Tan0017202 (gene) Snake gourd v1

Overview
NameTan0017202
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
Description50S ribosomal protein L23, chloroplastic
LocationLG04: 45857863 .. 45860083 (+)
RNA-Seq ExpressionTan0017202
SyntenyTan0017202
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTCATTCTTCTTTCTAGGGCAGTATCACTCCGCTCGTAGCCGCCGGTAACCTCTCTCTCTCGGTCTCTCTTGAATGCTGTCAATGTTCATTTTCCGTTTTCATGTTTATAATTTCTGTCTGTCTTTAACTGACAAGAATCAACAGTCTTGTTCAATTTTGTCTATGCCTCAAGACTTCAGGATCTTTCCCTTAGTCTTATCTTTTGTTTTTGATTTGTTTGTTGTAGTTGGAGAGTAGTGTTTTCATCTTTGATTTGTTTGCTTGGAGAGTAGTTCCTTAATGCGATTGGTGTTGATTATTTTCCTCCTGTTTCTCTGTTTGGTTCTGGCAGGAGGGTAATTTTGATACAGGGTTTTCAACGATGGCACCTAAAGGTATGTGCGCATTGTGTTTTTGTGGTTGTTTCAGAACGGAATGTTCATTTATTCGAATCTGTGTGTTCCATGGTAATCTAGTACAGGGCTAGTATCGAAACATAATTTATGGAATCAACTTCTGCTTTGAGCTACATGAATTACTGGGTTTTCGGCGTGCCTGGTGTTAATGGGAATTTATGTTCTTCGTTCGCTCGAAATAATTTGTGGTTAGGATTTACATTTAAGCATGCTATATTGCTGAGAAGATAGGTAGTTGCGAGGAATCCTCTCAAGATTCGCCAATCTAGTTGGCACTAACTCCTTGAAATTGTTAGTGTAATATGTCCTCTTTATTTTATTCACTGCACTTCCCTTCGAGTTTTTCATATGTTTTTTTTTTCTGGTTTGATAGAAAACAAGTTCATGGGTATTTTTGAATGTGAGTTGTATTAAATATACTGGAGGAATGGAATCTGAGCTTAATATACTGCCCTAGCTGGATACTCTTGAGATTTTGCAATTCTCTGTTGTGTTCTATTCTGAATTAATGGTTTTGCAGCTGACAACACCAAAAAGGCTGATCCTAAAGCGCAAGCCCTCAAGACTGCTAAGGCAGTCAAGTCTGGGCCAACTTTCAAGAAGGCTAAGAAGATCAGAACATCGGTCACGTTCCATCGCCCAAAGACATTGAAGAAGGATAGGAATCCCAAGTATCCTCGGATCAGTGCGACTCCTAGGAACAAGTTGGATCAATACCAAATTCTTAAATATCCATTGACCACTGAGTCTGCAATGAAGAAGATTGAGGATAATAACACCCTTGTTTTTATTGTCGATATTCGTGCCGACAAGAAAAAGATTAAAGATGCTGTGAAGAAGATGTATGACATTCAGACCAAGAAAGTGAACACTTTAATCAGGTATGCATGCATGAATTTAGAAAACTGAAAATAAAATGGTATGCACAATCAAACCCAAACAGTCAAGCAATTATAGCTGAGGTATTACTATTGGCAAAGCTAGAAAGAATCAATATGAACTATTCTTTCTTCTGTTCCATGCCACCTTTCTATGTATGATGATGGTATACTTTAATAGCAAGTGTAGGTTAAACCATCATCATACATAGAAAGGTGGCATGGAACAGAAGAAAGAATAGTTCATATTGATTCTTTCTAGCTTTGCCAATAGTAATACCTCAGCTATAATTGCTTGACTGTTTGGGTTTGATTGTGCATACCATTTTATTTTCAGTTTTCTTTTCATAATGAATAGAGTTAAAATTGATTAGTTGAATACATGAACTCTACTTTGGAATGATGACTATTGTCCTAACAATGTATGGTCCTACATGGATGCAGGCCTGATGGAACAAAAAAGGCATATGTTAGGTTAACCCCAGACTATGATGCTTTAGACGTGGCAAACAAAATTGGAATTATCTAAATTTCGTAGGGGAGTATGATGCTTTAGGCCTGATGGAACAAAATTTTCATTTTAGTTGTGACAATTTTGTTTAGATATCTGAGTGCAGTTTGTCGGGACTCTAATCTTATTATCTGTTTTTTTTTTAATTTATTTAATTAATAGATTGGTAATTATTAGCTAGCTCGGGTTGACTGAGTTCAAAATACTTGTGGAATATGTTTGAATCATTTGTATTAGTTTGGCTTTAAACACCTTTGCCACGCTTCTGAATTCTGTTCTTTGTAACTTTTGACTTCTTAATTAAGGGGCATGACACTCAACTAAACTACCCTAGGATGGCTTTGTGGTCATACATGGTGGTGCCTACTAAGAATTTATAATCTTACGAGTTTCTTTCAAAACCAAACGTAAATTAGTTAAGCGGTTGTTTTGGAG

mRNA sequence

TCTCATTCTTCTTTCTAGGGCAGTATCACTCCGCTCGTAGCCGCCGGAGGGTAATTTTGATACAGGGTTTTCAACGATGGCACCTAAAGCTGACAACACCAAAAAGGCTGATCCTAAAGCGCAAGCCCTCAAGACTGCTAAGGCAGTCAAGTCTGGGCCAACTTTCAAGAAGGCTAAGAAGATCAGAACATCGGTCACGTTCCATCGCCCAAAGACATTGAAGAAGGATAGGAATCCCAAGTATCCTCGGATCAGTGCGACTCCTAGGAACAAGTTGGATCAATACCAAATTCTTAAATATCCATTGACCACTGAGTCTGCAATGAAGAAGATTGAGGATAATAACACCCTTGTTTTTATTGTCGATATTCGTGCCGACAAGAAAAAGATTAAAGATGCTGTGAAGAAGATGTATGACATTCAGACCAAGAAAGTGAACACTTTAATCAGGCCTGATGGAACAAAAAAGGCATATGTTAGGTTAACCCCAGACTATGATGCTTTAGACGTGGCAAACAAAATTGGAATTATCTAAATTTCGTAGGGGAGTATGATGCTTTAGGCCTGATGGAACAAAATTTTCATTTTAGTTGTGACAATTTTGTTTAGATATCTGAGTGCAGTTTGTCGGGACTCTAATCTTATTATCTGTTTTTTTTTTAATTTATTTAATTAATAGATTGGTAATTATTAGCTAGCTCGGGTTGACTGAGTTCAAAATACTTGTGGAATATGTTTGAATCATTTGTATTAGTTTGGCTTTAAACACCTTTGCCACGCTTCTGAATTCTGTTCTTTGTAACTTTTGACTTCTTAATTAAGGGGCATGACACTCAACTAAACTACCCTAGGATGGCTTTGTGGTCATACATGGTGGTGCCTACTAAGAATTTATAATCTTACGAGTTTCTTTCAAAACCAAACGTAAATTAGTTAAGCGGTTGTTTTGGAG

Coding sequence (CDS)

ATGGCACCTAAAGCTGACAACACCAAAAAGGCTGATCCTAAAGCGCAAGCCCTCAAGACTGCTAAGGCAGTCAAGTCTGGGCCAACTTTCAAGAAGGCTAAGAAGATCAGAACATCGGTCACGTTCCATCGCCCAAAGACATTGAAGAAGGATAGGAATCCCAAGTATCCTCGGATCAGTGCGACTCCTAGGAACAAGTTGGATCAATACCAAATTCTTAAATATCCATTGACCACTGAGTCTGCAATGAAGAAGATTGAGGATAATAACACCCTTGTTTTTATTGTCGATATTCGTGCCGACAAGAAAAAGATTAAAGATGCTGTGAAGAAGATGTATGACATTCAGACCAAGAAAGTGAACACTTTAATCAGGCCTGATGGAACAAAAAAGGCATATGTTAGGTTAACCCCAGACTATGATGCTTTAGACGTGGCAAACAAAATTGGAATTATCTAA

Protein sequence

MAPKADNTKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Homology
[Close]
BLAST of Tan0017202 vs. ExPASy Swiss-Prot
Match: Q9AT35 (60S ribosomal protein L23a OS=Daucus carota OX=4039 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 1.3e-68
Identity = 142/154 (92.21%), Postives = 146/154 (94.81%), Query Frame = 0 

Query: 1   MAP-KADNTKKADPKAQALKTAKAVKSGPT-FKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D TKK+D KAQALKTAKAVKSG T FKK KKIRTSVTFHRP+TL KDRNPKYPR
Sbjct: 1   MSPAKVDVTKKSDAKAQALKTAKAVKSGTTKFKKVKKIRTSVTFHRPRTLTKDRNPKYPR 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of Tan0017202 vs. ExPASy Swiss-Prot
Match: Q07761 (60S ribosomal protein L23a OS=Nicotiana tabacum OX=4097 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 4.6e-66
Identity = 138/154 (89.61%), Postives = 143/154 (92.86%), Query Frame = 0 

Query: 1   MAP-KADNTKKADPKAQALKTAKAVKSGPTF-KKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           MAP KAD +KK+DPKAQA K AKAVKSG T  KK++KIRT VTFHRPKTLKKDRNPKYPR
Sbjct: 1   MAPAKADPSKKSDPKAQAAKVAKAVKSGSTLKKKSQKIRTKVTFHRPKTLKKDRNPKYPR 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISA  RNKLDQY ILKYPLTTESAMKKIEDNNTLVFIVDI+ADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISAPGRNKLDQYGILKYPLTTESAMKKIEDNNTLVFIVDIKADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of Tan0017202 vs. ExPASy Swiss-Prot
Match: O22644 (60S ribosomal protein L23A OS=Fritillaria agrestis OX=64177 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 6.0e-66
Identity = 138/154 (89.61%), Postives = 140/154 (90.91%), Query Frame = 0 

Query: 1   MAPKADNTKKADPKAQALKTAKAVKSGPTF--KKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           MAP A   KK D KAQALK AKAVKSG +   KKAKKIRTSVTFHRPKTLKKDRNPKYPR
Sbjct: 1   MAPPAKVAKKPDGKAQALKVAKAVKSGVSTLQKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISA PRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTK
Sbjct: 61  ISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           KVNTLIRPDGTKKAYVRLTPDYDALD+ANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDIANKIGII 154

[Close]
BLAST of Tan0017202 vs. ExPASy Swiss-Prot
Match: Q8LD46 (60S ribosomal protein L23a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL23AA PE=2 SV=2)

HSP 1 Score: 250.0 bits (637), Expect = 1.7e-65
Identity = 137/154 (88.96%), Postives = 140/154 (90.91%), Query Frame = 0 

Query: 1   MAP-KADNTKKADPKAQALKTAKAVKSGPTFKKA-KKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D TKKADPKA+ALK AKAVKSG  FKK  KKIRT VTFHRPKTL K R  KYP+
Sbjct: 1   MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of Tan0017202 vs. ExPASy Swiss-Prot
Match: Q9M3C3 (60S ribosomal protein L23a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL23AB PE=2 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 5.1e-65
Identity = 137/154 (88.96%), Postives = 140/154 (90.91%), Query Frame = 0 

Query: 1   MAP-KADNTKKADPKAQALKTAKAVKSGPTFKK-AKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D TKKADPKA+ALK AKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of Tan0017202 vs. NCBI nr
Match: XP_022991052.1 (60S ribosomal protein L23a [Cucurbita maxima])

HSP 1 Score: 288.5 bits (737), Expect = 3.4e-74
Identity = 150/152 (98.68%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MAPKADNTKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 60
           MAPKADNTKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRP+TLKKDRNPKYPRIS
Sbjct: 1   MAPKADNTKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPRTLKKDRNPKYPRIS 60

Query: 61  ATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV 120
           ATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV
Sbjct: 61  ATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV 120

Query: 121 NTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           NTLIRPDGTKKAYVRLTPDYDALDVANKIGI+
Sbjct: 121 NTLIRPDGTKKAYVRLTPDYDALDVANKIGIV 152

[Close]
BLAST of Tan0017202 vs. NCBI nr
Match: XP_023541685.1 (60S ribosomal protein L23a-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 286.6 bits (732), Expect = 1.3e-73
Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 0 

Query: 1   MAPKADNTKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 60
           MAPKADNTKK DPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS
Sbjct: 1   MAPKADNTKKTDPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 60

Query: 61  ATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV 120
           ATPR+KLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV
Sbjct: 61  ATPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV 120

Query: 121 NTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           NTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 NTLIRPDGTKKAYVRLTPDYDALDVANKIGII 152

[Close]
BLAST of Tan0017202 vs. NCBI nr
Match: KAG6599854.1 (60S ribosomal protein L23a, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 286.6 bits (732), Expect = 1.3e-73
Identity = 150/152 (98.68%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MAPKADNTKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 60
           MAPKA+NTKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS
Sbjct: 1   MAPKAENTKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 60

Query: 61  ATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV 120
           ATPR+KLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV
Sbjct: 61  ATPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV 120

Query: 121 NTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           NTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 NTLIRPDGTKKAYVRLTPDYDALDVANKIGII 152

[Close]
BLAST of Tan0017202 vs. NCBI nr
Match: XP_004140408.1 (60S ribosomal protein L23a isoform X1 [Cucumis sativus])

HSP 1 Score: 285.4 bits (729), Expect = 2.8e-73
Identity = 150/152 (98.68%), Postives = 150/152 (98.68%), Query Frame = 0 

Query: 1   MAPKADNTKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 60
           MAPKAD TKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS
Sbjct: 1   MAPKADMTKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 60

Query: 61  ATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV 120
            TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV
Sbjct: 61  VTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV 120

Query: 121 NTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           NTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 NTLIRPDGTKKAYVRLTPDYDALDVANKIGII 152

[Close]
BLAST of Tan0017202 vs. NCBI nr
Match: XP_022154290.1 (60S ribosomal protein L23a [Momordica charantia] >XP_022154291.1 60S ribosomal protein L23a [Momordica charantia])

HSP 1 Score: 285.4 bits (729), Expect = 2.8e-73
Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 0 

Query: 1   MAPKADNTKKADPKAQALKTAKAVKSGPTF-KKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADNTKKADPKAQALKTAKAVKSGPTF KKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADNTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of Tan0017202 vs. ExPASy TrEMBL
Match: A0A6J1JKM4 (50S ribosomal protein L23, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111487755 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.6e-74
Identity = 150/152 (98.68%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MAPKADNTKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 60
           MAPKADNTKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRP+TLKKDRNPKYPRIS
Sbjct: 1   MAPKADNTKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPRTLKKDRNPKYPRIS 60

Query: 61  ATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV 120
           ATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV
Sbjct: 61  ATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV 120

Query: 121 NTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           NTLIRPDGTKKAYVRLTPDYDALDVANKIGI+
Sbjct: 121 NTLIRPDGTKKAYVRLTPDYDALDVANKIGIV 152

[Close]
BLAST of Tan0017202 vs. ExPASy TrEMBL
Match: A0A6J1DJ76 (50S ribosomal protein L23, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111021582 PE=3 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.4e-73
Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 0 

Query: 1   MAPKADNTKKADPKAQALKTAKAVKSGPTF-KKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADNTKKADPKAQALKTAKAVKSGPTF KKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADNTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of Tan0017202 vs. ExPASy TrEMBL
Match: A0A0A0KQU4 (50S ribosomal protein L23, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_5G264270 PE=3 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.4e-73
Identity = 150/152 (98.68%), Postives = 150/152 (98.68%), Query Frame = 0 

Query: 1   MAPKADNTKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 60
           MAPKAD TKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS
Sbjct: 1   MAPKADMTKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 60

Query: 61  ATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV 120
            TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV
Sbjct: 61  VTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV 120

Query: 121 NTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           NTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 NTLIRPDGTKKAYVRLTPDYDALDVANKIGII 152

[Close]
BLAST of Tan0017202 vs. ExPASy TrEMBL
Match: A0A6J1JN21 (50S ribosomal protein L23, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111487327 PE=3 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.3e-73
Identity = 149/152 (98.03%), Postives = 151/152 (99.34%), Query Frame = 0 

Query: 1   MAPKADNTKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 60
           MAPKAD++KKADPKAQALK AKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS
Sbjct: 1   MAPKADSSKKADPKAQALKAAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 60

Query: 61  ATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV 120
           ATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV
Sbjct: 61  ATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV 120

Query: 121 NTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           NTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 NTLIRPDGTKKAYVRLTPDYDALDVANKIGII 152

[Close]
BLAST of Tan0017202 vs. ExPASy TrEMBL
Match: A0A6J1E3W3 (50S ribosomal protein L23, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111430563 PE=3 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.3e-73
Identity = 149/152 (98.03%), Postives = 151/152 (99.34%), Query Frame = 0 

Query: 1   MAPKADNTKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 60
           MAPKAD++KKADPKAQALK AKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS
Sbjct: 1   MAPKADSSKKADPKAQALKAAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 60

Query: 61  ATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV 120
           ATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV
Sbjct: 61  ATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV 120

Query: 121 NTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           NTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 NTLIRPDGTKKAYVRLTPDYDALDVANKIGII 152

[Close]
BLAST of Tan0017202 vs. TAIR 10
Match: AT2G39460.1 (ribosomal protein L23AA )

HSP 1 Score: 250.0 bits (637), Expect = 1.2e-66
Identity = 137/154 (88.96%), Postives = 140/154 (90.91%), Query Frame = 0 

Query: 1   MAP-KADNTKKADPKAQALKTAKAVKSGPTFKKA-KKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D TKKADPKA+ALK AKAVKSG  FKK  KKIRT VTFHRPKTL K R  KYP+
Sbjct: 1   MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of Tan0017202 vs. TAIR 10
Match: AT2G39460.2 (ribosomal protein L23AA )

HSP 1 Score: 250.0 bits (637), Expect = 1.2e-66
Identity = 137/154 (88.96%), Postives = 140/154 (90.91%), Query Frame = 0 

Query: 1   MAP-KADNTKKADPKAQALKTAKAVKSGPTFKKA-KKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D TKKADPKA+ALK AKAVKSG  FKK  KKIRT VTFHRPKTL K R  KYP+
Sbjct: 1   MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of Tan0017202 vs. TAIR 10
Match: AT3G55280.1 (ribosomal protein L23AB )

HSP 1 Score: 248.4 bits (633), Expect = 3.6e-66
Identity = 137/154 (88.96%), Postives = 140/154 (90.91%), Query Frame = 0 

Query: 1   MAP-KADNTKKADPKAQALKTAKAVKSGPTFKK-AKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D TKKADPKA+ALK AKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of Tan0017202 vs. TAIR 10
Match: AT3G55280.2 (ribosomal protein L23AB )

HSP 1 Score: 248.4 bits (633), Expect = 3.6e-66
Identity = 137/154 (88.96%), Postives = 140/154 (90.91%), Query Frame = 0 

Query: 1   MAP-KADNTKKADPKAQALKTAKAVKSGPTFKK-AKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D TKKADPKA+ALK AKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of Tan0017202 vs. TAIR 10
Match: AT3G55280.3 (ribosomal protein L23AB )

HSP 1 Score: 241.1 bits (614), Expect = 5.7e-64
Identity = 133/153 (86.93%), Postives = 136/153 (88.89%), Query Frame = 0 

Query: 1   MAP-KADNTKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           M+P K D TKKADPKA+ALK AKAVKSG       KIRT VTFHRPKTL   R PKYP+I
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQI-----KIRTKVTFHRPKTLTVPRKPKYPKI 60

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           SATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 148

The following BLAST results are available for this feature:
BLAST of Tan0017202 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9AT351.3e-6892.2160S ribosomal protein L23a OS=Daucus carota OX=4039 GN=RPL23A PE=2 SV=1[more]
Q077614.6e-6689.6160S ribosomal protein L23a OS=Nicotiana tabacum OX=4097 GN=RPL23A PE=2 SV=1[more]
O226446.0e-6689.6160S ribosomal protein L23A OS=Fritillaria agrestis OX=64177 GN=RPL23A PE=2 SV=1[more]
Q8LD461.7e-6588.9660S ribosomal protein L23a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL23AA PE=2 SV=... [more]
Q9M3C35.1e-6588.9660S ribosomal protein L23a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL23AB PE=2 SV=... [more]
BLAST of Tan0017202 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022991052.13.4e-7498.6860S ribosomal protein L23a [Cucurbita maxima][more]
XP_023541685.11.3e-7398.6860S ribosomal protein L23a-like [Cucurbita pepo subsp. pepo][more]
KAG6599854.11.3e-7398.6860S ribosomal protein L23a, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_004140408.12.8e-7398.6860S ribosomal protein L23a isoform X1 [Cucumis sativus][more]
XP_022154290.12.8e-7399.3560S ribosomal protein L23a [Momordica charantia] >XP_022154291.1 60S ribosomal p... [more]
BLAST of Tan0017202 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JKM41.6e-7498.6850S ribosomal protein L23, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11148... [more]
A0A6J1DJ761.4e-7399.3550S ribosomal protein L23, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A0A0KQU41.4e-7398.6850S ribosomal protein L23, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_5G264... [more]
A0A6J1JN212.3e-7398.0350S ribosomal protein L23, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11148... [more]
A0A6J1E3W32.3e-7398.0350S ribosomal protein L23, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
BLAST of Tan0017202 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G39460.11.2e-6688.96ribosomal protein L23AA [more]
AT2G39460.21.2e-6688.96ribosomal protein L23AA [more]
AT3G55280.13.6e-6688.96ribosomal protein L23AB [more]
AT3G55280.23.6e-6688.96ribosomal protein L23AB [more]
AT3G55280.35.7e-6486.93ribosomal protein L23AB [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013025Ribosomal protein L25/L23PFAMPF00276Ribosomal_L23coord: 72..134
e-value: 1.6E-14
score: 54.0
IPR013025Ribosomal protein L25/L23PANTHERPTHR1162060S RIBOSOMAL PROTEIN L23Acoord: 1..152
IPR013025Ribosomal protein L25/L23HAMAPMF_01369_ARibosomal_L23_Acoord: 72..152
score: 22.356056
IPR005633Ribosomal protein L23/L25, N-terminalPFAMPF03939Ribosomal_L23eNcoord: 14..61
e-value: 2.7E-18
score: 65.9
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 33..152
e-value: 3.7E-53
score: 180.7
IPR019985Ribosomal protein L23TIGRFAMTIGR03636TIGR03636coord: 76..152
e-value: 4.9E-29
score: 98.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..43
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..61
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..16
NoneNo IPR availablePANTHERPTHR11620:SF81RIBOSOMAL PROTEIN L23A, PUTATIVE-RELATEDcoord: 1..152
IPR001014Ribosomal protein L23/L25, conserved sitePROSITEPS00050RIBOSOMAL_L23coord: 130..145
IPR012678Ribosomal protein L23/L15e core domain superfamilySUPERFAMILY54189Ribosomal proteins S24e, L23 and L15ecoord: 70..145

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0017202.1Tan0017202.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000027 ribosomal large subunit assembly
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003729 mRNA binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome