Tan0016976 (gene) Snake gourd v1

Overview
NameTan0016976
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
Description60S ribosomal protein L18
LocationLG02: 86458057 .. 86461566 (+)
RNA-Seq ExpressionTan0016976
SyntenyTan0016976
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGCTGTGAGGACTCAAACCATACAGAGTCCTGTGAGGACTCAAATAATTACAGAGAGTCTGTGAGGACTCAAAATGAAATGACTCAGGATGACCAATTGACCACTTAAAGAAAAGGAAGTCACGGACTATAGTCATGATGATATGAGAAAGTTTTAGGTCCCGTGATATGTACATTTCGAAAGCAGTTTAAAAGTCATGATTGTATGTGTTTGCATATCCCAAACCTCGGTAGCGAGGTCACTTACATCGGGTATTGTTTTGCAATACTCACCCTTTCTTTTCAAAATGTTTTTGTGTAAGGCCAAGGACGTGCAGGGCGAGTGACGGAGGCGCGTTGTCAAAACCATGGGAAATGTCATGTTTTCCGCATATTTTCTTTAATAACTGATGTTGTCATTTTATGTTTTTTTGAAGTTAAGTTTAAATTTCCGGATTTTTAAGTAGGCCATGTTTAAACCGTTTCTTTTGCACGTTTTGAATGTTTTGTTTTGGGATCCCTAAAGATGATTTAATAGCAGTGGTGATTTAAAGATTGTTTTAAATCCTTTGGCCTAAGAATGCATGCATGAGTAGTAATGTCCCTAGGAGTTATAGTTAAGGAAAAGTAGGGGCGTTACAATCAACACGATCATGAGTGTAATGGGAATCAATCTCAAGACTAGGTTCGGGGTTTGTTAATTCGAACTCTTCAATATATAAAGGTTTTTGTGGTTTGATAACTTTTTGTGGTTTGTGTTATTACAATAAGTTGAATATTTATTTCATGATAAATTAATATGTTATGTTCCTAATTTTTTTGATAAGTTTAGTTGTTATGCTCATATATTGAGTTAGTAAAGTATATAGTTGTTATGTTCATAAAGTTAGAACACTTTAATTGCTCATGCCATTTTGATGTATTTTAATATATATGTTCCTAAATTTTGTTAAACTTAATTAGTTTAATTTAATTGTTATATCCATAAATTTTGATAAGTGAGTTAAATTTTGGTGTTAGTTTAATATTTGTGCTCATGATTCTATTATGTTCTTAAGTCTCATTAAGCTTAGTTTAGTTGTTATGTTGATGAATTTCTTATAAGTTACTTAAGTTTTATATTTATATTCAATAAAGCTTGATAACATTATATGTGTGTTAATTTGACGAGTTTAGTTCTTTATGTTCCTTTGAGTATATACTCTATGATAGTTGAATTGTAAGTAAATGTAGTTGTTATGTGTTATGTGTTATGTTTGTTCATTATTTATCCAATCTCCTCCTTTGGTTTTTGCAAAAGGGAGCCTTGTTGTGTCGTCAACTGCTATTCGACTCTTTAGTGAGTTAGAATTACGAGACGTTTGAGCTTTTGACATTTTGATTTTTTATATTTTAGTTTGTTAGAGTTGTTTTGAGGTTGACTTTAGTACCCTACTTAAATCATTTTTTATTCTTATGTTAATGTGCCATTTTTTTTTGTCTTAATAAGTAACTTTGTAGATGTTGTATTTTAATTTTGTCAATTTAGTTTAGTTTTTTAACTAAAACATCTGGGCTCATCAGATTTCTCTCATAGACTCTTTCTTGTTGAGATTGGGTTTGAAGAGTACATTAAATTTTCATATATATTGATGTTGATGCTCCCGCTTGAGAGCTATCTTTGAGTTCATTTTTGTGTTTTTTTAAGACACAACTTGAATGTCTATGTCTTTGCAGATTGGTTAGATCGACATGGTATAATACATTATACTATTAGATGTCTGAATATGCTTAACTTTTAAGTACCTTTTAAGTTTCTTTAAGAGTCAAAACAACACTTAAGCTCTTTTTAGCCACTTTTCGTTGACTTTGTTAGTTTCAATGGGTGAATACTACACTTTTATGTTGTTTTAAGTTATTTTAGTCCTCAAAGTTAGCTTAAGCGCCTTTAAGACACTTTTGTAGCATCAACGGTTTGTTTCTTTTGTAGCATTTAGTCATAGCATTAGATTAAAACACAATAGAAAATGTGAGGGCGCTTATGGTCATTCTAAAAACAAAAGGCGGTAAAACTCCTACTTCTAAAATTAGATGTTATACGCACGTTAGAAGAACCTTTGAAACACAAAGGTGAACAAGCCACCAATTTCACTTTCCAGACTTATCAAGTTCATGAAGGGAAAGGTGTGTGCTTCTATTTATGCATTACACATTCTTTAGTTTTTGATTTCAGCCTCGAAGGACAGTGTTTCTGTTTGCATTTTTCATTGTCTAAATTCTCTGGTTGTTAAACATGGTATAGGAAGACAAAATTGTCGTCATTGTTGGAACCGTGACCGATGACATTCGTGTTTATGATGTCCCGTCTTTGAAAGTAACAGCCTTGAGGTTTACTGAGACTGCAAGGGCAAGGATTGAGAAGGCTAGTGGTGAGTGTTTGACCTTCGACCAACTTGCCCTGAGAGCTCCTCTTGGCGAGAACACGGTACGACTACGAGTCCCATTTGCTTTCTTTTCTACACTTAATTGACTGGTACGTTTATTTTTGGCTCCTGAAAGTTTATGCATGCCTATTTTCAAGTTTGTGTATCAAAGGTTCTTTTAATTTTAAATAGTCTGTTTAGGATTTTGTGTTTCAAAGGTTCATCAGAAACACAGAGGTTAAGAAAAGATCCTTGTATATCTCGACCTTGCTTCCAAATTGCTATCTAAAAGCTTCATGATCCAGTCCATTTAAACTTATAACGAAGATGATGCTGCAACTCTGTCCTCAAGCTTGGTGTAATCCTGCGAGGGAAGAGCGGCTTCTTCGAAAACTTGCTCCAGAGTCTGGATTGTTATAAGGTAATTCATCACATATTGAGCAATTGGATGAATATATATAGTATTTGTGTTCCTGATAAGTTTGGGTTGTTATGTTCTTGAGTTTAGCTTTAAGCTTTTCCGTTGAAGTTGAAAAACGTTTGTGCTTTTTAGTAACCAGTTTATGTAAAGTTTGTTTGCTATGGGTTTCCTTTTAAACACAAGAAGAGGAAAACCTCTGTAATTTTATATTTCATAGGCATCCAATATATATAATTGTTGCTCTATTATTTGTGTATGCAATTTGAACTTCTGTTTTATTCTAAGTTAGTTGAATGTGTTCATTGAGTGAAATAAACTTGTTTTGCTTGCATGTAATTAACATTTGATAGAACTTCAACATTAATGTTTAACCCCAGCCCTTATGTATTTGAAGTTAGTGGGTGGTTGGGGAGAATGGTTTGTTTTTGAAGTGTTTCTGATGTTAAAACAGGTCATTGAAATTTTGGAAAAGTCCTAGTAGCATTGTTATGCTGCCAAAATTTCGGAGTGAACAACGTGTCTTAAGATACGCCCAAGTGAGGTTTACTCCCAGAATTTAGGGTCGTTACACTTTGCATGCTTCTTAGGATTAGCATGAAGGTTGTTTTCCTTCACTATTCGGGATGTGAAGGAGTGAGTGGAGTAGGAAGATGGGTAGCAAGTATTCGAGATCGTTGTGTTTTAAAACGGGTTGGCATGATTGA

mRNA sequence

ATGAAAAGTTTTAGGTCCCGTGATATGTACATTTCGAAAGCAGTGAACAAGCCACCAATTTCACTTTCCAGACTTATCAAGTTCATGAAGGGAAAGGAAGACAAAATTGTCGTCATTGTTGGAACCGTGACCGATGACATTCGTGTTTATGATGTCCCGTCTTTGAAAGTAACAGCCTTGAGGTTTACTGAGACTGCAAGGGCAAGGATTGAGAAGGCTAGTGGTGAGTGTTTGACCTTCGACCAACTTGCCCTGAGAGCTCCTCTTGGCGAGAACACGTGGAGTAGGAAGATGGGTAGCAAGTATTCGAGATCGTTGTGTTTTAAAACGGGTTGGCATGATTGA

Coding sequence (CDS)

ATGAAAAGTTTTAGGTCCCGTGATATGTACATTTCGAAAGCAGTGAACAAGCCACCAATTTCACTTTCCAGACTTATCAAGTTCATGAAGGGAAAGGAAGACAAAATTGTCGTCATTGTTGGAACCGTGACCGATGACATTCGTGTTTATGATGTCCCGTCTTTGAAAGTAACAGCCTTGAGGTTTACTGAGACTGCAAGGGCAAGGATTGAGAAGGCTAGTGGTGAGTGTTTGACCTTCGACCAACTTGCCCTGAGAGCTCCTCTTGGCGAGAACACGTGGAGTAGGAAGATGGGTAGCAAGTATTCGAGATCGTTGTGTTTTAAAACGGGTTGGCATGATTGA

Protein sequence

MKSFRSRDMYISKAVNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARARIEKASGECLTFDQLALRAPLGENTWSRKMGSKYSRSLCFKTGWHD
Homology
[Close]
BLAST of Tan0016976 vs. ExPASy Swiss-Prot
Match: P42791 (60S ribosomal protein L18-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18B PE=1 SV=2)

HSP 1 Score: 132.5 bits (332), Expect = 3.0e-30
Identity = 64/85 (75.29%), Postives = 79/85 (92.94%), Query Frame = 0 

Query: 9   MYISKAVNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARA 68
           +++SK VNK P+SLSRL++FM GKEDKI V+VGT+TDD+RV+++P++KVTALRFTE ARA
Sbjct: 52  LFMSK-VNKAPLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARA 111

Query: 69  RIEKASGECLTFDQLALRAPLGENT 94
           RIEKA GECLTFDQLALRAPLG+NT
Sbjct: 112 RIEKAGGECLTFDQLALRAPLGQNT 135

[Close]
BLAST of Tan0016976 vs. ExPASy Swiss-Prot
Match: Q940B0 (60S ribosomal protein L18-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18C PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 6.7e-30
Identity = 63/85 (74.12%), Postives = 79/85 (92.94%), Query Frame = 0 

Query: 9   MYISKAVNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARA 68
           +++SK VNK P+SLSRL++FM GK+DKI V+VGT+TDD+RV+++P++KVTALRFTE ARA
Sbjct: 52  LFMSK-VNKAPLSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARA 111

Query: 69  RIEKASGECLTFDQLALRAPLGENT 94
           RIEKA GECLTFDQLALRAPLG+NT
Sbjct: 112 RIEKAGGECLTFDQLALRAPLGQNT 135

[Close]
BLAST of Tan0016976 vs. ExPASy Swiss-Prot
Match: O65729 (60S ribosomal protein L18 (Fragment) OS=Cicer arietinum OX=3827 GN=RPL18 PE=2 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.3e-28
Identity = 67/96 (69.79%), Postives = 81/96 (84.38%), Query Frame = 0 

Query: 9   MYISKAVNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARA 68
           +++SK VN+PP+SLSRLIK+M+GKE KI V+VG VTDDIRVYDVP++KVTAL+FTETARA
Sbjct: 49  LFMSK-VNRPPLSLSRLIKYMQGKEGKIGVVVGAVTDDIRVYDVPTIKVTALKFTETARA 108

Query: 69  RIEKASGECLTFDQLALRAPLGENTWSRKMGSKYSR 105
           RI+KA GECLTFDQLALR PL +    R  G K +R
Sbjct: 109 RIQKAGGECLTFDQLALRLPLTDTVLLR--GPKNAR 141

[Close]
BLAST of Tan0016976 vs. ExPASy Swiss-Prot
Match: O22254 (Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18A PE=3 SV=3)

HSP 1 Score: 115.2 bits (287), Expect = 5.0e-25
Identity = 60/87 (68.97%), Postives = 72/87 (82.76%), Query Frame = 0 

Query: 9   MYISKAVNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARA 68
           +++SK VNK P+SLSRL+++M GK+ KI VIVGTVTDD+R+ DVP+L VTALRFTE+ARA
Sbjct: 52  LFMSK-VNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARA 111

Query: 69  RIEKASGECLTFDQLALRAPLGENTWS 96
           RI KA GECLTFDQLAL  P    TWS
Sbjct: 112 RIHKAGGECLTFDQLALPCP----TWS 133

[Close]
BLAST of Tan0016976 vs. ExPASy Swiss-Prot
Match: Q4PM04 (60S ribosomal protein L18 OS=Ixodes scapularis OX=6945 GN=RpL18 PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.2e-21
Identity = 56/95 (58.95%), Postives = 71/95 (74.74%), Query Frame = 0 

Query: 15  VNKPPISLSRLIKFMK--GKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARARIEK 74
           +NKP ISL+R+ +FMK  G+E+ I V+VGTVTDD+R+YDVP L++ ALR TE ARARI K
Sbjct: 56  INKPVISLARVTRFMKKPGRENLIAVVVGTVTDDLRLYDVPKLRLCALRVTERARARILK 115

Query: 75  ASGECLTFDQLALRAPLGENTWSRKMGSKYSRSLC 108
           A GE LTFDQLA++AP G+ T     G + SR  C
Sbjct: 116 AGGEILTFDQLAVQAPKGKGT-VLMQGPRNSREAC 149

[Close]
BLAST of Tan0016976 vs. NCBI nr
Match: XP_022999399.1 (60S ribosomal protein L18-2 [Cucurbita maxima])

HSP 1 Score: 147.9 bits (372), Expect = 5.3e-32
Identity = 76/85 (89.41%), Postives = 82/85 (96.47%), Query Frame = 0 

Query: 9   MYISKAVNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARA 68
           +++SK VNKPPISLSRLIKFMKGKEDKI VIVGTVTDDIRVY+VP+LKVTALRFTETARA
Sbjct: 52  LFMSK-VNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARA 111

Query: 69  RIEKASGECLTFDQLALRAPLGENT 94
           RIEKA GECLTFDQLALRAPLG+NT
Sbjct: 112 RIEKAGGECLTFDQLALRAPLGQNT 135

[Close]
BLAST of Tan0016976 vs. NCBI nr
Match: XP_022965965.1 (60S ribosomal protein L18-3 [Cucurbita maxima] >KAG6599207.1 60S ribosomal protein L18-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 147.9 bits (372), Expect = 5.3e-32
Identity = 76/85 (89.41%), Postives = 82/85 (96.47%), Query Frame = 0 

Query: 9   MYISKAVNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARA 68
           +++SK VNKPPISLSRLIKFMKGKEDKI VIVGTVTDDIRVY+VP+LKVTALRFTETARA
Sbjct: 52  LFMSK-VNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARA 111

Query: 69  RIEKASGECLTFDQLALRAPLGENT 94
           RIEKA GECLTFDQLALRAPLG+NT
Sbjct: 112 RIEKAGGECLTFDQLALRAPLGQNT 135

[Close]
BLAST of Tan0016976 vs. NCBI nr
Match: KAG7030142.1 (60S ribosomal protein L18-3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 147.9 bits (372), Expect = 5.3e-32
Identity = 76/85 (89.41%), Postives = 82/85 (96.47%), Query Frame = 0 

Query: 9   MYISKAVNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARA 68
           +++SK VNKPPISLSRLIKFMKGKEDKI VIVGTVTDDIRVY+VP+LKVTALRFTETARA
Sbjct: 81  LFMSK-VNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARA 140

Query: 69  RIEKASGECLTFDQLALRAPLGENT 94
           RIEKA GECLTFDQLALRAPLG+NT
Sbjct: 141 RIEKAGGECLTFDQLALRAPLGQNT 164

[Close]
BLAST of Tan0016976 vs. NCBI nr
Match: KAG6586240.1 (60S ribosomal protein L18-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 147.5 bits (371), Expect = 6.9e-32
Identity = 75/85 (88.24%), Postives = 82/85 (96.47%), Query Frame = 0 

Query: 9   MYISKAVNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARA 68
           +++SK VNKPPISLSRLIKFMKGKEDKI V+VGTVTDDIRVY+VP+LKVTALRFTETARA
Sbjct: 52  LFMSK-VNKPPISLSRLIKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARA 111

Query: 69  RIEKASGECLTFDQLALRAPLGENT 94
           RIEKA GECLTFDQLALRAPLG+NT
Sbjct: 112 RIEKAGGECLTFDQLALRAPLGQNT 135

[Close]
BLAST of Tan0016976 vs. NCBI nr
Match: KAG7030228.1 (60S ribosomal protein L18-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 147.1 bits (370), Expect = 9.1e-32
Identity = 74/79 (93.67%), Postives = 77/79 (97.47%), Query Frame = 0 

Query: 15 VNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARARIEKAS 74
          VNKPPISLSRLIKFMKGKEDKI VIVGTVTDDIRVY+VP+LKVTALRFTETARARIEKA 
Sbjct: 4  VNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAG 63

Query: 75 GECLTFDQLALRAPLGENT 94
          GECLTFDQLALRAPLG+NT
Sbjct: 64 GECLTFDQLALRAPLGQNT 82

[Close]
BLAST of Tan0016976 vs. ExPASy TrEMBL
Match: A0A6J1HQ85 (60S ribosomal protein L18-3 OS=Cucurbita maxima OX=3661 GN=LOC111465687 PE=3 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 2.6e-32
Identity = 76/85 (89.41%), Postives = 82/85 (96.47%), Query Frame = 0 

Query: 9   MYISKAVNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARA 68
           +++SK VNKPPISLSRLIKFMKGKEDKI VIVGTVTDDIRVY+VP+LKVTALRFTETARA
Sbjct: 52  LFMSK-VNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARA 111

Query: 69  RIEKASGECLTFDQLALRAPLGENT 94
           RIEKA GECLTFDQLALRAPLG+NT
Sbjct: 112 RIEKAGGECLTFDQLALRAPLGQNT 135

[Close]
BLAST of Tan0016976 vs. ExPASy TrEMBL
Match: A0A6J1KGZ8 (60S ribosomal protein L18-2 OS=Cucurbita maxima OX=3661 GN=LOC111493781 PE=3 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 2.6e-32
Identity = 76/85 (89.41%), Postives = 82/85 (96.47%), Query Frame = 0 

Query: 9   MYISKAVNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARA 68
           +++SK VNKPPISLSRLIKFMKGKEDKI VIVGTVTDDIRVY+VP+LKVTALRFTETARA
Sbjct: 52  LFMSK-VNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARA 111

Query: 69  RIEKASGECLTFDQLALRAPLGENT 94
           RIEKA GECLTFDQLALRAPLG+NT
Sbjct: 112 RIEKAGGECLTFDQLALRAPLGQNT 135

[Close]
BLAST of Tan0016976 vs. ExPASy TrEMBL
Match: A0A1R3IHC6 (Ribosomal protein L18e OS=Corchorus olitorius OX=93759 GN=COLO4_23326 PE=3 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 5.7e-32
Identity = 74/85 (87.06%), Postives = 82/85 (96.47%), Query Frame = 0 

Query: 9   MYISKAVNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARA 68
           +++SK VNKPP+SLSRLI+FMKGKEDKI V+VGTVTDDIRVYDVP+LKVTALRFTETARA
Sbjct: 52  LFMSK-VNKPPLSLSRLIEFMKGKEDKIAVVVGTVTDDIRVYDVPALKVTALRFTETARA 111

Query: 69  RIEKASGECLTFDQLALRAPLGENT 94
           RIEKA GECLTFDQLALRAPLG+NT
Sbjct: 112 RIEKAGGECLTFDQLALRAPLGQNT 135

[Close]
BLAST of Tan0016976 vs. ExPASy TrEMBL
Match: A0A2C9WMY0 (Ribosomal_L18e/L15P domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_01G221200 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 7.5e-32
Identity = 73/85 (85.88%), Postives = 82/85 (96.47%), Query Frame = 0 

Query: 9   MYISKAVNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARA 68
           +++SK +NKPP+SLSRLI+FMKGKEDKI V+VGTVTDDIRVY+VPSLKVTALRFTETARA
Sbjct: 52  LFMSK-INKPPLSLSRLIRFMKGKEDKIAVVVGTVTDDIRVYEVPSLKVTALRFTETARA 111

Query: 69  RIEKASGECLTFDQLALRAPLGENT 94
           RIEKA GECLTFDQLALRAPLG+NT
Sbjct: 112 RIEKAGGECLTFDQLALRAPLGQNT 135

[Close]
BLAST of Tan0016976 vs. ExPASy TrEMBL
Match: A0A5D2TTS7 (Ribosomal_L18e/L15P domain-containing protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D08G092700v1 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 7.5e-32
Identity = 73/90 (81.11%), Postives = 86/90 (95.56%), Query Frame = 0 

Query: 9   MYISKAVNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARA 68
           +++SK VNKPP+SLSRLI+FMKGKEDKI V+VGTVTDDIRVY+VP+LKVTALRFTETARA
Sbjct: 52  LFMSK-VNKPPLSLSRLIEFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARA 111

Query: 69  RIEKASGECLTFDQLALRAPLGENTWSRKM 99
           RI+KA GECLTFDQLALRAPLG+NT+S ++
Sbjct: 112 RIDKAGGECLTFDQLALRAPLGQNTFSSEV 140

[Close]
BLAST of Tan0016976 vs. TAIR 10
Match: AT3G05590.1 (ribosomal protein L18 )

HSP 1 Score: 132.5 bits (332), Expect = 2.2e-31
Identity = 64/85 (75.29%), Postives = 79/85 (92.94%), Query Frame = 0 

Query: 9   MYISKAVNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARA 68
           +++SK VNK P+SLSRL++FM GKEDKI V+VGT+TDD+RV+++P++KVTALRFTE ARA
Sbjct: 52  LFMSK-VNKAPLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARA 111

Query: 69  RIEKASGECLTFDQLALRAPLGENT 94
           RIEKA GECLTFDQLALRAPLG+NT
Sbjct: 112 RIEKAGGECLTFDQLALRAPLGQNT 135

[Close]
BLAST of Tan0016976 vs. TAIR 10
Match: AT5G27850.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 131.3 bits (329), Expect = 4.8e-31
Identity = 63/85 (74.12%), Postives = 79/85 (92.94%), Query Frame = 0 

Query: 9   MYISKAVNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARA 68
           +++SK VNK P+SLSRL++FM GK+DKI V+VGT+TDD+RV+++P++KVTALRFTE ARA
Sbjct: 52  LFMSK-VNKAPLSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARA 111

Query: 69  RIEKASGECLTFDQLALRAPLGENT 94
           RIEKA GECLTFDQLALRAPLG+NT
Sbjct: 112 RIEKAGGECLTFDQLALRAPLGQNT 135

[Close]
BLAST of Tan0016976 vs. TAIR 10
Match: AT2G47570.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 114.4 bits (285), Expect = 6.1e-26
Identity = 58/81 (71.60%), Postives = 67/81 (82.72%), Query Frame = 0 

Query: 15 VNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARARIEKAS 74
          VNK P+SLSRL+++M GK+ KI VIVGTVTDD+R+ DVP+L VTALRFTE+ARARI KA 
Sbjct: 4  VNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIHKAG 63

Query: 75 GECLTFDQLALRAPLGENTWS 96
          GECLTFDQLAL  P    TWS
Sbjct: 64 GECLTFDQLALPCP----TWS 80

[Close]
BLAST of Tan0016976 vs. TAIR 10
Match: AT2G47570.2 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 114.4 bits (285), Expect = 6.1e-26
Identity = 58/81 (71.60%), Postives = 67/81 (82.72%), Query Frame = 0 

Query: 15 VNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARARIEKAS 74
          VNK P+SLSRL+++M GK+ KI VIVGTVTDD+R+ DVP+L VTALRFTE+ARARI KA 
Sbjct: 4  VNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIHKAG 63

Query: 75 GECLTFDQLALRAPLGENTWS 96
          GECLTFDQLAL  P    TWS
Sbjct: 64 GECLTFDQLALPCP----TWS 80

The following BLAST results are available for this feature:
BLAST of Tan0016976 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P427913.0e-3075.2960S ribosomal protein L18-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18B PE=1 SV=2[more]
Q940B06.7e-3074.1260S ribosomal protein L18-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18C PE=2 SV=1[more]
O657291.3e-2869.7960S ribosomal protein L18 (Fragment) OS=Cicer arietinum OX=3827 GN=RPL18 PE=2 SV... [more]
O222545.0e-2568.97Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18A P... [more]
Q4PM041.2e-2158.9560S ribosomal protein L18 OS=Ixodes scapularis OX=6945 GN=RpL18 PE=2 SV=1[more]
BLAST of Tan0016976 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022999399.15.3e-3289.4160S ribosomal protein L18-2 [Cucurbita maxima][more]
XP_022965965.15.3e-3289.4160S ribosomal protein L18-3 [Cucurbita maxima] >KAG6599207.1 60S ribosomal prote... [more]
KAG7030142.15.3e-3289.4160S ribosomal protein L18-3, partial [Cucurbita argyrosperma subsp. argyrosperma... [more]
KAG6586240.16.9e-3288.2460S ribosomal protein L18-3, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG7030228.19.1e-3293.6760S ribosomal protein L18-2 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Tan0016976 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HQ852.6e-3289.4160S ribosomal protein L18-3 OS=Cucurbita maxima OX=3661 GN=LOC111465687 PE=3 SV=... [more]
A0A6J1KGZ82.6e-3289.4160S ribosomal protein L18-2 OS=Cucurbita maxima OX=3661 GN=LOC111493781 PE=3 SV=... [more]
A0A1R3IHC65.7e-3287.06Ribosomal protein L18e OS=Corchorus olitorius OX=93759 GN=COLO4_23326 PE=3 SV=1[more]
A0A2C9WMY07.5e-3285.88Ribosomal_L18e/L15P domain-containing protein OS=Manihot esculenta OX=3983 GN=MA... [more]
A0A5D2TTS77.5e-3281.11Ribosomal_L18e/L15P domain-containing protein OS=Gossypium mustelinum OX=34275 G... [more]
BLAST of Tan0016976 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G05590.12.2e-3175.29ribosomal protein L18 [more]
AT5G27850.14.8e-3174.12Ribosomal protein L18e/L15 superfamily protein [more]
AT2G47570.16.1e-2671.60Ribosomal protein L18e/L15 superfamily protein [more]
AT2G47570.26.1e-2671.60Ribosomal protein L18e/L15 superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.100.10.10coord: 7..111
e-value: 1.3E-36
score: 127.9
NoneNo IPR availablePANTHERPTHR10934:SF1560S RIBOSOMAL PROTEIN L18-2-LIKEcoord: 9..104
IPR021131Ribosomal protein L18e/L15PPFAMPF17135Ribosomal_L18coord: 9..94
e-value: 5.7E-37
score: 126.9
IPR000039Ribosomal protein L18ePANTHERPTHR1093460S RIBOSOMAL PROTEIN L18coord: 9..104
IPR036227Ribosomal L18e/L15P superfamilySUPERFAMILY52080Ribosomal proteins L15p and L18ecoord: 12..94

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0016976.1Tan0016976.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005737 cytoplasm
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003735 structural constituent of ribosome