Tan0017680 (gene) Snake gourd v1

Overview


Name	Tan0017680
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Reverse transcriptase
Location	LG08: 72837537 .. 72839575 (+)
RNA-Seq Expression	Tan0017680
Synteny	Tan0017680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGTGAGCAAAAACATCTCGGAGGCCCATGCCTCGGATTTCGGTGCCATCTTGGCGGTGAACCAATCTTCCTCCCTTGGAGAGTACCTTGGTATGTCGTCTCATTCGGGCAAAAACAGGAGCAAGCTCTTTTGGAAGGTCAAAAACAAAGTTTGGAAAGCCCTCCAACTTTGGAAGGAGAAACTCTTTTCTTTGGGAGGCAAAGAAACTCTCATTAAAACGATTGCTCAGGCGATCCCTACCTACACTATGAGTTGTTTCAAGCTCCCTAAGAAAATTTGTGATGATATTAACGGGATGTGCGCCCGCTTTTGGTGGGGTTCTTGCCCCTCTAGGAAGAGAATGCATTGGATGAGTTGGGATAAGCTTTGCAAGAGTAAAAGGGATGTGGGGCTTGGCTTTAGAGAACTCTCTAGTTTTAACCAGCCCTGCTTGCGAAAATTAGCTGGCGCATCATCAGAAATCCTAATAGCCTCCTTGCCCAACACCTCAAAGGGCGTTACTTTAAGGATGGTGATTTCCTAAAAGCCCCCTTCGGTAATAACCCCTCTTTGAACTGGAGGAGCATCCTTTGGGGCAGAGAGCTCTTTGAGAAAGGCTATCGTTGGAAGGTCGGTAATGGGAATCACATTAGAATCTTTGAAGATCCTTGGTTGGATAGGAAAGGCAGTAGTGTCCCTTTGGGGGTCAATGATCTGTTTAAACATGAACGTGTTAAAGTGTTGATTGATGATCATGGTACCTGGAAAGAGCAAGTCGTTAAGGGCATTTTCTCTCCTATGGACATTGAAGATATCCTCAAAATCCCCATTGGGAACCACCTGTCTAAAGACGAAATAATTTGGAACCATGACTCCAAGGGCTTATTCTCTGTTAAAAGTGCCTTTCGGTTGGCTTCTAGCTTAAAGCAAAGAGTTGTTGGCTCCTCTTCCAACAAATAGGACTGCCAAGCAAAGTGGAAGGCTTTCTGGAAGATCGATATGATGCCTAAAGCTAAGATATGTGTTTGGAAAATCATCCAGGACATTCTTCCTACTTGGATAAACCTTATCAAAAGAGGCATTGACACCAACCCTTCCTGCCTATTCTGTAGAAAGAAGGTTGAATCCACCGCCCACGTTATGTGGAGTTGTAAGTTCTCTCGAGCCATTTGGCTAAATTATTTACCATGCTTATCCGCTCTCTTCTCTCTTTGCAGGGAAGACTGGAAGCCTAACGTCTACTGGGATTGGCTAGAAGATAACCTTTCAGAGGCAAACCTGAAGCTTGCCTTAATTATTCTCTGGAGTCTTTGGTTTTTCAGAAATCAAGTCTTACACAATGAAATTACTGTTGACTTTCAACTAATCTACAGGCAAATTGACACTTATAAGCTGAAATTTCAGTCTCGTGAAAATGCCATAAATGTTACCTCCTGGTCTGAGAACCTCTCGAGTCACGCCGCATGGGAGCCCCCCCAACCCAATCACTGGAAATTGAACTGCGACGCTTCCTGGTTTGAGAAGAAGAATAGAGGCGGTTGTGGTTGGATTGCCCGTGACTCTGAAGGTTCTTTGATCTGCTAAGGCTCTACTCAAATCAGCAGGAACTGGAACATCAAGGCATTGGAAATCACTGCAATCTTGGAAGGGCTGAAAAACCTGCGCTCAAACATATGTGGCCCTCTCCCCATTATTATCGTGGAATCTGAGATCTTCTGAACAATTTTTCGACTGATTTAACGGAAATTTCTAACCTGGTGGCTGAGGTTGAGCTCGTGGCGCGCTCGTTGGGTTTGGTCTTGTTCTCCAATTGCCCTCGCGCTTGCAATTCTGCTGCTCACAACCTTGCTCGGAGAGCTTCTGTGGAGGTCTCCTCTCCCCCGCGACCTGGAGATTTCTTCCCTTCTCCCTCTTGCATGTTTGCTTCGTCCTCTTCCCCTGTGTTCTTCTCTCCCCTCCTGTTAGACTCTTACGAGGATATTATTGCTTGGTAGTTGGGTTTTTACTTGTATTTATTTCCTTCTCAAAAAAAAAAAGTTGCATTTTTAGTTTGGC

mRNA sequence

ATGGTAGTGAGCAAAAACATCTCGGAGGCCCATGCCTCGGATTTCGGTGCCATCTTGGCGGTGAACCAATCTTCCTCCCTTGGAGAGTACCTTGGGCGTTACTTTAAGGATGGTGATTTCCTAAAAGCCCCCTTCGGTAATAACCCCTCTTTGAACTGGAGGAGCATCCTTTGGGGCAGAGAGCTCTTTGAGAAAGGCTATCGTTGGAAGGTCGGTAATGGGAATCACATTAGAATCTTTGAAGATCCTTGGTTGGATAGGAAAGGCAGTAGTGTCCCTTTGGGGGTCAATGATCTGTTTAAACATGAACGTGTTAAAGTGTTGATTGATGATCATGGTACCTGGAAAGAGCAAGTCGTTAAGGGCATTTTCTCTCCTATGGACATTGAAGATATCCTCAAAATCCCCATTGGGAACCACCTGTCTAAAGACGAAATAATTTGGAACCATGACTCCAAGGGCTTATTCTCTGTTAAAAGTGCCTTTCGGGAAGACTGGAAGCCTAACGTCTACTGGGATTGGCTAGAAGATAACCTTTCAGAGGCAAACCTGAAGCTTGCCTTAATTATTCTCTGGAGTCTTTGGTTTTTCAGAAATCAAGTCTTACACAATGAAATTACTGTTGACTTTCAACTAATCTACAGGCAAATTGACACTTATAAGCTGAAATTTCAGTCTCGTGAAAATGCCATAAATGTTACCTCCTGGTCTGAGAACCTCTCGAGTCACGCCGCATGGGAGCCCCCCCAACCCAATCACTGGAAATTGAACTGCGACGCTTCCTGGTTTGAGAAGAAGAATAGAGGCGGTTGTGGTTGGATTGCCCGTGACTCTGAAGATCTTCTGAACAATTTTTCGACTGATTTAACGGAAATTTCTAACCTGGTGGCTGAGGTTGAGCTCGTGGCGCGCTCGTTGGGTTTGGTCTTGTTCTCCAATTGCCCTCGCGCTTGCAATTCTGCTGCTCACAACCTTGCTCGGAGAGCTTCTGTGGAGGTCTCCTCTCCCCCGCGACCTGGAGATTTCTTCCCTTCTCCCTCTTGCATGTTTGCTTCGTCCTCTTCCCCTGTGTTCTTCTCTCCCCTCCTGTTAGACTCTTACGAGGATATTATTGCTTGGTAGTTGGGTTTTTACTTGTATTTATTTCCTTCTCAAAAAAAAAAAGTTGCATTTTTAGTTTGGC

Coding sequence (CDS)

ATGGTAGTGAGCAAAAACATCTCGGAGGCCCATGCCTCGGATTTCGGTGCCATCTTGGCGGTGAACCAATCTTCCTCCCTTGGAGAGTACCTTGGGCGTTACTTTAAGGATGGTGATTTCCTAAAAGCCCCCTTCGGTAATAACCCCTCTTTGAACTGGAGGAGCATCCTTTGGGGCAGAGAGCTCTTTGAGAAAGGCTATCGTTGGAAGGTCGGTAATGGGAATCACATTAGAATCTTTGAAGATCCTTGGTTGGATAGGAAAGGCAGTAGTGTCCCTTTGGGGGTCAATGATCTGTTTAAACATGAACGTGTTAAAGTGTTGATTGATGATCATGGTACCTGGAAAGAGCAAGTCGTTAAGGGCATTTTCTCTCCTATGGACATTGAAGATATCCTCAAAATCCCCATTGGGAACCACCTGTCTAAAGACGAAATAATTTGGAACCATGACTCCAAGGGCTTATTCTCTGTTAAAAGTGCCTTTCGGGAAGACTGGAAGCCTAACGTCTACTGGGATTGGCTAGAAGATAACCTTTCAGAGGCAAACCTGAAGCTTGCCTTAATTATTCTCTGGAGTCTTTGGTTTTTCAGAAATCAAGTCTTACACAATGAAATTACTGTTGACTTTCAACTAATCTACAGGCAAATTGACACTTATAAGCTGAAATTTCAGTCTCGTGAAAATGCCATAAATGTTACCTCCTGGTCTGAGAACCTCTCGAGTCACGCCGCATGGGAGCCCCCCCAACCCAATCACTGGAAATTGAACTGCGACGCTTCCTGGTTTGAGAAGAAGAATAGAGGCGGTTGTGGTTGGATTGCCCGTGACTCTGAAGATCTTCTGAACAATTTTTCGACTGATTTAACGGAAATTTCTAACCTGGTGGCTGAGGTTGAGCTCGTGGCGCGCTCGTTGGGTTTGGTCTTGTTCTCCAATTGCCCTCGCGCTTGCAATTCTGCTGCTCACAACCTTGCTCGGAGAGCTTCTGTGGAGGTCTCCTCTCCCCCGCGACCTGGAGATTTCTTCCCTTCTCCCTCTTGCATGTTTGCTTCGTCCTCTTCCCCTGTGTTCTTCTCTCCCCTCCTGTTAGACTCTTACGAGGATATTATTGCTTGGTAG

Protein sequence

MVVSKNISEAHASDFGAILAVNQSSSLGEYLGRYFKDGDFLKAPFGNNPSLNWRSILWGRELFEKGYRWKVGNGNHIRIFEDPWLDRKGSSVPLGVNDLFKHERVKVLIDDHGTWKEQVVKGIFSPMDIEDILKIPIGNHLSKDEIIWNHDSKGLFSVKSAFREDWKPNVYWDWLEDNLSEANLKLALIILWSLWFFRNQVLHNEITVDFQLIYRQIDTYKLKFQSRENAINVTSWSENLSSHAAWEPPQPNHWKLNCDASWFEKKNRGGCGWIARDSEDLLNNFSTDLTEISNLVAEVELVARSLGLVLFSNCPRACNSAAHNLARRASVEVSSPPRPGDFFPSPSCMFASSSSPVFFSPLLLDSYEDIIAW

Homology

[Close]

BLAST of Tan0017680 vs. ExPASy Swiss-Prot
Match: P93295 (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 GN=AtMg00310 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 1.3e-05
Identity = 20/53 (37.74%), Postives = 30/53 (56.60%), Query Frame = 0


Query: 33  RYFKDGDFLKAPFGNNPSLNWRSILWGRELFEKGYRWKVGNGNHIRIFEDPWL 86
           RYF     ++   G  PS  WRSI+ GREL  +G    +G+G H +++ D W+
Sbjct: 92  RYFPHSSMMECSVGTRPSYAWRSIIHGRELLSRGLLRTIGDGIHTKVWLDRWI 144

[Close]

BLAST of Tan0017680 vs. NCBI nr
Match: XP_023897447.1 (uncharacterized protein LOC112009345 [Quercus suber])

HSP 1 Score: 151.8 bits (382), Expect = 1.2e-32
Identity = 85/271 (31.37%), Postives = 133/271 (49.08%), Query Frame = 0


Query: 33   RYFKDGDFLKAPFGNNPSLNWRSILWGRELFEKGYRWKVGNGNHIRIFEDPWLDRKGSSV 92
            +YF   DFL A  GNNPS  WRSIL  + + EKG RW+VG+G++I+++ D WL R  S  
Sbjct: 748  KYFPSRDFLHATAGNNPSYTWRSILVAKSIIEKGCRWRVGSGSNIKVWGDKWLPRAASYE 807

Query: 93   PLGVNDLFKHERVKV---LIDDHGTWKEQVVKGIFSPMDIEDILKIPIGNHLSKDEIIWN 152
             +    LF H   KV   +  +   WKE++++ IF P+D+E IL IP+     +D +IW 
Sbjct: 808  VISPR-LFLHPETKVSEFICQERCCWKEEIIRQIFFPVDMEVILGIPLSTRFPEDRVIWA 867

Query: 153  HDSKGLFSVKSAFR---------------------EDWKPNVYWDWLEDNLSEANLKLAL 212
              S G FSV+SA+R                       WK   +      +  E  + L +
Sbjct: 868  ETSNGGFSVRSAYRVAMGLYQAENAVSASSNSQLQSFWKKLWHLPVPHKSFDEEKIILVV 927

Query: 213  IILWSLWFFRNQVLHNEITVDFQLIYRQIDTYKLKFQSRENAINVTSWSENLSSHAAWEP 272
             + W+ W  RN++ H       + I + ++ Y L++ +     +V +  E +S    W P
Sbjct: 928  TVAWAFWCNRNEIRHGAEKKSPEAIVQWVNRYLLEYSAATE--SVPAVREEVS--VTWNP 987

Query: 273  PQPNHWKLNCDASWFEKKNRGGCGWIARDSE 280
            P P+  K+N D +  +  N  G G + RD +
Sbjct: 988  PPPSILKVNVDGATTKNLNFVGVGAVVRDEQ 1013

[Close]

BLAST of Tan0017680 vs. NCBI nr
Match: KAA3479362.1 (reverse transcriptase [Gossypium australe])

HSP 1 Score: 140.6 bits (353), Expect = 2.8e-29
Identity = 86/282 (30.50%), Postives = 139/282 (49.29%), Query Frame = 0


Query: 33   RYFKDGDFLKAPFGNNPSLNWRSILWGRELFEKGYRWKVGNGNHIRIFEDPWLDRKGSSV 92
            RY+   +FL A  G+ PS  WRSI   REL   G  W++GNG  + I+ DPW+   G S 
Sbjct: 747  RYYPKTNFLSAKVGSYPSFTWRSICVARELIADGLFWRIGNGRSVNIWNDPWVPGPGRSC 806

Query: 93   PLGVNDLFKH-ERVKVLIDDHG-TWKEQVVKGIFSPMDIEDILKIPIGNHLSKDEIIWNH 152
             L V ++  H   V  LID+H  TWK+ ++  +      + IL IP+ +   +D ++W+H
Sbjct: 807  -LSVQNINTHWSTVNQLIDEHSFTWKKDIIYKLVDCDQAKRILNIPLAHSDEEDVLVWSH 866

Query: 153  DSKGLFSVKSAFREDWKPNVYW--------------------DWLEDN--------LSEA 212
            D+ G+++VKS    +   ++ W                    D  EDN        +++ 
Sbjct: 867  DNTGVYTVKSGSAPEDSEHLLWSCDVLRSIWNLLDLYVDLNGDSSEDNKLVRMFLTVTDE 926

Query: 213  NLKLALIILWSLWFFRNQVLHN--EITVDFQLIYRQIDTYKLKFQSRENAINVTSWSENL 272
              KL  I  W+LWF RN+++H   + ++D  L + +   Y+LK        + +S+S+N 
Sbjct: 927  KRKLLTISFWALWFMRNKMVHEGCKFSLDELLCFIRRYVYELKMSCTS---DFSSFSKNT 986

Query: 273  SSHAAWEPPQPNHWKLNCDASWFEKKNRGGCGWIARDSEDLL 283
               A W+PP P   KLN DAS+ +  N    G +  + + L+
Sbjct: 987  ---AFWKPPLPGIIKLNFDASFVKASNSAIVGVVRHNDKGLV 1021

[Close]

BLAST of Tan0017680 vs. NCBI nr
Match: XP_023870384.1 (uncharacterized protein LOC111982984, partial [Quercus suber])

HSP 1 Score: 140.2 bits (352), Expect = 3.6e-29
Identity = 83/251 (33.07%), Postives = 127/251 (50.60%), Query Frame = 0


Query: 33  RYFKDGDFLKAPFGNNPSLNWRSILWGRELFEKGYRWKVGNGNHIRIFEDPWLDRKGSSV 92
           +YF +GDFL A  G+NPS  WR I   + + ++G RW+VGNG  IRI+ D WL  +GSS 
Sbjct: 296 KYFPNGDFLNATLGSNPSYTWRGIFSAQYIVKQGVRWRVGNGKDIRIWGDKWLP-QGSSY 355

Query: 93  PLGVNDLFKHE--RVKVLIDD-HGTWKEQVVKGIFSPMDIEDILKIPIGNHLSKDEIIWN 152
            +    +F H+  RV  LI     TW E+V++ IF P+D + IL IP+   L  D IIW 
Sbjct: 356 EVISPRIFLHQDTRVSELIHSVRKTWNEEVIRQIFLPVDADTILGIPLSIRLPGDRIIWV 415

Query: 153 HDSKGLFSVKSAF---REDWKPNVYWDWLEDNLSEANLKLALIILWSLWFFRNQVLHNEI 212
             + G F+V+SA+    +  +         D   E  + L + I WSLW   N V H  +
Sbjct: 416 ETNNGCFTVRSAYWVAMKSHRSAQNATVSSDTFEEEKVALVVTIAWSLWSNHNLVRHRGL 475

Query: 213 TVDFQLIYRQIDTYKLKFQSRENAINVTSWSENLSSHAAWEPPQPNHWKLNCDASWFEKK 272
               + I +    Y   + +  +++ V   S +++    W PP P+  K+N D +  + +
Sbjct: 476 RKTPEAIVQWASHYLQDYAAATDSLPVILESVSVT----WSPPPPSVVKINVDGALAKSR 535

Query: 273 NRGGCGWIARD 278
                G + RD
Sbjct: 536 CSARIGVVIRD 541

[Close]

BLAST of Tan0017680 vs. NCBI nr
Match: KAA3472112.1 (reverse transcriptase [Gossypium australe])

HSP 1 Score: 136.7 bits (343), Expect = 4.0e-28
Identity = 82/282 (29.08%), Postives = 134/282 (47.52%), Query Frame = 0


Query: 33  RYFKDGDFLKAPFGNNPSLNWRSILWGRELFEKGYRWKVGNGNHIRIFEDPWLDRKGSSV 92
           RY+   +FL A  G+ PS  WRSI   REL   G  W++GNG  I I+ DPW+   G S 
Sbjct: 687 RYYPKTNFLSAKVGSYPSFTWRSICGARELIAAGLCWRIGNGKSINIWNDPWVPGTGQSC 746

Query: 93  PLGVNDLFKH-ERVKVLIDDHG-TWKEQVVKGIFSPMDIEDILKIPIGNHLSKDEIIWNH 152
            L V ++  H + V  LID+   TWK+ ++  +      + IL IP+     +D ++W H
Sbjct: 747 -LSVQNMNIHWQTVNQLIDEQSFTWKKDIIHKLVDCDKAKRILNIPLARSDEEDLLVWRH 806

Query: 153 DSKGLFSVKSAFREDWKPNVYW--------------------DWLEDN--------LSEA 212
           D+ G++SVKS    +   ++ W                    D  EDN        +++ 
Sbjct: 807 DNTGVYSVKSGSAPEDSEHLLWYCEVLRTIWNLLDLYVDLDGDPSEDNKLVRMFIIVTDE 866

Query: 213 NLKLALIILWSLWFFRNQVLHN--EITVDFQLIYRQIDTYKLKFQSRENAINVTSWSENL 272
             KL  I  W++W+ RN+++H   + ++D  + + +   Y+L      N ++++      
Sbjct: 867 KRKLLTISFWAIWYMRNKMVHEGCKFSLDEIVCFIRRYVYELNLSCTSNLLSIS------ 926

Query: 273 SSHAAWEPPQPNHWKLNCDASWFEKKNRGGCGWIARDSEDLL 283
            + A W+PP P   KLN DAS+    N    G + R+   L+
Sbjct: 927 KNTAFWKPPLPGIIKLNFDASFVNATNSAIVGVVGRNDRGLI 961

[Close]

BLAST of Tan0017680 vs. NCBI nr
Match: XP_030487365.1 (uncharacterized protein LOC115704292 [Cannabis sativa])

HSP 1 Score: 136.0 bits (341), Expect = 6.8e-28
Identity = 94/318 (29.56%), Postives = 143/318 (44.97%), Query Frame = 0


Query: 33  RYFKDGDFLKAPFGNNPSLNWRSILWGRELFEKGYRWKVGNGNHIRIFEDPWLDRKGSSV 92
           RYF +  FL A  G++PSL W+SI WG+EL  KG R+K+G+GNH+   +DPW+       
Sbjct: 13  RYFSNCSFLDANIGHSPSLTWQSICWGKELLLKGLRFKIGDGNHVDCGKDPWIPSHNEFK 72

Query: 93  PL---GVNDLFKHERVKVLIDDHGTWKEQVVKGIFSPMDIEDILKIPIGNHLSKDEIIWN 152
           P+   G N +     V   I     W  Q++   F  +DI+ IL I +      D ++W+
Sbjct: 73  PVSFSGSNSM----PVSNFITADRVWNVQLLSCYFQQIDIDRILSILLSYFAGHDRLVWH 132

Query: 153 HDSKGLFSVKSAF--------REDWK---------------PNVYWDWLEDNLSEANLKL 212
           H   G++SVKS          +  WK                  Y   L     +   + 
Sbjct: 133 HSPNGIYSVKSGHALFGCKHAKNIWKLTKFQIDFRQAHNMFNGDYLYHLSATYQQHEFET 192

Query: 213 ALIILWSLWFFRNQVLHNEI----TVDFQLIYRQIDTY-KLKFQSRENAINVTSW----S 272
            L +LW +W  RN+V+H  I    T   Q   R  + + +LK   R  A+   +     S
Sbjct: 193 LLCVLWGIWTDRNKVVHGGIPRQPTAIVQYATRFYEDFNRLKSHVRPGAVTSNNHPSQPS 252

Query: 273 ENLSSHA-AWEPPQPNHWKLNCDASWFEKKNRGGCGWIARDSEDLL---------NNFST 306
            +++ H   W PPQ N +KLN DA+   ++ + G G I RD  D +          +F +
Sbjct: 253 PSINQHVQKWRPPQTNGFKLNVDAATDLEQKKLGIGAILRDHTDTVVAALSKVVQGSFKS 312

[Close]

BLAST of Tan0017680 vs. ExPASy TrEMBL
Match: A0A5B6WEY4 (Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_019877 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.3e-29
Identity = 86/282 (30.50%), Postives = 139/282 (49.29%), Query Frame = 0


Query: 33   RYFKDGDFLKAPFGNNPSLNWRSILWGRELFEKGYRWKVGNGNHIRIFEDPWLDRKGSSV 92
            RY+   +FL A  G+ PS  WRSI   REL   G  W++GNG  + I+ DPW+   G S 
Sbjct: 747  RYYPKTNFLSAKVGSYPSFTWRSICVARELIADGLFWRIGNGRSVNIWNDPWVPGPGRSC 806

Query: 93   PLGVNDLFKH-ERVKVLIDDHG-TWKEQVVKGIFSPMDIEDILKIPIGNHLSKDEIIWNH 152
             L V ++  H   V  LID+H  TWK+ ++  +      + IL IP+ +   +D ++W+H
Sbjct: 807  -LSVQNINTHWSTVNQLIDEHSFTWKKDIIYKLVDCDQAKRILNIPLAHSDEEDVLVWSH 866

Query: 153  DSKGLFSVKSAFREDWKPNVYW--------------------DWLEDN--------LSEA 212
            D+ G+++VKS    +   ++ W                    D  EDN        +++ 
Sbjct: 867  DNTGVYTVKSGSAPEDSEHLLWSCDVLRSIWNLLDLYVDLNGDSSEDNKLVRMFLTVTDE 926

Query: 213  NLKLALIILWSLWFFRNQVLHN--EITVDFQLIYRQIDTYKLKFQSRENAINVTSWSENL 272
              KL  I  W+LWF RN+++H   + ++D  L + +   Y+LK        + +S+S+N 
Sbjct: 927  KRKLLTISFWALWFMRNKMVHEGCKFSLDELLCFIRRYVYELKMSCTS---DFSSFSKNT 986

Query: 273  SSHAAWEPPQPNHWKLNCDASWFEKKNRGGCGWIARDSEDLL 283
               A W+PP P   KLN DAS+ +  N    G +  + + L+
Sbjct: 987  ---AFWKPPLPGIIKLNFDASFVKASNSAIVGVVRHNDKGLV 1021

[Close]

BLAST of Tan0017680 vs. ExPASy TrEMBL
Match: A0A5B6VSY9 (Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_022621 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.9e-28
Identity = 82/282 (29.08%), Postives = 134/282 (47.52%), Query Frame = 0


Query: 33  RYFKDGDFLKAPFGNNPSLNWRSILWGRELFEKGYRWKVGNGNHIRIFEDPWLDRKGSSV 92
           RY+   +FL A  G+ PS  WRSI   REL   G  W++GNG  I I+ DPW+   G S 
Sbjct: 687 RYYPKTNFLSAKVGSYPSFTWRSICGARELIAAGLCWRIGNGKSINIWNDPWVPGTGQSC 746

Query: 93  PLGVNDLFKH-ERVKVLIDDHG-TWKEQVVKGIFSPMDIEDILKIPIGNHLSKDEIIWNH 152
            L V ++  H + V  LID+   TWK+ ++  +      + IL IP+     +D ++W H
Sbjct: 747 -LSVQNMNIHWQTVNQLIDEQSFTWKKDIIHKLVDCDKAKRILNIPLARSDEEDLLVWRH 806

Query: 153 DSKGLFSVKSAFREDWKPNVYW--------------------DWLEDN--------LSEA 212
           D+ G++SVKS    +   ++ W                    D  EDN        +++ 
Sbjct: 807 DNTGVYSVKSGSAPEDSEHLLWYCEVLRTIWNLLDLYVDLDGDPSEDNKLVRMFIIVTDE 866

Query: 213 NLKLALIILWSLWFFRNQVLHN--EITVDFQLIYRQIDTYKLKFQSRENAINVTSWSENL 272
             KL  I  W++W+ RN+++H   + ++D  + + +   Y+L      N ++++      
Sbjct: 867 KRKLLTISFWAIWYMRNKMVHEGCKFSLDEIVCFIRRYVYELNLSCTSNLLSIS------ 926

Query: 273 SSHAAWEPPQPNHWKLNCDASWFEKKNRGGCGWIARDSEDLL 283
            + A W+PP P   KLN DAS+    N    G + R+   L+
Sbjct: 927 KNTAFWKPPLPGIIKLNFDASFVNATNSAIVGVVGRNDRGLI 961

[Close]

BLAST of Tan0017680 vs. ExPASy TrEMBL
Match: Q8S5K1 (Putative retroelement OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0011A24.23 PE=4 SV=2)

HSP 1 Score: 134.0 bits (336), Expect = 1.3e-27
Identity = 91/335 (27.16%), Postives = 140/335 (41.79%), Query Frame = 0


Query: 34   YFKDGDFLKAPFGNNPSLNWRSILWGRELFEKGYRWKVGNGNHIRIFEDPWLDRKGSSVP 93
            Y+ +G  +   FG N S  WR+I +G EL +KG  W++GNG  +R++ DPW+ R  S  P
Sbjct: 1459 YYPNGSLIDTSFGGNASPGWRAIEYGLELLKKGIIWRIGNGKSVRLWRDPWIPRSYSRRP 1518

Query: 94   LGVNDLFKHERVKVLIDDHGTWKEQVVKGIFSPMDIEDILKIPIGNHLSKDEIIWNHDSK 153
            +      +   V  LID  G+W    +   F PMD E IL I + + L  D I W+ D  
Sbjct: 1519 ISAKRNCRLRWVSDLIDQSGSWDTDKISQHFLPMDAEAILNIRLSSRLEDDFIAWHPDKL 1578

Query: 154  GLFSVKSAF------------------------REDWK-----------------PNVYW 213
            G FSV+SA+                           WK                 P V  
Sbjct: 1579 GRFSVRSAYHLAVALAHVDEGSSSSGNGNSRAWNALWKCNAPQKLNPLSNIRNGDPKVIL 1638

Query: 214  DWLEDNLSEANLKLALIILWSLWFFRNQVLHNEITVDFQLIYRQIDTYKLKF-------- 273
            D LE +  E  + L L++LW +W  RN+++H +      +  R I++Y L          
Sbjct: 1639 DLLEQSQPEDQVML-LMVLWRIWHTRNEIVHGKPAPGMLVSKRFIESYVLSLAEIKQHPQ 1698

Query: 274  ---QSRENAINVTSWSENLSSHA------AWEPPQPNHWKLNCDASWFEKKNRGGCGWIA 311
               +  ++ ++V     +    +       W  P P   KLN D S+ E   +GG G + 
Sbjct: 1699 ASPEKGKHVVDVVQKKLHSIKRSREPVPDKWLKPLPGSMKLNVDGSFQESDGKGGIGAVL 1758

[Close]

BLAST of Tan0017680 vs. ExPASy TrEMBL
Match: Q33AJ4 (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os10g09610 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.3e-27
Identity = 91/335 (27.16%), Postives = 140/335 (41.79%), Query Frame = 0


Query: 34   YFKDGDFLKAPFGNNPSLNWRSILWGRELFEKGYRWKVGNGNHIRIFEDPWLDRKGSSVP 93
            Y+ +G  +   FG N S  WR+I +G EL +KG  W++GNG  +R++ DPW+ R  S  P
Sbjct: 1424 YYPNGSLIDTSFGGNASPGWRAIEYGLELLKKGIIWRIGNGKSVRLWRDPWIPRSYSRRP 1483

Query: 94   LGVNDLFKHERVKVLIDDHGTWKEQVVKGIFSPMDIEDILKIPIGNHLSKDEIIWNHDSK 153
            +      +   V  LID  G+W    +   F PMD E IL I + + L  D I W+ D  
Sbjct: 1484 ISAKRNCRLRWVSDLIDQSGSWDTDKISQHFLPMDAEAILNIRLSSRLEDDFIAWHPDKL 1543

Query: 154  GLFSVKSAF------------------------REDWK-----------------PNVYW 213
            G FSV+SA+                           WK                 P V  
Sbjct: 1544 GRFSVRSAYHLAVALAHVDEGSSSSGNGNSRAWNALWKCNAPQKLNPLSNIRNGDPKVIL 1603

Query: 214  DWLEDNLSEANLKLALIILWSLWFFRNQVLHNEITVDFQLIYRQIDTYKLKF-------- 273
            D LE +  E  + L L++LW +W  RN+++H +      +  R I++Y L          
Sbjct: 1604 DLLEQSQPEDQVML-LMVLWRIWHTRNEIVHGKPAPGMLVSKRFIESYVLSLAEIKQHPQ 1663

Query: 274  ---QSRENAINVTSWSENLSSHA------AWEPPQPNHWKLNCDASWFEKKNRGGCGWIA 311
               +  ++ ++V     +    +       W  P P   KLN D S+ E   +GG G + 
Sbjct: 1664 ASPEKGKHVVDVVQKKLHSIKRSREPVPDKWLKPLPGSMKLNVDGSFQESDGKGGIGAVL 1723

[Close]

BLAST of Tan0017680 vs. ExPASy TrEMBL
Match: A0A6J1DRA0 (uncharacterized protein LOC111022423 OS=Momordica charantia OX=3673 GN=LOC111022423 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.1e-27
Identity = 61/131 (46.56%), Postives = 82/131 (62.60%), Query Frame = 0


Query: 32  GRYFKDGDFLKAPFGNNPSLNWRSILWGRELFEKGYRWKVGNGNHIRIFEDPWLDRKGSS 91
           G+YFK G FL+A  G  PS  WRSILWGR+LF+KGYRWKVGNG  I +  DPWL R G+ 
Sbjct: 552 GKYFKTGSFLQAKLGARPSYAWRSILWGRDLFKKGYRWKVGNGFSINLSSDPWLPRDGNF 611

Query: 92  VPLGVNDLFKHERVKVLIDDHGTWKEQVVKGIFSPMDIEDILKIPIGNHLSKDEIIWNHD 151
            P+  +   ++  V  L++  G W E  V+  F   + + IL+ P+ +    DEIIW  D
Sbjct: 612 SPVFTHIHVRNFSVAWLMEGRGRWDEIKVRESFIVSEADIILQTPLPSQDKDDEIIWGMD 671

Query: 152 SKGLFSVKSAF 163
             G+FSV+SA+
Sbjct: 672 KTGIFSVRSAY 682

[Close]

BLAST of Tan0017680 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 83.2 bits (204), Expect = 4.9e-16
Identity = 46/142 (32.39%), Postives = 73/142 (51.41%), Query Frame = 0


Query: 30  YLGRYFKDGDFLKAPFGNNPSLNWRSILWGRELFEKGYRWKVGNGNHIRIFEDPWLDRKG 89
           +  RYF   D L AP G+ PS  W+SI   +E+  +G R  VGNG  I I+   WLD K 
Sbjct: 88  FKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEILRQGARAVVGNGEDIIIWRHKWLDSKP 147

Query: 90  SSVPLGVNDLFKHE--------RVKVLIDDHG-TWKEQVVKGIFSPMDIEDILKIPIGNH 149
           +S  L +  +   E        +V  LID+ G  W++ V++ +F  ++ + I ++  G  
Sbjct: 148 ASAALRMQRVPPQEYASVSSILKVSDLIDESGREWRKDVIEMLFPEVERKLIGELRPGGR 207

Query: 150 LSKDEIIWNHDSKGLFSVKSAF 163
              D   W++ S G ++VKS +
Sbjct: 208 RILDSYTWDYTSSGDYTVKSGY 229

[Close]

BLAST of Tan0017680 vs. TAIR 10
Match: AT3G09510.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 70.9 bits (172), Expect = 2.5e-12
Identity = 40/133 (30.08%), Postives = 63/133 (47.37%), Query Frame = 0


Query: 33  RYFKDGDFLKAPFGNNPSLNWRSILWGRELFEKGYRWKVGNGNHIRIFEDPWLDRKGSSV 92
           RYFKD   L A      S  W S+L G  L +KG R  +G+G +IRI  D  +D      
Sbjct: 4   RYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSHPPR- 63

Query: 93  PLGVNDLFKHERVKVLIDDHGT---WKEQVVKGIFSPMDIEDILKIPIGNHLSKDEIIWN 152
           PL   + +K   +  L +  G+   W +  +       D   I +I +      D+IIWN
Sbjct: 64  PLNTEETYKEMTINNLFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWN 123

Query: 153 HDSKGLFSVKSAF 163
           +++ G ++V+S +
Sbjct: 124 YNTTGEYTVRSGY 135

[Close]

BLAST of Tan0017680 vs. TAIR 10
Match: ATMG00310.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 52.4 bits (124), Expect = 9.3e-07
Identity = 20/53 (37.74%), Postives = 30/53 (56.60%), Query Frame = 0


Query: 33  RYFKDGDFLKAPFGNNPSLNWRSILWGRELFEKGYRWKVGNGNHIRIFEDPWL 86
           RYF     ++   G  PS  WRSI+ GREL  +G    +G+G H +++ D W+
Sbjct: 92  RYFPHSSMMECSVGTRPSYAWRSIIHGRELLSRGLLRTIGDGIHTKVWLDRWI 144

The following BLAST results are available for this feature:

BLAST of Tan0017680 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93295	1.3e-05	37.74	Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Tan0017680 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023897447.1	1.2e-32	31.37	uncharacterized protein LOC112009345 [Quercus suber]	[more]
KAA3479362.1	2.8e-29	30.50	reverse transcriptase [Gossypium australe]	[more]
XP_023870384.1	3.6e-29	33.07	uncharacterized protein LOC111982984, partial [Quercus suber]	[more]
KAA3472112.1	4.0e-28	29.08	reverse transcriptase [Gossypium australe]	[more]
XP_030487365.1	6.8e-28	29.56	uncharacterized protein LOC115704292 [Cannabis sativa]	[more]

BLAST of Tan0017680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5B6WEY4	1.3e-29	30.50	Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_019877 PE=4 SV=1	[more]
A0A5B6VSY9	1.9e-28	29.08	Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_022621 PE=4 SV=1	[more]
Q8S5K1	1.3e-27	27.16	Putative retroelement OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0011A24....	[more]
Q33AJ4	1.3e-27	27.16	Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica ...	[more]
A0A6J1DRA0	2.1e-27	46.56	uncharacterized protein LOC111022423 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]

BLAST of Tan0017680 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29090.1	4.9e-16	32.39	Ribonuclease H-like superfamily protein	[more]
AT3G09510.1	2.5e-12	30.08	Ribonuclease H-like superfamily protein	[more]
ATMG00310.1	9.3e-07	37.74	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46736	FAMILY NOT NAMED	coord: 54..281

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0017680.1	Tan0017680.1	mRNA