Tan0016800 (gene) Snake gourd v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GGCTTTCCTTCAATCTCTCCTCTCTCCTTTGGCAGAGAGGCTGCAGCCTTTGAAATTCTCCACCCGCCGGCGGTTTTTCCAGACTCCGGCATATAAACACAAGGTATTTATTTTGTATTGAACACGGGTTAAGTTAAAATTTGTTTAGTTTCGATTAATTAGTGCGAGACTATAGTTATAATTTTAGAAGTTTGAATTCGGTTTAATAGGATTTTGTTAAATCTCTCTAAATGTTCCTGATATTACTGAAATTAAAGATAAGTTAACAAATCTGTCTTCAATTTATAATGTTTGTATAGTTCTAAAAGTTTCAATATGGTTTAGTTTGTTCTTTGAAAATATCCTTTCGATACAACAAAAACGTGTTGGAGGGGAAGACAATGAGTTCATGTTGAAAGAAAACTTGTCATATAAGAACCTATGCATATTTGACAAGTGTTATAACCAAACTAATGGGAACATCAATTAAAATTATTAAGACAGAGAAATTGGATTGAAACTAAACACAACCTGACATCACTAAAATGTTATTACACTTTGAAATACATTCAATTGTTTGTTATACTTCACTTTTACATTAGAAAAAAATCTGTTTCAGAGTTATTAGATCACTGAAATTATCTTTCATTCACAAATTTTGATTGAAACACTATACTAGCCCAAAGAAAATCCTCATTTTAACTTTTCATTTTCGATCAACATCTTAAAAGAAAAAAAAAAACTTCAATCAAATTCATTAGTTGAGTATATGTTTTAGATCCTATTGTTTATTTATCTCCTTATATTTTAATATTTCTTAATTGAATTTTTCACTATTGATAAATATTCAAATTAGACGAATATTTACCTGACATAATAATTAGTGCCTACTGGATTAGCAAAAATTCAAAAAAGAAAAATATATATTTAAAAAAAGTAAATATCTAATTCTTTCTTAAAATTTCTATTTTTGTGGGTTAGAATATCATTTTAGCCTCTCTGCTTTTGGTTTGCGTACTTTCAAATGTCCTAATTCATGTACTTTTAATAAAGCTTAAATCCGGTCTCTACTATTAGTTTATTGTTAATTTTTCTTCAAAAAATTAGTTTCTATTAGTTTTATCTCTACAAAATTTGAAAATATGTTCACATTGTATTTTTTTAAATCATCCATTTGAAAAAATGGTATTTTGAACCATTGTTTTTAGGAATTTCGAGACTTCTTCACTTACATGATTTTTTTTTCTGATATAAATATTAATAAAAATTAGAGCTTAATTTGAAAAAAATACCGACTATACATATACTAAAACATGTGTATTTAATTAGTGGATTTATTTTTATCATAATTTGATCTCGCTGCATTCAAAGTTAAATAATGGAGGAAAGGATGGAGGCAAAACAGGGGAAAACAAGCTGGAAAACAGAGAGTTCAAAAATGGCGGCGTTGCCAGATTACGACATGGACATGGAAGAGCTGAAGAAAAGCCCGAATTTGCTGATGTCGCCAATCGCCTTATCTCGCATCACAAAATCCAACTGTCTGTGTTCTCCCACCACCCATATCGGATCTTTTAGGTGCAGGCGTCACCGGACCTCCGCCATCACTCGCGGCGCCTCCGTCGGCTCCAATCTCTCCGACTTGGTTCGCAAGTCTGACGCCGCCGGTGACTCCGTTTGAGAATATCACATCGGCGCTAACCCAAGCTCTCTCTTTTAGGAAAACCTTTAATTTCAATTCTAATGCTCTCTTCTCATTTTAATAAAACCATGTAATAGCTAGTGATTATGAATCCTTTTTTTGTTCATGCTTATGTGTCCCTCTTCTTCCTTTCGTTTATTTATTTAGTCTCTTATGTTTCAGCTTCATCA GGCTTTCCTTCAATCTCTCCTCTCTCCTTTGGCAGAGAGGCTGCAGCCTTTGAAATTCTCCACCCGCCGGCGGTTTTTCCAGACTCCGGCATATAAACACAAGTTAAATAATGGAGGAAAGGATGGAGGCAAAACAGGGGAAAACAAGCTGGAAAACAGAGAGTTCAAAAATGGCGGCGTTGCCAGATTACGACATGGACATGGAAGAGCTGAAGAAAAGCCCGAATTTGCTGATGTCGCCAATCGCCTTATCTCGCATCACAAAATCCAACTGTCTGTGTTCTCCCACCACCCATATCGGATCTTTTAGGTGCAGGCGTCACCGGACCTCCGCCATCACTCGCGGCGCCTCCGTCGGCTCCAATCTCTCCGACTTGGTTCGCAAGTCTGACGCCGCCGGTGACTCCGTTTGAGAATATCACATCGGCGCTAACCCAAGCTCTCTCTTTTAGGAAAACCTTTAATTTCAATTCTAATGCTCTCTTCTCATTTTAATAAAACCATGTAATAGCTAGTGATTATGAATCCTTTTTTTGTTCATGCTTATGTGTCCCTCTTCTTCCTTTCGTTTATTTATTTAGTCTCTTATGTTTCAGCTTCATCA ATGGAGGAAAGGATGGAGGCAAAACAGGGGAAAACAAGCTGGAAAACAGAGAGTTCAAAAATGGCGGCGTTGCCAGATTACGACATGGACATGGAAGAGCTGAAGAAAAGCCCGAATTTGCTGATGTCGCCAATCGCCTTATCTCGCATCACAAAATCCAACTGTCTGTGTTCTCCCACCACCCATATCGGATCTTTTAGGTGCAGGCGTCACCGGACCTCCGCCATCACTCGCGGCGCCTCCGTCGGCTCCAATCTCTCCGACTTGGTTCGCAAGTCTGACGCCGCCGGTGACTCCGTTTGA MEERMEAKQGKTSWKTESSKMAALPDYDMDMEELKKSPNLLMSPIALSRITKSNCLCSPTTHIGSFRCRRHRTSAITRGASVGSNLSDLVRKSDAAGDSV Homology
BLAST of Tan0016800 vs. NCBI nr
Match: KGN55991.1 (hypothetical protein Csa_011649 [Cucumis sativus]) HSP 1 Score: 111.3 bits (277), Expect = 4.8e-21 Identity = 62/100 (62.00%), Postives = 78/100 (78.00%), Query Frame = 0
BLAST of Tan0016800 vs. NCBI nr
Match: XP_022143490.1 (uncharacterized protein LOC111013367 [Momordica charantia]) HSP 1 Score: 109.0 bits (271), Expect = 2.4e-20 Identity = 66/101 (65.35%), Postives = 79/101 (78.22%), Query Frame = 0
BLAST of Tan0016800 vs. NCBI nr
Match: TYK19387.1 (putative PGPS/D10 protein [Cucumis melo var. makuwa]) HSP 1 Score: 107.5 bits (267), Expect = 7.0e-20 Identity = 60/100 (60.00%), Postives = 78/100 (78.00%), Query Frame = 0
BLAST of Tan0016800 vs. NCBI nr
Match: XP_010103953.1 (uncharacterized protein LOC21403113 [Morus notabilis] >EXB97656.1 hypothetical protein L484_020205 [Morus notabilis]) HSP 1 Score: 85.9 bits (211), Expect = 2.2e-13 Identity = 50/105 (47.62%), Postives = 67/105 (63.81%), Query Frame = 0
BLAST of Tan0016800 vs. NCBI nr
Match: KGN44385.1 (hypothetical protein Csa_015645 [Cucumis sativus]) HSP 1 Score: 85.1 bits (209), Expect = 3.7e-13 Identity = 43/72 (59.72%), Postives = 53/72 (73.61%), Query Frame = 0
BLAST of Tan0016800 vs. ExPASy TrEMBL
Match: A0A0A0L7C7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G045050 PE=4 SV=1) HSP 1 Score: 111.3 bits (277), Expect = 2.3e-21 Identity = 62/100 (62.00%), Postives = 78/100 (78.00%), Query Frame = 0
BLAST of Tan0016800 vs. ExPASy TrEMBL
Match: A0A6J1CNY2 (uncharacterized protein LOC111013367 OS=Momordica charantia OX=3673 GN=LOC111013367 PE=4 SV=1) HSP 1 Score: 109.0 bits (271), Expect = 1.2e-20 Identity = 66/101 (65.35%), Postives = 79/101 (78.22%), Query Frame = 0
BLAST of Tan0016800 vs. ExPASy TrEMBL
Match: A0A5D3D753 (Putative PGPS/D10 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G00180 PE=4 SV=1) HSP 1 Score: 107.5 bits (267), Expect = 3.4e-20 Identity = 60/100 (60.00%), Postives = 78/100 (78.00%), Query Frame = 0
BLAST of Tan0016800 vs. ExPASy TrEMBL
Match: W9SBP1 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_020205 PE=4 SV=1) HSP 1 Score: 85.9 bits (211), Expect = 1.1e-13 Identity = 50/105 (47.62%), Postives = 67/105 (63.81%), Query Frame = 0
BLAST of Tan0016800 vs. ExPASy TrEMBL
Match: A0A0A0K3W3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G278200 PE=4 SV=1) HSP 1 Score: 85.1 bits (209), Expect = 1.8e-13 Identity = 43/72 (59.72%), Postives = 53/72 (73.61%), Query Frame = 0
BLAST of Tan0016800 vs. TAIR 10
Match: AT5G55980.1 (serine-rich protein-related ) HSP 1 Score: 60.5 bits (145), Expect = 9.1e-10 Identity = 37/96 (38.54%), Postives = 54/96 (56.25%), Query Frame = 0
BLAST of Tan0016800 vs. TAIR 10
Match: AT1G24577.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67910.2); Has 115 Blast hits to 115 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 51.2 bits (121), Expect = 5.5e-07 Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 0
BLAST of Tan0016800 vs. TAIR 10
Match: AT3G13227.1 (serine-rich protein-related ) HSP 1 Score: 51.2 bits (121), Expect = 5.5e-07 Identity = 39/112 (34.82%), Postives = 55/112 (49.11%), Query Frame = 0
BLAST of Tan0016800 vs. TAIR 10
Match: AT1G67910.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1); Has 167 Blast hits to 167 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 49.3 bits (116), Expect = 2.1e-06 Identity = 21/33 (63.64%), Postives = 27/33 (81.82%), Query Frame = 0
BLAST of Tan0016800 vs. TAIR 10
Match: AT1G67910.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1). ) HSP 1 Score: 49.3 bits (116), Expect = 2.1e-06 Identity = 21/33 (63.64%), Postives = 27/33 (81.82%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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