCTGGCTCTGCATTTCCTTCTACTGTTGCCTTTGCTTTCAATTCTGTAATCCCTCTTTTGCTCTGTATTTTAGGTGTCTAA

mRNA sequence

ATGGCTTCTTCCATGAGACTCCCTCATTTTGCTTTTGCTGCTGCTTTGGTCCTTGCAATGGTGTGCTTAGAGATGAAGGTCAATGCCATTGAGGATGAGATAGCTCCAATGCCTGCCATGGCTGCTGGCTCTGCATTTCCTTCTACTGTTGCCTTTGCTTTCAATTCTGTAATCCCTCTTTTGCTCTGTATTTTAGGTGTCTAA

Coding sequence (CDS)

ATGGCTTCTTCCATGAGACTCCCTCATTTTGCTTTTGCTGCTGCTTTGGTCCTTGCAATGGTGTGCTTAGAGATGAAGGTCAATGCCATTGAGGATGAGATAGCTCCAATGCCTGCCATGGCTGCTGGCTCTGCATTTCCTTCTACTGTTGCCTTTGCTTTCAATTCTGTAATCCCTCTTTTGCTCTGTATTTTAGGTGTCTAA

Protein sequence

MASSMRLPHFAFAAALVLAMVCLEMKVNAIEDEIAPMPAMAAGSAFPSTVAFAFNSVIPLLLCILGV
Homology
[Close]
BLAST of Tan0017765 vs. NCBI nr
Match: KGN58599.1 (hypothetical protein Csa_001638 [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 1.9e-13
Identity = 49/69 (71.01%), Postives = 56/69 (81.16%), Query Frame = 0 

Query: 1  MASSMRLPHF-AFAAALVLAMVCLEM-KVNAIEDEIAPMPAMAAGSAFPSTVAFAFNSVI 60
          MASSMR PHF   A  LVLAMV +EM KV++IEDE+APMPAMAAG AFPS+VA  FN V+
Sbjct: 1  MASSMRFPHFVVVAVVLVLAMVSIEMKKVDSIEDELAPMPAMAAGFAFPSSVALGFNFVV 60

Query: 61 PLLLCILGV 68
          PLLLC+ GV
Sbjct: 61 PLLLCVFGV 69

[Close]
BLAST of Tan0017765 vs. NCBI nr
Match: KAG6581583.1 (hypothetical protein SDJN03_21585, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 79.3 bits (194), Expect = 1.4e-11
Identity = 49/68 (72.06%), Postives = 54/68 (79.41%), Query Frame = 0 

Query: 1  MASSMRLPH-FAFAAALVLAMVCLEM-KVNAIEDEIAPMPAMAAGSAFPSTVAFAFNSVI 60
          MA SMRLPH +A AA L LAMVC EM KV+ IE EI+PMPAMAAGSA PSTVA+AFN+V 
Sbjct: 1  MAPSMRLPHYYATAAVLALAMVCFEMKKVHGIEAEISPMPAMAAGSASPSTVAYAFNAVF 60

Query: 61 PLLLCILG 67
          P LLC  G
Sbjct: 61 P-LLCTFG 67

[Close]
BLAST of Tan0017765 vs. ExPASy TrEMBL
Match: A0A0A0LCE5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G697920 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 9.2e-14
Identity = 49/69 (71.01%), Postives = 56/69 (81.16%), Query Frame = 0 

Query: 1  MASSMRLPHF-AFAAALVLAMVCLEM-KVNAIEDEIAPMPAMAAGSAFPSTVAFAFNSVI 60
          MASSMR PHF   A  LVLAMV +EM KV++IEDE+APMPAMAAG AFPS+VA  FN V+
Sbjct: 1  MASSMRFPHFVVVAVVLVLAMVSIEMKKVDSIEDELAPMPAMAAGFAFPSSVALGFNFVV 60

Query: 61 PLLLCILGV 68
          PLLLC+ GV
Sbjct: 61 PLLLCVFGV 69

The following BLAST results are available for this feature:
BLAST of Tan0017765 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0017765 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN58599.11.9e-1371.01hypothetical protein Csa_001638 [Cucumis sativus][more]
KAG6581583.11.4e-1172.06hypothetical protein SDJN03_21585, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Tan0017765 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCE59.2e-1471.01Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G697920 PE=4 SV=1[more]
BLAST of Tan0017765 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0017765.1Tan0017765.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane