Tan0017018 (gene) Snake gourd v1

Overview


Name	Tan0017018
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	MuDRA-like transposase
Location	LG08: 58354669 .. 58356500 (+)
RNA-Seq Expression	Tan0017018
Synteny	Tan0017018

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAACTCCGCTTGCTTCTCCATCGTCTATTACATCAAACAAACAATCACTCTCATGGGATGTGAACGACCTCACATCACTCGAATGGGATGTGGACTACCTCGCCCCAAGCCCGATTGCAATACCGAGCGCAAGCCCTTTGACAATCGAATCACCACCACCCCCGTCGGAGGAGAACTCATCTGACTGTGTCTTATTGGAGAATGTGGTCTCCAACCCAGATATCATAGTCGTCTCAGCAGATACAGACGACCCTTCGGAAGACGAACCTTCAGAAGTGAAGTCGGAAGCTGCCCCATCCGATGTAATAGATATATCGTTGGAGTTGGAGTCCGATTAGGTTGTAGTCGTGTCACGTTGGGTTGTATCAAATCATTATAATATGTAAAAGTTTTTAATTAATATAAATTTATGTGTTTCACTGTATCTTTTCCTATTCGTTTTGATTTCATATATTTGATGCTCGACTGACTGCACGATACCAACTGAACATGCATGGGTGTACTGTAAGACTAAATGACCATAGCCAAATATATGTGTGACTAACCAAAATGACTATAACCAACTAAACATGTTAAGTACTAAACATGCATGAACGTACATATGATTATAAGACTAACCTAAACCAAATATATGGACGAATAACCAAATATATGCAAAAACCTTATTCATAGTGTCACTCGATGATGATGATAAATATTAATTTTATATATCGTGTTCGTAGATAAATGAGATCACGATCGCGTTTGTTATGATGTTAACGCGAGCGCAAGTGTTTGCTAGGGTTTGGGATTGACTGAATGCACATCATTCCAAAGTGAATTAATTGGATCACACTCGCGTTATTCCAGTTAACGTGAGCACGAGCGCGAGAGTTTGGGATTGTTTGTGAGTTCCCATGCAGTTGGATATCAAAGGATAAGTATTAATTATCGGTTTGACTCGTATCATTATTGACACGACCAAATTAGGCTTTCATTTTTTAAATTGTGATCGTTTTAAGAGATTTTGTCTGTCAAACTTATCAAGATAATAAAATCACGTCCATCAACTTTAATATGGTAGTTCAACTAACTAACTAACACAGTTCCACAATAACGATATAGTCTTGTGGATGTCAATTTGTTGTTTGAAGTTAGAGTTTGTTAACGCAACCTTGTTCTTCAACAAACACGCATACTTGTTACATACAGTTGACCATCCCTTACTCTTGTTAAATACACACTGCATATCATGAATACGGTAAATCATTACTAACATATTATAAGAATGACAATGTAGATTAATGTAATTAACTTTCTGTTGCAGAAATCAATTTTCATTCGTTACGAAGGTTCGTGGAATGTCGAAGGGAGACATTACGAAGGTGGTAGAATGAAAGGAATTATGGTGTCGAGCTCCATAACGTTCCACCAAGTGAAAGAACGATTGTACAACATCGTTAAAGTCAGTCTATCCACGTTCGATCTTATACTTAGGGTACAATATAGTTTGATGGGAGGATTACCTCCCATTTACATCGAGGATGACGATGAACTTCAATTCCTTCTACAACAACTCAAGCTATCGCAATTACCAATTTGCGTGCAAACAGTACCATCTCAAGGCAGACATGTGGACGTTGTAGTTGGTAATGAAACATTGTCAATGCGTGATGAACTGATACCAACAACCGACATCCCACCTGTTGTGTCCTTAGAAAATGATGACAATGATCCATGGGGCACGTCTGGACAACAATGGGGCGATCAGACAGATTGGGATTCGAACGATGCTTTCCATGAATACCAAACGGATGGAACATCAACTGTACATACACAACCATCATAA

mRNA sequence

ATGTCAACTCCGCTTGCTTCTCCATCGTCTATTACATCAAACAAACAATCACTCTCATGGGATGTGAACGACCTCACATCACTCGAATGGGATGTGGACTACCTCGCCCCAAGCCCGATTGCAATACCGAGCGCAAGCCCTTTGACAATCGAATCACCACCACCCCCGTCGGAGGAGAACTCATCTGACTGTGTCTTATTGGAGAATGTGGTCTCCAACCCAGATATCATAGTCGTCTCAGCAGATACAGACGACCCTTCGGAAGACGAACCTTCAGAAGTGAAGTCGGAAGCTGCCCCATCCGATAAATCAATTTTCATTCGTTACGAAGGTTCGTGGAATGTCGAAGGGAGACATTACGAAGGTGGTAGAATGAAAGGAATTATGGTGTCGAGCTCCATAACGTTCCACCAAGTGAAAGAACGATTGTACAACATCGTTAAAGTCAGTCTATCCACGTTCGATCTTATACTTAGGGTACAATATAGTTTGATGGGAGGATTACCTCCCATTTACATCGAGGATGACGATGAACTTCAATTCCTTCTACAACAACTCAAGCTATCGCAATTACCAATTTGCGTGCAAACAGTACCATCTCAAGGCAGACATGTGGACGTTGTAGTTGGTAATGAAACATTGTCAATGCGTGATGAACTGATACCAACAACCGACATCCCACCTGTTGTGTCCTTAGAAAATGATGACAATGATCCATGGGGCACGTCTGGACAACAATGGGGCGATCAGACAGATTGGGATTCGAACGATGCTTTCCATGAATACCAAACGGATGGAACATCAACTGTACATACACAACCATCATAA

Coding sequence (CDS)

ATGTCAACTCCGCTTGCTTCTCCATCGTCTATTACATCAAACAAACAATCACTCTCATGGGATGTGAACGACCTCACATCACTCGAATGGGATGTGGACTACCTCGCCCCAAGCCCGATTGCAATACCGAGCGCAAGCCCTTTGACAATCGAATCACCACCACCCCCGTCGGAGGAGAACTCATCTGACTGTGTCTTATTGGAGAATGTGGTCTCCAACCCAGATATCATAGTCGTCTCAGCAGATACAGACGACCCTTCGGAAGACGAACCTTCAGAAGTGAAGTCGGAAGCTGCCCCATCCGATAAATCAATTTTCATTCGTTACGAAGGTTCGTGGAATGTCGAAGGGAGACATTACGAAGGTGGTAGAATGAAAGGAATTATGGTGTCGAGCTCCATAACGTTCCACCAAGTGAAAGAACGATTGTACAACATCGTTAAAGTCAGTCTATCCACGTTCGATCTTATACTTAGGGTACAATATAGTTTGATGGGAGGATTACCTCCCATTTACATCGAGGATGACGATGAACTTCAATTCCTTCTACAACAACTCAAGCTATCGCAATTACCAATTTGCGTGCAAACAGTACCATCTCAAGGCAGACATGTGGACGTTGTAGTTGGTAATGAAACATTGTCAATGCGTGATGAACTGATACCAACAACCGACATCCCACCTGTTGTGTCCTTAGAAAATGATGACAATGATCCATGGGGCACGTCTGGACAACAATGGGGCGATCAGACAGATTGGGATTCGAACGATGCTTTCCATGAATACCAAACGGATGGAACATCAACTGTACATACACAACCATCATAA

Protein sequence

MSTPLASPSSITSNKQSLSWDVNDLTSLEWDVDYLAPSPIAIPSASPLTIESPPPPSEENSSDCVLLENVVSNPDIIVVSADTDDPSEDEPSEVKSEAAPSDKSIFIRYEGSWNVEGRHYEGGRMKGIMVSSSITFHQVKERLYNIVKVSLSTFDLILRVQYSLMGGLPPIYIEDDDELQFLLQQLKLSQLPICVQTVPSQGRHVDVVVGNETLSMRDELIPTTDIPPVVSLENDDNDPWGTSGQQWGDQTDWDSNDAFHEYQTDGTSTVHTQPS

Homology

[Close]

BLAST of Tan0017018 vs. NCBI nr
Match: XP_022154925.1 (uncharacterized protein LOC111022071 [Momordica charantia])

HSP 1 Score: 94.7 bits (234), Expect = 1.3e-15
Identity = 40/99 (40.40%), Postives = 69/99 (69.70%), Query Frame = 0


Query: 103 KSIFIRYEGSWNVEGRHYEGGRMKGIMVSSSITFHQVKERLYNIVKVSLSTFDLILRVQY 162
           KS+FIR+ G+W      Y GG +KGI+V  ++T+ ++K RL+ ++KV  + +DL++RV Y
Sbjct: 5   KSLFIRFGGTWEDNTNSYVGGELKGIIVPLTVTYKELKNRLFRLMKVDQNGYDLVIRVPY 64

Query: 163 SLMGGLPPIYIEDDDELQFLLQQLKLSQLPICVQTVPSQ 202
            L    PP+++ DDD+L+F L Q ++S++P+ V T+P +
Sbjct: 65  HLACDSPPMFVTDDDDLRFALVQEQVSKVPLFVSTIPRE 103

[Close]

BLAST of Tan0017018 vs. NCBI nr
Match: XP_038891938.1 (uncharacterized protein LOC120081277 isoform X1 [Benincasa hispida])

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-08
Identity = 46/153 (30.07%), Postives = 76/153 (49.67%), Query Frame = 0


Query: 102 DKSIFIR--YEGSWNVEGRHYEGGRMKGIMVSSSITFHQVKERLYNIVKVSLSTFDLILR 161
           DK ++    Y G W+        G++ GI+V  S+ + ++K  +Y +  VS S FDLIL+
Sbjct: 67  DKKVYTYSIYGGDWDENESSCIRGQLAGILVPVSLKYEEIKSHIYGVTNVSSSEFDLILK 126

Query: 162 VQYSLMGGLPPIYIEDDDELQFLLQQLKLSQLPICVQTVPSQGRHVDVVVGN-------- 221
           V+Y L    PP YI +DD ++FLL +  LS+L + V    +   ++ +   N        
Sbjct: 127 VKYKLEYEAPPQYIRNDDGIRFLLFREDLSRLQLSVTLKSNVDENIRMGFRNVSYDDTTM 186

Query: 222 -----ETLSMRDE----LIPTTDIPPVVSLEND 236
                E+   R E     + T  +P ++SL+ND
Sbjct: 187 ERQYKESYQYRQEEYDIPLSTNTVPSILSLDND 219

[Close]

BLAST of Tan0017018 vs. NCBI nr
Match: XP_038893574.1 (uncharacterized protein LOC120082123 [Benincasa hispida])

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-08
Identity = 52/176 (29.55%), Postives = 84/176 (47.73%), Query Frame = 0


Query: 105 IFIRYEGSWNVEGRHYEGGRMKGIMVSSSITFHQVKERLYNIVKVSLSTFDLILRVQYSL 164
           IF+R+ G W+  GR+Y GG MKG+ + + IT  ++   ++  + +    FD+ ++  Y L
Sbjct: 6   IFVRFGGDWDESGRNYVGGHMKGLKIRNDITVSELVSMMHQRLNIGSDMFDIYIKCCYKL 65

Query: 165 MGGLPPIYIEDDDELQFLLQQLKLSQLPICVQTVP--SQGRH-----VDVVVGNETLSMR 224
           +    PI I DD++L F L+  + SQ+P+ V   P  S G H      D      T+S  
Sbjct: 66  LVPASPIDIVDDEDLSFFLEGSEASQMPLFVSVTPVNSHGVHQHCNPTDQPNPIHTMSSI 125

Query: 225 DELIPTTDIPPVVSLENDDNDPWGTSGQQWGDQTDWDSN-DAFHEY-QTDGTSTVH 272
           D+ I         +L +D N+ W      W ++    S  +  H Y QT  T  +H
Sbjct: 126 DDHIEP------CNLGDDRNEAW----FGWNNEPRCTSQFNTKHGYGQTSSTPNIH 171

[Close]

BLAST of Tan0017018 vs. NCBI nr
Match: KAA0067872.1 (MuDRA-like transposase [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 3.4e-08
Identity = 33/106 (31.13%), Postives = 61/106 (57.55%), Query Frame = 0


Query: 105 IFIRYEGSWNVEGRHYEGGRMKGIMVSSSITFHQVKERLYNIVKVSLSTFDLILRVQYSL 164
           I +RY G+W+   R Y GG +KGI+V+  IT   +++ LY++ +V  + FD+ +R  Y +
Sbjct: 6   ILVRYGGAWDERRRKYGGGVLKGIVVNKEITHKDLQDELYDLAEVDPTKFDIKIRCIYEI 65

Query: 165 MG--GLPPIYIEDDDELQFLLQQLKLSQLPICVQTVPSQGRHVDVV 209
            G    PP  + +D +L+F +     S++P+C+   P+  +   V+
Sbjct: 66  KGKKEAPPFELSNDYDLKFYILSENPSEVPLCLSFEPTNNQSKKVL 111

[Close]

BLAST of Tan0017018 vs. NCBI nr
Match: XP_038891939.1 (uncharacterized protein LOC120081277 isoform X2 [Benincasa hispida])

HSP 1 Score: 68.6 bits (166), Expect = 9.9e-08
Identity = 53/180 (29.44%), Postives = 85/180 (47.22%), Query Frame = 0


Query: 79  VSADTDDPSEDEPSEVKSEA----APSDKSIFIR--YEGSWNVEGRHYEGGRMKGIMVSS 138
           VS + D  + D   E  SE        DK ++    Y G W+        G++ GI+V  
Sbjct: 9   VSFNGDFSNGDFQDEAFSERNRFFRKDDKKVYTYSIYGGDWDENESSCIRGQLAGILVPV 68

Query: 139 SITFHQVKERLYNIVKVSLSTFDLILRVQYSLMGGLPPIYIEDDDELQFLLQQLKLSQLP 198
           S+ + ++K  +Y +  VS S FDLIL+V+Y L    PP YI +DD ++FLL +  LS+L 
Sbjct: 69  SLKYEEIKSHIYGVTNVSSSEFDLILKVKYKLEYEAPPQYIRNDDGIRFLLFREDLSRLQ 128

Query: 199 ICVQTVPSQGRHVDVVVGN-------------ETLSMRDE----LIPTTDIPPVVSLEND 236
           + V    +   ++ +   N             E+   R E     + T  +P ++SL+ND
Sbjct: 129 LSVTLKSNVDENIRMGFRNVSYDDTTMERQYKESYQYRQEEYDIPLSTNTVPSILSLDND 188

[Close]

BLAST of Tan0017018 vs. ExPASy TrEMBL
Match: A0A6J1DL08 (uncharacterized protein LOC111022071 OS=Momordica charantia OX=3673 GN=LOC111022071 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.2e-16
Identity = 40/99 (40.40%), Postives = 69/99 (69.70%), Query Frame = 0


Query: 103 KSIFIRYEGSWNVEGRHYEGGRMKGIMVSSSITFHQVKERLYNIVKVSLSTFDLILRVQY 162
           KS+FIR+ G+W      Y GG +KGI+V  ++T+ ++K RL+ ++KV  + +DL++RV Y
Sbjct: 5   KSLFIRFGGTWEDNTNSYVGGELKGIIVPLTVTYKELKNRLFRLMKVDQNGYDLVIRVPY 64

Query: 163 SLMGGLPPIYIEDDDELQFLLQQLKLSQLPICVQTVPSQ 202
            L    PP+++ DDD+L+F L Q ++S++P+ V T+P +
Sbjct: 65  HLACDSPPMFVTDDDDLRFALVQEQVSKVPLFVSTIPRE 103

[Close]

BLAST of Tan0017018 vs. ExPASy TrEMBL
Match: A0A5A7VHQ3 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G00220 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.6e-08
Identity = 33/106 (31.13%), Postives = 61/106 (57.55%), Query Frame = 0


Query: 105 IFIRYEGSWNVEGRHYEGGRMKGIMVSSSITFHQVKERLYNIVKVSLSTFDLILRVQYSL 164
           I +RY G+W+   R Y GG +KGI+V+  IT   +++ LY++ +V  + FD+ +R  Y +
Sbjct: 6   ILVRYGGAWDERRRKYGGGVLKGIVVNKEITHKDLQDELYDLAEVDPTKFDIKIRCIYEI 65

Query: 165 MG--GLPPIYIEDDDELQFLLQQLKLSQLPICVQTVPSQGRHVDVV 209
            G    PP  + +D +L+F +     S++P+C+   P+  +   V+
Sbjct: 66  KGKKEAPPFELSNDYDLKFYILSENPSEVPLCLSFEPTNNQSKKVL 111

[Close]

BLAST of Tan0017018 vs. ExPASy TrEMBL
Match: A0A5A7TQS3 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1770G00270 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 4.8e-08
Identity = 39/137 (28.47%), Postives = 74/137 (54.01%), Query Frame = 0


Query: 105 IFIRYEGSWNVEGRHYEGGRMKGIMVSSSITFHQVKERLYNIVKVSLSTFDLILRVQYSL 164
           I +R+ G+W+ E R YEGG +KGI+V   IT   ++  LY++ +V  + FD+ +R  Y +
Sbjct: 6   ILVRHGGAWDEERRKYEGGVLKGIVVPKEITHKDLQSELYDLAEVDPTKFDIKIRCIYEI 65

Query: 165 MG--GLPPIYIEDDDELQFLLQQLKLSQLPICVQTVPSQGRHVDVVVGN-ETLSMRDELI 224
            G    PP  + +D +L+F +      ++P+ +   P+  R + V+  +  T+S  +++ 
Sbjct: 66  KGEKEAPPFELSNDRDLKFYILSENPLEVPLYLSFEPTSNRSMKVLNKDYNTVSGSNQVQ 125

Query: 225 PTTDIPPVVSLENDDND 239
                PP+     D+N+
Sbjct: 126 NLNPHPPIGMDTLDENE 142

[Close]

BLAST of Tan0017018 vs. ExPASy TrEMBL
Match: A0A5A7T2N3 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00450 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.1e-07
Identity = 43/167 (25.75%), Postives = 83/167 (49.70%), Query Frame = 0


Query: 105 IFIRYEGSWNVEGRHYEGGRMKGIMVSSSITFHQVKERLYNIVKVSLSTFDLILRVQYSL 164
           I +R+ G W+   R YEGG +KGI+V   IT   ++  LY++ +V  + FD+ +R  Y +
Sbjct: 6   ILVRHGGEWDEGQRKYEGGVLKGIVVPKEITHKDLQSELYDLAEVDPTKFDIKIRCIYEI 65

Query: 165 MG--GLPPIYIEDDDELQFLLQQLKLSQLPICVQTVPSQGRHVDVVVGN-ETLSMRDELI 224
            G    PP  + +D +L+F +    L ++P+ +   PS  R + V+  +  ++S  +++ 
Sbjct: 66  KGEKEAPPFELSNDRDLKFYILSENLLEVPLYLSFEPSSNRSMKVLNKDYNSVSGSNQVQ 125

Query: 225 PTTDIPPVVSLENDDNDPWGTSGQQWG--------DQTDWDSNDAFH 261
                PP + ++  D +       Q G        +   W+S +++H
Sbjct: 126 NLNPHPPPIGMDTLDENEVDIGEVQVGLCDNMIGTNSAIWESYESYH 172

[Close]

BLAST of Tan0017018 vs. ExPASy TrEMBL
Match: A0A5A7UT04 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G001610 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.4e-07
Identity = 34/97 (35.05%), Postives = 56/97 (57.73%), Query Frame = 0


Query: 101 SDKSIFIRYEGSWNVEGRHYEGGRMKGIMVSSSITFHQVKERLYNIVKVSLSTFDLILRV 160
           S+  I +RY G+W+   R YEGG +KGI+VS  IT   +++ LYN+ KV  + FD+ +R 
Sbjct: 2   SNVRILVRYGGAWDEGRRKYEGGVLKGIVVSKEITHKDLQDELYNLTKVDPTKFDIKIRC 61

Query: 161 QYSLM--GGLPPIYIEDDDELQFLLQQLKLSQLPICV 196
            Y +      PP  + +D +L+F +      ++P+ V
Sbjct: 62  IYEIKVENEAPPFELSNDRDLKFYILSENPLEVPLYV 98

The following BLAST results are available for this feature:

BLAST of Tan0017018 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0017018 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154925.1	1.3e-15	40.40	uncharacterized protein LOC111022071 [Momordica charantia]	[more]
XP_038891938.1	1.2e-08	30.07	uncharacterized protein LOC120081277 isoform X1 [Benincasa hispida]	[more]
XP_038893574.1	1.2e-08	29.55	uncharacterized protein LOC120082123 [Benincasa hispida]	[more]
KAA0067872.1	3.4e-08	31.13	MuDRA-like transposase [Cucumis melo var. makuwa]	[more]
XP_038891939.1	9.9e-08	29.44	uncharacterized protein LOC120081277 isoform X2 [Benincasa hispida]	[more]

BLAST of Tan0017018 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DL08	6.2e-16	40.40	uncharacterized protein LOC111022071 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A5A7VHQ3	1.6e-08	31.13	MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1...	[more]
A0A5A7TQS3	4.8e-08	28.47	MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1...	[more]
A0A5A7T2N3	1.1e-07	25.75	MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold5...	[more]
A0A5A7UT04	1.4e-07	35.05	MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2...	[more]

BLAST of Tan0017018 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..63
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 225..275
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 260..275
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 236..253
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0017018.1	Tan0017018.1	mRNA