Tan0016755 (gene) Snake gourd v1

Overview
NameTan0016755
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionprotein LHCP TRANSLOCATION DEFECT
LocationLG01: 17950065 .. 17952406 (-)
RNA-Seq ExpressionTan0016755
SyntenyTan0016755
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTCTGTAAAACAGTTACCCACAATCCCTTCGTCCTCATTGGCCCACCAAATTCTGAGTGATGGATAGAATCTGCAAGAGTGCGAACAAAGCACATTTCCTCTTACAGAACTTGCACAAACTCAGCCATCCATGGCTTCCATCTCCTGCACTACCTCCATTAATCTCACCCCAAGATCCTTCAATTCTCGCCCCCCATTGAAATTGGGTTCCCAGTTTCTTGGTTTTCAATCGAAGCTCCGATGGGTCTCGCCCATCGCCATTGGACCCTCCAATGGGTCTAGAGCTACGTGCTGGTTCAATTTTAGGCAAAATGCCGAAGGTGCGGGTATTTATGGCAGCCAGTCCCGAGATGACTTCAATAGAGACGATGTTGAGCAGGTTTTTTTTTCTTTTTTCTTTTTTTACTGTTTTATTTCTTTGTATTTGTGTGATTATGGATTTCTGATTATTTTCTCTGGGCACTGTGATTGTTGAAGTGTAGGTGTTTGTTGTTTCTTCCTGGTTTGGGGCTAATTCGTATGATTTGGATGTTGAAATGAATTCCTTCTTAACCTTTTGCTGTTTTACTGCTGAGCTTGCTGTTTTGTTTTGTTTTTTTTTCTTATAGCTGAGTGAAGAGAGTCTTAGTTCTTTGTATTTTTGTGATAATGTATGTTGTAATTCTGGTTTTAGTTTGTTAAACCACAAAACCAAAAATCTTAGAGCCTTCGGGTAATTGTTTTTTTTAATATCCAACATAACCTTAGGTTTAATAATCATTTGGTTTCTAGTTTTTAAAAATTTTACTTACTTTTTCATCATTTCTCTACAATAGATTTCATTTCTCTTAAAAAAAACCTTTGAATTCTTAACCAAATTTAAAAAACAAAAGTAATTTTTCGAAAACTACTTTTATTTTTAGCTTTCAAAACTTGACTTGGGTTTTGGGAACATATGTAAAATGTAGATAACAAAACAAAGAAACTTAGAGGTGGAAGTAGTGTTGATAGACTTAATTTTCAAAAACAAAAAAACAAACAGTTATCAAATCGATCTTAGAAAATCAAATTGTTATTTTGCTTCACTAGCCCCATTATAAACAACATTATAACTTCAGAACTTGGTGAAAATTGGAAAGCCATTTGTGATATGAGATTGTGAGGAAGGAAACCTTAAACACTATAATACATAGACTCATAACTTGTGCAGGCAAATGCTTTTTGTGTGAGAAGCTCTACTTTCACATAATGAAACTAAAAAAGATGTGCTATTGTGAAAAGTGCATAGAACTTCCTACTTCCCTCAACTAAAACTGCACATATTACTGTTGCAATTCCTCGATTTGCTGTATGTAAGGCCTAAGGGTAGAAGCAAAAGTATTCCTTCATCCTTGTGTCTCCTTTTGCTTTGAAAATCTGCTGAATGACCTTGTCCATAGTGTAAGAACTCGGTCGAATCGTATTTTTCTTAGTATATAACTAGATGAGAACAATATGAAGCACACAAATGATAACCCATAAGCATGGTTGCTTGATTTGATTCGAATTGCATTGGTCTGTGACTTGAGATGACTCCCATTGTATCGTGCTTAATTCTTTTCAATTTGATGATTCATGATGAATTATAATAACCAAACACGTTGCCATCCCAAATGCAAAGGATATCCAGAAGTAAGTCTACTTTGGTGTTCTTATCCAATCATTCATTCATTTATGATAGGTAAACTCAAACAACTTATGTTATAGCATGTTTTTTTTAATTAGTTAATGAGTGTCAACTTGTCACTTCATACGTCGATAGAATCTTAATCCACATATTCATATAAAAAGTTGTATTATGTCGATACTTTTCGAGTCGACATCATTTGAGAATTTACAAGTGAACATTTTGGTTGTGCAGTACTTTAACTACATGGGAATGCTGGCTGTAGAGGGTACGTATGACAAAATGGAAGCTCTTTTGAGCCAAGACATTCATCCAGTGGACATTTTGCTGATGCTGGCTGCATCAGAAGGGGACAAACCAAAACTTGAGGAGCTATTGAGAGCTGGGGCTAATTATGATGTGAAAGATGTAGATGGTCGAACTGCCGTGGATAGGGCAGCTAATGAAGAAATCAAGGATTTTATTCTTAACTTTTCTGTTCAAAAGGCATAACTCGGTTTCTCTTTCTTATTTTTTGTTATTGTGTGGCTCTGTTTTGTTAGGTTTAGAAAGAGGTTTAAGACTTGTATTCCACTGCCTTCTTATGTATATCATAATATTGTATTTGAACGGTACTTTTTTCCTCCATTAGTAGGGAATCACTTTGAGATCTAAAGAGTTGTATGGGGCGCTGAGTAAGTTATAATTACATGGGGT

mRNA sequence

CCTCTGTAAAACAGTTACCCACAATCCCTTCGTCCTCATTGGCCCACCAAATTCTGAGTGATGGATAGAATCTGCAAGAGTGCGAACAAAGCACATTTCCTCTTACAGAACTTGCACAAACTCAGCCATCCATGGCTTCCATCTCCTGCACTACCTCCATTAATCTCACCCCAAGATCCTTCAATTCTCGCCCCCCATTGAAATTGGGTTCCCAGTTTCTTGGTTTTCAATCGAAGCTCCGATGGGTCTCGCCCATCGCCATTGGACCCTCCAATGGGTCTAGAGCTACGTGCTGGTTCAATTTTAGGCAAAATGCCGAAGGTGCGGGTATTTATGGCAGCCAGTCCCGAGATGACTTCAATAGAGACGATGTTGAGCAGTACTTTAACTACATGGGAATGCTGGCTGTAGAGGGTACGTATGACAAAATGGAAGCTCTTTTGAGCCAAGACATTCATCCAGTGGACATTTTGCTGATGCTGGCTGCATCAGAAGGGGACAAACCAAAACTTGAGGAGCTATTGAGAGCTGGGGCTAATTATGATGTGAAAGATGTAGATGGTCGAACTGCCGTGGATAGGGCAGCTAATGAAGAAATCAAGGATTTTATTCTTAACTTTTCTGTTCAAAAGGCATAACTCGGTTTCTCTTTCTTATTTTTTGTTATTGTGTGGCTCTGTTTTGTTAGGTTTAGAAAGAGGTTTAAGACTTGTATTCCACTGCCTTCTTATGTATATCATAATATTGTATTTGAACGGTACTTTTTTCCTCCATTAGTAGGGAATCACTTTGAGATCTAAAGAGTTGTATGGGGCGCTGAGTAAGTTATAATTACATGGGGT

Coding sequence (CDS)

ATGGCTTCCATCTCCTGCACTACCTCCATTAATCTCACCCCAAGATCCTTCAATTCTCGCCCCCCATTGAAATTGGGTTCCCAGTTTCTTGGTTTTCAATCGAAGCTCCGATGGGTCTCGCCCATCGCCATTGGACCCTCCAATGGGTCTAGAGCTACGTGCTGGTTCAATTTTAGGCAAAATGCCGAAGGTGCGGGTATTTATGGCAGCCAGTCCCGAGATGACTTCAATAGAGACGATGTTGAGCAGTACTTTAACTACATGGGAATGCTGGCTGTAGAGGGTACGTATGACAAAATGGAAGCTCTTTTGAGCCAAGACATTCATCCAGTGGACATTTTGCTGATGCTGGCTGCATCAGAAGGGGACAAACCAAAACTTGAGGAGCTATTGAGAGCTGGGGCTAATTATGATGTGAAAGATGTAGATGGTCGAACTGCCGTGGATAGGGCAGCTAATGAAGAAATCAAGGATTTTATTCTTAACTTTTCTGTTCAAAAGGCATAA

Protein sequence

MASISCTTSINLTPRSFNSRPPLKLGSQFLGFQSKLRWVSPIAIGPSNGSRATCWFNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAVDRAANEEIKDFILNFSVQKA
Homology
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BLAST of Tan0016755 vs. ExPASy Swiss-Prot
Match: Q8VY88 (Protein LHCP TRANSLOCATION DEFECT OS=Arabidopsis thaliana OX=3702 GN=LTD PE=1 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 9.5e-57
Identity = 112/169 (66.27%), Postives = 132/169 (78.11%), Query Frame = 0 

Query: 3   SISCTTSINLTPRSFNSRPPLKLGSQFLGFQSKLRWVSPIAIGPSNGSRATCWFNFRQN- 62
           S SC  S+  +  S  S  P  L S+FLG ++    + P  +GPSNGSR TCWF F +N 
Sbjct: 7   SFSCAPSLATSLFSTTSSSPRLLSSRFLGTRNLKLRIRPARLGPSNGSRTTCWFKFGKNG 66

Query: 63  --AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 122
             AE AGIYGSQSRDDF+RDDVEQYFNYMGMLAVEGTY KMEALL+ +IHPVDILLMLAA
Sbjct: 67  VDAENAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYSKMEALLNLNIHPVDILLMLAA 126

Query: 123 SEGDKPKLEELLRAGANYDVKDVDGRTAVDRAANEEIKDFILNFSVQKA 169
           +EGD+PK+EELL+AGA+Y VKD DGRTA+DRA +EEI+D IL +S QKA
Sbjct: 127 TEGDRPKIEELLKAGADYSVKDADGRTAIDRANSEEIRDLILGYSTQKA 175

[Close]
BLAST of Tan0016755 vs. ExPASy Swiss-Prot
Match: A2YLX7 (Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. indica OX=39946 GN=LTD PE=3 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.6e-48
Identity = 108/175 (61.71%), Postives = 131/175 (74.86%), Query Frame = 0 

Query: 1   MASISCTTSINLTPRSFNSRPPLKLGSQFLGFQSKLRWVSP---IAIGPSNGS---RATC 60
           MASI CT  ++    S ++    +   +     ++L W+ P    A+ P++ S     TC
Sbjct: 1   MASIPCTFQLSARASSASAAAAARRSPR---AAARLGWLRPSRLSAVVPASESGRVGPTC 60

Query: 61  WFNF-RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDI 120
           +F F  ++AEGAGIYGSQ RDDF+RDDVEQYFNYMGMLAVEGTYDKMEALL+QDIHPVDI
Sbjct: 61  FFKFGNKDAEGAGIYGSQGRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLNQDIHPVDI 120

Query: 121 LLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAVDRAANEEIKDFILNFSVQKA 169
           LLMLAASEGDKPKLEELLRAGA YDVKDVDGRTA+DRAA ++ ++FIL F+   A
Sbjct: 121 LLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTALDRAA-DDTREFILGFAATLA 171

[Close]
BLAST of Tan0016755 vs. ExPASy Swiss-Prot
Match: A3BKF2 (Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. japonica OX=39947 GN=LTD PE=2 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.6e-48
Identity = 108/175 (61.71%), Postives = 131/175 (74.86%), Query Frame = 0 

Query: 1   MASISCTTSINLTPRSFNSRPPLKLGSQFLGFQSKLRWVSP---IAIGPSNGS---RATC 60
           MASI CT  ++    S ++    +   +     ++L W+ P    A+ P++ S     TC
Sbjct: 1   MASIPCTFQLSARASSASAAAAARRSPR---AAARLGWLRPSRLSAVVPASESGRVGPTC 60

Query: 61  WFNF-RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDI 120
           +F F  ++AEGAGIYGSQ RDDF+RDDVEQYFNYMGMLAVEGTYDKMEALL+QDIHPVDI
Sbjct: 61  FFKFGNKDAEGAGIYGSQGRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLNQDIHPVDI 120

Query: 121 LLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAVDRAANEEIKDFILNFSVQKA 169
           LLMLAASEGDKPKLEELLRAGA YDVKDVDGRTA+DRAA ++ ++FIL F+   A
Sbjct: 121 LLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTALDRAA-DDTREFILGFAATLA 171

[Close]
BLAST of Tan0016755 vs. NCBI nr
Match: XP_004152919.1 (protein LHCP TRANSLOCATION DEFECT [Cucumis sativus] >KGN56143.1 hypothetical protein Csa_010871 [Cucumis sativus])

HSP 1 Score: 317.4 bits (812), Expect = 7.5e-83
Identity = 154/168 (91.67%), Postives = 161/168 (95.83%), Query Frame = 0 

Query: 1   MASISCTTSINLTPRSFNSRPPLKLGSQFLGFQSKLRWVSPIAIGPSNGSRATCWFNFRQ 60
           MAS+SCT+SINLTPRSFNSRPP KLGS FLG QS LRW+SP++IGPSNGSRATCWFN RQ
Sbjct: 1   MASLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQ 60

Query: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120
           NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS
Sbjct: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120

Query: 121 EGDKPKLEELLRAGANYDVKDVDGRTAVDRAANEEIKDFILNFSVQKA 169
           EGDKPKLEELLRAGA+YDVKDVDGRTAVDRA NEEIKDFILNFS +KA
Sbjct: 121 EGDKPKLEELLRAGASYDVKDVDGRTAVDRAVNEEIKDFILNFSAKKA 168

[Close]
BLAST of Tan0016755 vs. NCBI nr
Match: XP_038903413.1 (protein LHCP TRANSLOCATION DEFECT [Benincasa hispida])

HSP 1 Score: 316.2 bits (809), Expect = 1.7e-82
Identity = 154/168 (91.67%), Postives = 159/168 (94.64%), Query Frame = 0 

Query: 1   MASISCTTSINLTPRSFNSRPPLKLGSQFLGFQSKLRWVSPIAIGPSNGSRATCWFNFRQ 60
           MAS+SCT S+NLTPRSFNSRPP KL SQFLG QS LRWVSP+AIGPSNGSRATCWFN RQ
Sbjct: 1   MASLSCTNSMNLTPRSFNSRPPFKLSSQFLGLQSNLRWVSPVAIGPSNGSRATCWFNLRQ 60

Query: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120
           NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS
Sbjct: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120

Query: 121 EGDKPKLEELLRAGANYDVKDVDGRTAVDRAANEEIKDFILNFSVQKA 169
           EGDKPKLEELLRAGANYDVKDVDGRTA+DRA NEEIKDFILN SV+ A
Sbjct: 121 EGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNLSVKNA 168

[Close]
BLAST of Tan0016755 vs. NCBI nr
Match: XP_008463435.1 (PREDICTED: protein LHCP TRANSLOCATION DEFECT [Cucumis melo] >KAA0033947.1 protein LHCP TRANSLOCATION DEFECT [Cucumis melo var. makuwa] >TYK02597.1 protein LHCP TRANSLOCATION DEFECT [Cucumis melo var. makuwa])

HSP 1 Score: 313.2 bits (801), Expect = 1.4e-81
Identity = 152/168 (90.48%), Postives = 159/168 (94.64%), Query Frame = 0 

Query: 1   MASISCTTSINLTPRSFNSRPPLKLGSQFLGFQSKLRWVSPIAIGPSNGSRATCWFNFRQ 60
           MAS+SCTTSINLTPRSFNSRPP KL S FLG QS LRW+SP++IGPSNGSRATCWFN RQ
Sbjct: 1   MASLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQ 60

Query: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120
           NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS
Sbjct: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120

Query: 121 EGDKPKLEELLRAGANYDVKDVDGRTAVDRAANEEIKDFILNFSVQKA 169
           EGDKPKLEELLRAGA+YDVKDVDGRTA+DRA NEEIKDFIL FS +KA
Sbjct: 121 EGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA 168

[Close]
BLAST of Tan0016755 vs. NCBI nr
Match: XP_022985270.1 (protein LHCP TRANSLOCATION DEFECT [Cucurbita maxima])

HSP 1 Score: 311.6 bits (797), Expect = 4.1e-81
Identity = 155/168 (92.26%), Postives = 160/168 (95.24%), Query Frame = 0 

Query: 1   MASISCT-TSINLTPRSFNSRPPLKLGSQFLGFQSKLRWVSPIAIGPSNGSRATCWFNFR 60
           MAS+SCT TSINL+P SFNSRPPLKLGSQFLG QS LRWVSPIAIGPSNGSRATCWFN R
Sbjct: 1   MASVSCTSTSINLSPASFNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLR 60

Query: 61  QNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120
           QNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA
Sbjct: 61  QNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120

Query: 121 SEGDKPKLEELLRAGANYDVKDVDGRTAVDRAANEEIKDFILNFSVQK 168
           SEGDKPKLEELLRAGA YDVKDVDGRTA+DRA N+EIKDFILNFSV+K
Sbjct: 121 SEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK 168

[Close]
BLAST of Tan0016755 vs. NCBI nr
Match: XP_022932181.1 (protein LHCP TRANSLOCATION DEFECT [Cucurbita moschata])

HSP 1 Score: 309.3 bits (791), Expect = 2.0e-80
Identity = 154/168 (91.67%), Postives = 159/168 (94.64%), Query Frame = 0 

Query: 1   MASISCT-TSINLTPRSFNSRPPLKLGSQFLGFQSKLRWVSPIAIGPSNGSRATCWFNFR 60
           MAS+SCT TSINL+P S NSRPPLKLGSQFLG QS LRWVSPIAIGPSNGSRATCWFN R
Sbjct: 1   MASVSCTSTSINLSPTSLNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLR 60

Query: 61  QNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120
           QNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA
Sbjct: 61  QNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120

Query: 121 SEGDKPKLEELLRAGANYDVKDVDGRTAVDRAANEEIKDFILNFSVQK 168
           SEGDKPKLEELLRAGA YDVKDVDGRTA+DRA N+EIKDFILNFSV+K
Sbjct: 121 SEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK 168

[Close]
BLAST of Tan0016755 vs. ExPASy TrEMBL
Match: A0A0A0L309 (ANK_REP_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G078250 PE=4 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 3.6e-83
Identity = 154/168 (91.67%), Postives = 161/168 (95.83%), Query Frame = 0 

Query: 1   MASISCTTSINLTPRSFNSRPPLKLGSQFLGFQSKLRWVSPIAIGPSNGSRATCWFNFRQ 60
           MAS+SCT+SINLTPRSFNSRPP KLGS FLG QS LRW+SP++IGPSNGSRATCWFN RQ
Sbjct: 1   MASLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQ 60

Query: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120
           NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS
Sbjct: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120

Query: 121 EGDKPKLEELLRAGANYDVKDVDGRTAVDRAANEEIKDFILNFSVQKA 169
           EGDKPKLEELLRAGA+YDVKDVDGRTAVDRA NEEIKDFILNFS +KA
Sbjct: 121 EGDKPKLEELLRAGASYDVKDVDGRTAVDRAVNEEIKDFILNFSAKKA 168

[Close]
BLAST of Tan0016755 vs. ExPASy TrEMBL
Match: A0A5D3BT07 (Protein LHCP TRANSLOCATION DEFECT OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold925G00530 PE=4 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 6.8e-82
Identity = 152/168 (90.48%), Postives = 159/168 (94.64%), Query Frame = 0 

Query: 1   MASISCTTSINLTPRSFNSRPPLKLGSQFLGFQSKLRWVSPIAIGPSNGSRATCWFNFRQ 60
           MAS+SCTTSINLTPRSFNSRPP KL S FLG QS LRW+SP++IGPSNGSRATCWFN RQ
Sbjct: 1   MASLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQ 60

Query: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120
           NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS
Sbjct: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120

Query: 121 EGDKPKLEELLRAGANYDVKDVDGRTAVDRAANEEIKDFILNFSVQKA 169
           EGDKPKLEELLRAGA+YDVKDVDGRTA+DRA NEEIKDFIL FS +KA
Sbjct: 121 EGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA 168

[Close]
BLAST of Tan0016755 vs. ExPASy TrEMBL
Match: A0A1S3CJ75 (protein LHCP TRANSLOCATION DEFECT OS=Cucumis melo OX=3656 GN=LOC103501599 PE=4 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 6.8e-82
Identity = 152/168 (90.48%), Postives = 159/168 (94.64%), Query Frame = 0 

Query: 1   MASISCTTSINLTPRSFNSRPPLKLGSQFLGFQSKLRWVSPIAIGPSNGSRATCWFNFRQ 60
           MAS+SCTTSINLTPRSFNSRPP KL S FLG QS LRW+SP++IGPSNGSRATCWFN RQ
Sbjct: 1   MASLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQ 60

Query: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120
           NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS
Sbjct: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120

Query: 121 EGDKPKLEELLRAGANYDVKDVDGRTAVDRAANEEIKDFILNFSVQKA 169
           EGDKPKLEELLRAGA+YDVKDVDGRTA+DRA NEEIKDFIL FS +KA
Sbjct: 121 EGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA 168

[Close]
BLAST of Tan0016755 vs. ExPASy TrEMBL
Match: A0A6J1JAV9 (protein LHCP TRANSLOCATION DEFECT OS=Cucurbita maxima OX=3661 GN=LOC111483311 PE=4 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 2.0e-81
Identity = 155/168 (92.26%), Postives = 160/168 (95.24%), Query Frame = 0 

Query: 1   MASISCT-TSINLTPRSFNSRPPLKLGSQFLGFQSKLRWVSPIAIGPSNGSRATCWFNFR 60
           MAS+SCT TSINL+P SFNSRPPLKLGSQFLG QS LRWVSPIAIGPSNGSRATCWFN R
Sbjct: 1   MASVSCTSTSINLSPASFNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLR 60

Query: 61  QNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120
           QNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA
Sbjct: 61  QNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120

Query: 121 SEGDKPKLEELLRAGANYDVKDVDGRTAVDRAANEEIKDFILNFSVQK 168
           SEGDKPKLEELLRAGA YDVKDVDGRTA+DRA N+EIKDFILNFSV+K
Sbjct: 121 SEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK 168

[Close]
BLAST of Tan0016755 vs. ExPASy TrEMBL
Match: A0A6J1EVN2 (protein LHCP TRANSLOCATION DEFECT OS=Cucurbita moschata OX=3662 GN=LOC111438495 PE=4 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 9.8e-81
Identity = 154/168 (91.67%), Postives = 159/168 (94.64%), Query Frame = 0 

Query: 1   MASISCT-TSINLTPRSFNSRPPLKLGSQFLGFQSKLRWVSPIAIGPSNGSRATCWFNFR 60
           MAS+SCT TSINL+P S NSRPPLKLGSQFLG QS LRWVSPIAIGPSNGSRATCWFN R
Sbjct: 1   MASVSCTSTSINLSPTSLNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLR 60

Query: 61  QNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120
           QNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA
Sbjct: 61  QNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120

Query: 121 SEGDKPKLEELLRAGANYDVKDVDGRTAVDRAANEEIKDFILNFSVQK 168
           SEGDKPKLEELLRAGA YDVKDVDGRTA+DRA N+EIKDFILNFSV+K
Sbjct: 121 SEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK 168

[Close]
BLAST of Tan0016755 vs. TAIR 10
Match: AT1G50900.1 (Ankyrin repeat family protein )

HSP 1 Score: 221.1 bits (562), Expect = 6.8e-58
Identity = 112/169 (66.27%), Postives = 132/169 (78.11%), Query Frame = 0 

Query: 3   SISCTTSINLTPRSFNSRPPLKLGSQFLGFQSKLRWVSPIAIGPSNGSRATCWFNFRQN- 62
           S SC  S+  +  S  S  P  L S+FLG ++    + P  +GPSNGSR TCWF F +N 
Sbjct: 7   SFSCAPSLATSLFSTTSSSPRLLSSRFLGTRNLKLRIRPARLGPSNGSRTTCWFKFGKNG 66

Query: 63  --AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 122
             AE AGIYGSQSRDDF+RDDVEQYFNYMGMLAVEGTY KMEALL+ +IHPVDILLMLAA
Sbjct: 67  VDAENAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYSKMEALLNLNIHPVDILLMLAA 126

Query: 123 SEGDKPKLEELLRAGANYDVKDVDGRTAVDRAANEEIKDFILNFSVQKA 169
           +EGD+PK+EELL+AGA+Y VKD DGRTA+DRA +EEI+D IL +S QKA
Sbjct: 127 TEGDRPKIEELLKAGADYSVKDADGRTAIDRANSEEIRDLILGYSTQKA 175

The following BLAST results are available for this feature:
BLAST of Tan0016755 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8VY889.5e-5766.27Protein LHCP TRANSLOCATION DEFECT OS=Arabidopsis thaliana OX=3702 GN=LTD PE=1 SV... [more]
A2YLX71.6e-4861.71Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. indica OX=39946 GN=LTD ... [more]
A3BKF21.6e-4861.71Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. japonica OX=39947 GN=LT... [more]
BLAST of Tan0016755 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004152919.17.5e-8391.67protein LHCP TRANSLOCATION DEFECT [Cucumis sativus] >KGN56143.1 hypothetical pro... [more]
XP_038903413.11.7e-8291.67protein LHCP TRANSLOCATION DEFECT [Benincasa hispida][more]
XP_008463435.11.4e-8190.48PREDICTED: protein LHCP TRANSLOCATION DEFECT [Cucumis melo] >KAA0033947.1 protei... [more]
XP_022985270.14.1e-8192.26protein LHCP TRANSLOCATION DEFECT [Cucurbita maxima][more]
XP_022932181.12.0e-8091.67protein LHCP TRANSLOCATION DEFECT [Cucurbita moschata][more]
BLAST of Tan0016755 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3093.6e-8391.67ANK_REP_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G078... [more]
A0A5D3BT076.8e-8290.48Protein LHCP TRANSLOCATION DEFECT OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A1S3CJ756.8e-8290.48protein LHCP TRANSLOCATION DEFECT OS=Cucumis melo OX=3656 GN=LOC103501599 PE=4 S... [more]
A0A6J1JAV92.0e-8192.26protein LHCP TRANSLOCATION DEFECT OS=Cucurbita maxima OX=3661 GN=LOC111483311 PE... [more]
A0A6J1EVN29.8e-8191.67protein LHCP TRANSLOCATION DEFECT OS=Cucurbita moschata OX=3662 GN=LOC111438495 ... [more]
BLAST of Tan0016755 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G50900.16.8e-5866.27Ankyrin repeat family protein [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036770Ankyrin repeat-containing domain superfamilyGENE3D1.25.40.20coord: 90..167
e-value: 3.5E-7
score: 32.0
IPR036770Ankyrin repeat-containing domain superfamilySUPERFAMILY48403Ankyrin repeatcoord: 90..160
IPR044242Protein LHCP TRANSLOCATION DEFECT-likePANTHERPTHR47317PROTEIN LHCP TRANSLOCATION DEFECTcoord: 1..168

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0016755.1Tan0016755.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090391 granum assembly
biological_process GO:0006886 intracellular protein transport
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009570 chloroplast stroma