Tan0017396 (gene) Snake gourd v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CGAAACACAGTAATAAAAGGCTAAACCCTACCATCGAAGTCTTCTTTCTCCCCAGACTTTACAGAAATCAGATCGAGGGAAGAATCTCTCCGTGCATCTTCTCATCTTCCTTCTCTTTCCTTCAGGTAATTAAGCCCTTCCGATTTCTGGTTTCGCTGTTTCGTTTCTCGATGCATAGACGAAGCTTCGCAATATTCTTGAACGAACCCAAACCCACATGAAAGCTATCAATAGTCGTTCATAGCCACTTTCTACTTGTTTCGATCATTCGGAATTAGTTTTTTTTTTTAAAGGTTCATTCTTACTTTGAATTATCTCTTTCCGCTTCTCTCGGTAAAAAAATTGGGGGAAGTGAAGAGAGGAGCCTCTTCGTCTAACCCTTTCGATTCCTTCTTCATTTAGCGGGTGGATTTTCTTGCCTTTTTCTCTTGTGGGTATGTGATCTTCAAGACTTTAATATGTATCTTGTAGCTTAGCTATCTGGAGTATGGGTACGAGCAATTGAGAGGTTTAACAGTCGAACCGGAAATCCTGAGCCTGTGAAGTGTGGTTTAGGGTTTAACAGTTGAAGCTTTTATAAGTTTGACTGTTTAGGATGATGTGTGGGTTTCATTGGATTAACTACCATTCTAATTTTTATCGTTTTTCTATTTTAGCAAGTTTTTGGTTTGAATAGACAAGAAATTTTGACGATATGCATCTTAAGTGTAGACCTCACCTGGTAATTGTTTTGGATAGGTTGAAACATGAGAAGATACAGTCCACCATATCATAGTCCTCCGAGGAGAGGATATGGCGGTCGAGGAAGAAGCCCCCCAGGAAGGGGTTATGGTGGTGGTGGTGGTGGTGGTGGGGGGTATGGAAGACGAAGGGAACAGGCTCATGGTAGCCTTTTGGTTAGAAATATTCCTATGGATTGCAGGTCAGGATTTGACCACGTTTCTTTTTTTTTTTTCAATTACCATATAGCTTTGTCCAATGTAGGTTTCAGTACTGCTAGTTCATGAATTTGTTGTTATCTCTCACTGATTTTTAACAACTTGGCTTCTGGTTATATTGATACTTGCAGGCCAGAAGAGCTTAGAGCTCCATTTGAGAGGTTTGGACTTGTTCGAGATGTGTATATTCCGAAAGATTATTACACAGGGTGAGCATCTGTTGTTTCTTTTTCTTATTTATTTTTCACACTGCTCCACCATGGTATGTGATTGAATTTATTAGCTGTTATTCAATCTGATTCCTGAACGTGTACTTTTACATTCCTTGTGACCGTGAGTTAATTTGATAAGGACACATCTTTGTATGGTTAATATCTGGACTTCTGAGCACCAATTTGCACTAAAAATTAATCAAATTAACCTCAAACTGGGCTCAGGTGGTAATTTTAGGTTTACTGGTTAAGCATCAAGCCAAGCCTTTTGCATTAGAAATTGATTCTGATTACTCACTCTTGTTTGATGCTCTCAGTCATGTGTCATAATTCTAAGCTTCTCATTTAGACCAATAATTGATGTAAGTCAAAATATATCGAGCACGCACAAAGATTTTCTCTTTTGCATTTCAAGATTCTATTTTCAGAACAATGTCTAACTTTCTTTTTCTTCTTTCTGGAAAAAATTCTTATGTGCCTTCATACGCAAGATGAAATAAACTCTCATGCAATTGTCAGGGAACTTTTTTACAAATATTTTTCAACTTCTTTATCCCAAAAAAAAAAATAATAAATAAAAAATTCTGATCAATTCTTGAGGGTGTACGTTTGTGCATTGAGTTCTAAATTTATAGAGGAAAATTTTAGATCTTATGGAAAATCCGGTTGAGTTTGTTATTCATAGTTAGGGAATGCAGAGGATGAAAAATGTCAAACAAAATTTCACCAGACCTTATTTTTTCTGGGTGAATTTTATTCCCATTTCATAGTGTGTTAAATTTTGAACTGCTTTGTCAGGGGGCATATTGGTTTGAACTTTGAAGTTAAAACAAGCCCAAGCCCCTATTAATGAGGGTCTACTACTTTTCACTGCCTAACATATTGCTCATCAAGAATGTAAAGAGTAATATCGAAATGAGGGTCTCTCTCTGAGGAGATATTAGATAATTACCCCATCAATAGAAGTTGATGAGGATGAAGATAGATTCTTGAGATATTGAAGCTAACAAGGTGAAGGTTTTAAGGTTGTGGAATGTTTGTTCAAGTGCTTCATGTGTTTCCAAGTATGTGAAGAATTTTCAAGTCATGAATTGTTGGTTTCAAGTACTTATATCAAGAAATGTGAAGATTTTTCAAGTCAAGTTACGTTGAATCGAAGTGCTTATAGTTACAAGAATATGAAGATTTTTGAAGTCTCTTGCCTCTTTCATGCTTGATTGTAAAGAGAAGGTTAGCTACTGAACTTTGCAATTAGCTGCTTTATGTAACTTCAGCCCCAGCTTTGAAGAAAGCAGTCTGAAGTTAATATTGGATATGAAAAGAAAGCTATTTAGTTTATGGCATCCTGAATCCTTTTAGCCATGAAAAGTATACTAATGTTATCATTCAGTCTAGTTACCCAAGATTTTTTTTCCAGAAGAGTTTCTTACTTTCATAATGAAAATTTTGTTTGAATTCTTTGTAGTGAACCACGAGGATTTGCATTTGTGGAGTTTGTCGATCCTTATGAGGCTTCTGAAGCTCAGTATCATATGAATGGGAAAAAATTTGCGGGTAGGGAGATTACTGTGGTCCTTGCTGCAGAGTCAAGGAAGAGGCCAGAACAGATGCGCCAAAGGAGTAGAAGGTGGTTTGTTTGTTCTCTTTTACCTCGTTTTCTCCATGGTTTCAAGACTGTAATTCTCATTATGTTTTAAGCAATCTAAAAATCCTACTCTGTCCATTCAGTGTGTTCAATGGCAAATAGCCTTTTATGATGTTTATTTAGCTACCAGTTACTTGTGTTTTACTATTCTATTTTCCCTTTCTGTAGGGGACCATCTGGCTATGGTGGACGTCGTTCTTATTATGGTATGGGTACTAGTAGTCTATGTTGAAATTCGATGCAATTTTCTCATTTTTCTAGTTCATGTTACTTCTACTTCTTGATTGTGTTCAAGAAGACTATACTCTATAGCATCACTTCTTGTTATGGAACTCTTGGACATTACAGCTTGGAGCAGCTTTCGATGATGCAGTAGTAACTAGCATATGGGATTTATTTCCAATATGTTAGATTGCACGTGTATTATTCTTTGACTTTTCTTGAGACTTAGGATTGGTGTATTGATGTACCTACCTATTCAATCGAGCTTTCTTTGTAAGCTCCAAGTTGTGTTCATATAATATCCTTTAAACGAACCTTTTTTTTTTGTCTAATGAACTAAGGAAAGTTCCTCACATGTCACATACGGATGGATTTTCGTATTTGATTGATCCTTCAAACATTCTTTCCCTAGTTTGATGCTTCTGTTTGGAGATTTTATCGATAACCCTTTCCACATGGCCATCCCTTAGTAGCTTCTTTTATTAGGTTGAAATATAAGCATATAATAATTCTTTTGTTTCTGTTAACCTAATGGTCACTCGTTTGGTATGAATTTGTGAATTTGCAGGCTTGCAGGTTTTGTTAAATGTTAATTGATTGAATTAAAAATACAAACCTCCTCTGTACATTTAAATTGTTCGTTGATATTACAGGTTTCAATTTGGTACTAAATTTCAAGTACACATTCTAAAGTTTGGAATCAAATCAATCATTAACTATTGTACTACACAAAATTAGTCCATATTGGATTATTGTATTCAATGATCAACATGGTTTCAGGATATAATTGATCATGATTTTTTTTGTGACTTTATAGGGCGTTCTAGATCTCGTTCAGTATCCCGATCACGCTCTCCCCATCATCCTTCAGGTTCAAGAAGTAGATATCGATCAAGGTAATCTATTTAAAACAGAAATGTTCATATTTATTTATGCTCTAGGTAGTAAATATGCCAAATGTAATTGTCAGGTCCTACTCTCCTGCTCCAAGATGGCGGGGCGACTATTCTGTATCCCCCAGTAGACGGCATGCAGACTACCCTAGATCACCAAGAGGTGCTCCTCGTGAGCGAGATGGTGAGAGGAGTCAGCAAGTATATTCTCCAGGTTATGATAATGCTGATGGTCATGATCACGATGGAAATGGAAATGGATATCATGAGTAAGTTGAATGATTTACTGATGACTTATTTCTTTTTGAGAGCATCCCGAATTATGCGACTATTTTTAGTGTTTCTCTGTTTCTGTGTTTCTTCATGCATTGCTTATTACATACGCGAGTCTCATGATTGAGAATGTTATCTTTCAGTTTGTTTAACCTTAATTTTATCATCTTTGTTTACTATGCTTGTTTAAAAGTGTGTTTAGTTTTGTTTTATTCATTCGTCAATCCCTTTTCTCTTTTTTTCCCCCTTCTTTAGAAAGTCTGCATTTGAAAGAGAGGATGCACGAGCTAACTGGAGGTCTTCTCCTGGTAGAAGGCCGTCTCCTCCTGGTAGAACATCAAGATCCCCTTCAGGGTCCCGATCCCGCTCTGCCGATCCGTCACCAAGACACGGCAGATGATTTTTCTAACCTTCGGTTCTAATATTTTACGTTTGTTACCCTTAAGTTAGAATCGACTATCCAGTAAAAATTCTAAGATTGTATTTTGTAAGATGGTGTTCTTAGTGTTCGGGTTTTCAAGACATGGGCAATTTTCTTTGCTCTCATTTGCAGTTCAAAATTATTATGGTAGACCATCCAACCTGTTGCTACTTTTCTGGATTGTGCATGCTCTTCTTCTTCTTCATATATCTCATTCACGATATGTTATCGGTATTAAAATTTCTACCTTTCATTTGATGGTGC CGAAACACAGTAATAAAAGGCTAAACCCTACCATCGAAGTCTTCTTTCTCCCCAGACTTTACAGAAATCAGATCGAGGGAAGAATCTCTCCGTGCATCTTCTCATCTTCCTTCTCTTTCCTTCAGGTTGAAACATGAGAAGATACAGTCCACCATATCATAGTCCTCCGAGGAGAGGATATGGCGGTCGAGGAAGAAGCCCCCCAGGAAGGGGTTATGGTGGTGGTGGTGGTGGTGGTGGGGGGTATGGAAGACGAAGGGAACAGGCTCATGGTAGCCTTTTGGTTAGAAATATTCCTATGGATTGCAGGCCAGAAGAGCTTAGAGCTCCATTTGAGAGGTTTGGACTTGTTCGAGATGTGTATATTCCGAAAGATTATTACACAGGTGAACCACGAGGATTTGCATTTGTGGAGTTTGTCGATCCTTATGAGGCTTCTGAAGCTCAGTATCATATGAATGGGAAAAAATTTGCGGGTAGGGAGATTACTGTGGTCCTTGCTGCAGAGTCAAGGAAGAGGCCAGAACAGATGCGCCAAAGGAGTAGAAGGGGACCATCTGGCTATGGTGGACGTCGTTCTTATTATGGGCGTTCTAGATCTCGTTCAGTATCCCGATCACGCTCTCCCCATCATCCTTCAGGTTCAAGAAGTAGATATCGATCAAGGTCCTACTCTCCTGCTCCAAGATGGCGGGGCGACTATTCTGTATCCCCCAGTAGACGGCATGCAGACTACCCTAGATCACCAAGAGGTGCTCCTCGTGAGCGAGATGGTGAGAGGAGTCAGCAAGTATATTCTCCAGGTTATGATAATGCTGATGGTCATGATCACGATGGAAATGGAAATGGATATCATGAAAAGTCTGCATTTGAAAGAGAGGATGCACGAGCTAACTGGAGGTCTTCTCCTGGTAGAAGGCCGTCTCCTCCTGGTAGAACATCAAGATCCCCTTCAGGGTCCCGATCCCGCTCTGCCGATCCGTCACCAAGACACGGCAGATGATTTTTCTAACCTTCGGTTCTAATATTTTACGTTTGTTACCCTTAAGTTAGAATCGACTATCCAGTAAAAATTCTAAGATTGTATTTTGTAAGATGGTGTTCTTAGTGTTCGGGTTTTCAAGACATGGGCAATTTTCTTTGCTCTCATTTGCAGTTCAAAATTATTATGGTAGACCATCCAACCTGTTGCTACTTTTCTGGATTGTGCATGCTCTTCTTCTTCTTCATATATCTCATTCACGATATGTTATCGGTATTAAAATTTCTACCTTTCATTTGATGGTGC ATGAGAAGATACAGTCCACCATATCATAGTCCTCCGAGGAGAGGATATGGCGGTCGAGGAAGAAGCCCCCCAGGAAGGGGTTATGGTGGTGGTGGTGGTGGTGGTGGGGGGTATGGAAGACGAAGGGAACAGGCTCATGGTAGCCTTTTGGTTAGAAATATTCCTATGGATTGCAGGCCAGAAGAGCTTAGAGCTCCATTTGAGAGGTTTGGACTTGTTCGAGATGTGTATATTCCGAAAGATTATTACACAGGTGAACCACGAGGATTTGCATTTGTGGAGTTTGTCGATCCTTATGAGGCTTCTGAAGCTCAGTATCATATGAATGGGAAAAAATTTGCGGGTAGGGAGATTACTGTGGTCCTTGCTGCAGAGTCAAGGAAGAGGCCAGAACAGATGCGCCAAAGGAGTAGAAGGGGACCATCTGGCTATGGTGGACGTCGTTCTTATTATGGGCGTTCTAGATCTCGTTCAGTATCCCGATCACGCTCTCCCCATCATCCTTCAGGTTCAAGAAGTAGATATCGATCAAGGTCCTACTCTCCTGCTCCAAGATGGCGGGGCGACTATTCTGTATCCCCCAGTAGACGGCATGCAGACTACCCTAGATCACCAAGAGGTGCTCCTCGTGAGCGAGATGGTGAGAGGAGTCAGCAAGTATATTCTCCAGGTTATGATAATGCTGATGGTCATGATCACGATGGAAATGGAAATGGATATCATGAAAAGTCTGCATTTGAAAGAGAGGATGCACGAGCTAACTGGAGGTCTTCTCCTGGTAGAAGGCCGTCTCCTCCTGGTAGAACATCAAGATCCCCTTCAGGGTCCCGATCCCGCTCTGCCGATCCGTCACCAAGACACGGCAGATGA MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGYGRRREQAHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFVDPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSYYGRSRSRSVSRSRSPHHPSGSRSRYRSRSYSPAPRWRGDYSVSPSRRHADYPRSPRGAPRERDGERSQQVYSPGYDNADGHDHDGNGNGYHEKSAFEREDARANWRSSPGRRPSPPGRTSRSPSGSRSRSADPSPRHGR Homology
BLAST of Tan0017396 vs. ExPASy Swiss-Prot
Match: Q8L3X8 (Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=3702 GN=SCL30 PE=1 SV=1) HSP 1 Score: 282.0 bits (720), Expect = 7.8e-75 Identity = 182/294 (61.90%), Postives = 203/294 (69.05%), Query Frame = 0
BLAST of Tan0017396 vs. ExPASy Swiss-Prot
Match: Q9SEU4 (Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=3702 GN=SCL33 PE=1 SV=1) HSP 1 Score: 148.3 bits (373), Expect = 1.4e-34 Identity = 128/294 (43.54%), Postives = 155/294 (52.72%), Query Frame = 0
BLAST of Tan0017396 vs. ExPASy Swiss-Prot
Match: Q9LHP2 (Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX=3702 GN=SCL30A PE=1 SV=1) HSP 1 Score: 139.8 bits (351), Expect = 4.8e-32 Identity = 121/291 (41.58%), Postives = 151/291 (51.89%), Query Frame = 0
BLAST of Tan0017396 vs. ExPASy Swiss-Prot
Match: Q1PDV2 (Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=3702 GN=SCL28 PE=1 SV=1) HSP 1 Score: 104.0 bits (258), Expect = 2.9e-21 Identity = 90/228 (39.47%), Postives = 115/228 (50.44%), Query Frame = 0
BLAST of Tan0017396 vs. ExPASy Swiss-Prot
Match: Q9BRL6 (Serine/arginine-rich splicing factor 8 OS=Homo sapiens OX=9606 GN=SRSF8 PE=1 SV=1) HSP 1 Score: 96.7 bits (239), Expect = 4.7e-19 Identity = 98/247 (39.68%), Postives = 123/247 (49.80%), Query Frame = 0
BLAST of Tan0017396 vs. NCBI nr
Match: XP_022139086.1 (serine/arginine-rich SC35-like splicing factor SCL30 [Momordica charantia]) HSP 1 Score: 526.2 bits (1354), Expect = 1.8e-145 Identity = 275/289 (95.16%), Postives = 278/289 (96.19%), Query Frame = 0
BLAST of Tan0017396 vs. NCBI nr
Match: XP_008461655.1 (PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Cucumis melo] >XP_008461656.1 PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Cucumis melo] >XP_008461657.1 PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Cucumis melo]) HSP 1 Score: 504.6 bits (1298), Expect = 5.7e-139 Identity = 266/289 (92.04%), Postives = 270/289 (93.43%), Query Frame = 0
BLAST of Tan0017396 vs. NCBI nr
Match: XP_023549438.1 (serine/arginine-rich SC35-like splicing factor SCL30 [Cucurbita pepo subsp. pepo] >XP_023549446.1 serine/arginine-rich SC35-like splicing factor SCL30 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 500.7 bits (1288), Expect = 8.2e-138 Identity = 266/291 (91.41%), Postives = 270/291 (92.78%), Query Frame = 0
BLAST of Tan0017396 vs. NCBI nr
Match: XP_022987464.1 (serine/arginine-rich SC35-like splicing factor SCL30 [Cucurbita maxima] >XP_022987470.1 serine/arginine-rich SC35-like splicing factor SCL30 [Cucurbita maxima]) HSP 1 Score: 500.4 bits (1287), Expect = 1.1e-137 Identity = 266/292 (91.10%), Postives = 270/292 (92.47%), Query Frame = 0
BLAST of Tan0017396 vs. NCBI nr
Match: KAG7030730.1 (Serine/arginine-rich SC35-like splicing factor SCL30, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 499.2 bits (1284), Expect = 2.4e-137 Identity = 266/292 (91.10%), Postives = 273/292 (93.49%), Query Frame = 0
BLAST of Tan0017396 vs. ExPASy TrEMBL
Match: A0A6J1CBL6 (serine/arginine-rich SC35-like splicing factor SCL30 OS=Momordica charantia OX=3673 GN=LOC111010084 PE=4 SV=1) HSP 1 Score: 526.2 bits (1354), Expect = 8.8e-146 Identity = 275/289 (95.16%), Postives = 278/289 (96.19%), Query Frame = 0
BLAST of Tan0017396 vs. ExPASy TrEMBL
Match: A0A1S3CFP8 (serine/arginine-rich SC35-like splicing factor SCL30 OS=Cucumis melo OX=3656 GN=LOC103500205 PE=4 SV=1) HSP 1 Score: 504.6 bits (1298), Expect = 2.7e-139 Identity = 266/289 (92.04%), Postives = 270/289 (93.43%), Query Frame = 0
BLAST of Tan0017396 vs. ExPASy TrEMBL
Match: A0A6J1JIZ1 (serine/arginine-rich SC35-like splicing factor SCL30 OS=Cucurbita maxima OX=3661 GN=LOC111485002 PE=4 SV=1) HSP 1 Score: 500.4 bits (1287), Expect = 5.2e-138 Identity = 266/292 (91.10%), Postives = 270/292 (92.47%), Query Frame = 0
BLAST of Tan0017396 vs. ExPASy TrEMBL
Match: A0A6J1H0N2 (serine/arginine-rich SC35-like splicing factor SCL30 OS=Cucurbita moschata OX=3662 GN=LOC111458935 PE=4 SV=1) HSP 1 Score: 496.9 bits (1278), Expect = 5.7e-137 Identity = 263/289 (91.00%), Postives = 268/289 (92.73%), Query Frame = 0
BLAST of Tan0017396 vs. ExPASy TrEMBL
Match: A0A6J1FWZ5 (serine/arginine-rich SC35-like splicing factor SCL30 OS=Cucurbita moschata OX=3662 GN=LOC111447732 PE=4 SV=1) HSP 1 Score: 493.0 bits (1268), Expect = 8.3e-136 Identity = 262/289 (90.66%), Postives = 269/289 (93.08%), Query Frame = 0
BLAST of Tan0017396 vs. TAIR 10
Match: AT3G55460.1 (SC35-like splicing factor 30 ) HSP 1 Score: 282.0 bits (720), Expect = 5.6e-76 Identity = 182/294 (61.90%), Postives = 203/294 (69.05%), Query Frame = 0
BLAST of Tan0017396 vs. TAIR 10
Match: AT1G55310.2 (SC35-like splicing factor 33 ) HSP 1 Score: 149.4 bits (376), Expect = 4.3e-36 Identity = 106/220 (48.18%), Postives = 132/220 (60.00%), Query Frame = 0
BLAST of Tan0017396 vs. TAIR 10
Match: AT1G55310.1 (SC35-like splicing factor 33 ) HSP 1 Score: 148.3 bits (373), Expect = 9.6e-36 Identity = 128/294 (43.54%), Postives = 155/294 (52.72%), Query Frame = 0
BLAST of Tan0017396 vs. TAIR 10
Match: AT1G55310.3 (SC35-like splicing factor 33 ) HSP 1 Score: 143.7 bits (361), Expect = 2.4e-34 Identity = 129/306 (42.16%), Postives = 157/306 (51.31%), Query Frame = 0
BLAST of Tan0017396 vs. TAIR 10
Match: AT3G13570.1 (SC35-like splicing factor 30A ) HSP 1 Score: 139.8 bits (351), Expect = 3.4e-33 Identity = 121/291 (41.58%), Postives = 151/291 (51.89%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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