Tan0016348 (gene) Snake gourd v1

Overview


Name	Tan0016348
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	ubiquinol-cytochrome c reductase complex 6.7 kDa protein
Location	LG04: 17274510 .. 17274823 (+)
RNA-Seq Expression	Tan0016348
Synteny	Tan0016348

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGACAGGTGAAGAGGGATTTTTGAAGTTCGTCAGCCCAAAGCTCCGGAACCTCCTGCATCCCACCAACATCGAAGCTGCTGTGTTATGGAGTGTTGCAGGGACGGCCACTGCTCTTTGGCTTATACAGGTACCTCACCGAACTCTTCTCATCAACCAGTATGCCTCTATTTGTACTTCTAATGGTATTAGTGAAAGACCATAAATGCTTTTCTTCTCTGTTTGAAACTGAAAAACTTGCAGCCATTTGACTGGTTGAAGAGGAAAGCTTGGGAGGGGGAGAAAGTAGAAGAGGTCCAAAGTGATGAATAA

mRNA sequence

ATGATGACAGGTGAAGAGGGATTTTTGAAGTTCGTCAGCCCAAAGCTCCGGAACCTCCTGCATCCCACCAACATCGAAGCTGCTGTGTTATGGAGTGTTGCAGGGACGGCCACTGCTCTTTGGCTTATACAGCCATTTGACTGGTTGAAGAGGAAAGCTTGGGAGGGGGAGAAAGTAGAAGAGGTCCAAAGTGATGAATAA

Coding sequence (CDS)

ATGATGACAGGTGAAGAGGGATTTTTGAAGTTCGTCAGCCCAAAGCTCCGGAACCTCCTGCATCCCACCAACATCGAAGCTGCTGTGTTATGGAGTGTTGCAGGGACGGCCACTGCTCTTTGGCTTATACAGCCATTTGACTGGTTGAAGAGGAAAGCTTGGGAGGGGGAGAAAGTAGAAGAGGTCCAAAGTGATGAATAA

Protein sequence

MMTGEEGFLKFVSPKLRNLLHPTNIEAAVLWSVAGTATALWLIQPFDWLKRKAWEGEKVEEVQSDE

Homology

[Close]

BLAST of Tan0016348 vs. ExPASy Swiss-Prot
Match: Q94K78 (Cytochrome b-c1 complex subunit 10, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=UCRY PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.5e-05
Identity = 22/60 (36.67%), Postives = 34/60 (56.67%), Query Frame = 0


Query: 2  MTGEEGFLKFVSPKLRNLLHPTNIEAAVLWSVAGTATALWLIQPFDWLKRKAWEGEKVEE 61
          M G  G L  V PK++ +    +I+AA  W +A  A A+W++QPF W+K+   +    EE
Sbjct: 1  MAGTSGLLNAVKPKIQTI----DIQAAAGWGIAAAAGAIWVVQPFGWIKKTFIDPPPTEE 56

[Close]

BLAST of Tan0016348 vs. ExPASy Swiss-Prot
Match: P48505 (Ubiquinol-cytochrome c reductase complex 6.7 kDa protein OS=Solanum tuberosum OX=4113 PE=1 SV=2)

HSP 1 Score: 48.1 bits (113), Expect = 4.4e-05
Identity = 24/55 (43.64%), Postives = 35/55 (63.64%), Query Frame = 0


Query: 7  GFLKFVSPKLRNLLHPTNIEAAVLWSVAGTATALWLIQPFDWLKRKAWEGEKVEE 62
          G  KF+ PKLR     T+I+AA  W VA    ALW+IQP+D+L++   E ++ E+
Sbjct: 10 GLFKFLRPKLRP--QSTDIQAAAGWGVAAVTGALWVIQPWDFLRKTFIEKQEEEK 62

[Close]

BLAST of Tan0016348 vs. NCBI nr
Match: KAG7031504.1 (hypothetical protein SDJN02_05544, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 111.3 bits (277), Expect = 3.2e-21
Identity = 54/68 (79.41%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1  MMTGEEGFLKFVSPKLRNLLHPTNIEAAVLWSVAGTATALWLIQPFDWLKRKAWEGEKVE 60
          MMTGE+G LKF SPKLRN LHP NIEAAVLWSVAGTATALWL+QPFDWLK+K WE E+  
Sbjct: 16 MMTGEKGLLKFFSPKLRNRLHPINIEAAVLWSVAGTATALWLVQPFDWLKKKIWEVEEKA 75

Query: 61 E--VQSDE 67
          E  VQSDE
Sbjct: 76 EDKVQSDE 83

[Close]

BLAST of Tan0016348 vs. NCBI nr
Match: KAG6600869.1 (hypothetical protein SDJN03_06102, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 111.3 bits (277), Expect = 3.2e-21
Identity = 54/68 (79.41%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1  MMTGEEGFLKFVSPKLRNLLHPTNIEAAVLWSVAGTATALWLIQPFDWLKRKAWEGEKVE 60
          MMTGE+G LKF SPKLRN LHP NIEAAVLWSVAGTATALWL+QPFDWLK+K WE E+  
Sbjct: 1  MMTGEKGLLKFFSPKLRNRLHPINIEAAVLWSVAGTATALWLVQPFDWLKKKIWEVEEKA 60

Query: 61 E--VQSDE 67
          E  VQSDE
Sbjct: 61 EDKVQSDE 68

[Close]

BLAST of Tan0016348 vs. NCBI nr
Match: XP_022988689.1 (ubiquinol-cytochrome c reductase complex 6.7 kDa protein [Cucurbita maxima])

HSP 1 Score: 109.8 bits (273), Expect = 9.3e-21
Identity = 52/68 (76.47%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 1  MMTGEEGFLKFVSPKLRNLLHPTNIEAAVLWSVAGTATALWLIQPFDWLKRKAW--EGEK 60
          MMTGE+G LKF+SPKLRN LHP NIEAAVLWSVAGTATALWL+QPFDWLK+K W  E + 
Sbjct: 16 MMTGEKGLLKFLSPKLRNRLHPINIEAAVLWSVAGTATALWLVQPFDWLKKKIWGVEEKT 75

Query: 61 VEEVQSDE 67
           ++VQSDE
Sbjct: 76 EDKVQSDE 83

[Close]

BLAST of Tan0016348 vs. NCBI nr
Match: KGN50751.1 (hypothetical protein Csa_005826 [Cucumis sativus])

HSP 1 Score: 99.8 bits (247), Expect = 9.6e-18
Identity = 47/68 (69.12%), Postives = 55/68 (80.88%), Query Frame = 0


Query: 1  MMTGEEGFLKFVSPKLRNLLHPTNIEAAVLWSVAGTATALWLIQPFDWLKRKAWEGEKVE 60
          M TGE+G LKF+ PKLRN+LHP NIEAA LWSVAG ATALWL+QPFDWLK+K W  E+  
Sbjct: 1  MKTGEKGLLKFLHPKLRNVLHPINIEAAALWSVAGIATALWLVQPFDWLKKKVWAVEEKG 60

Query: 61 E--VQSDE 67
          E  VQ++E
Sbjct: 61 ESGVQTNE 68

[Close]

BLAST of Tan0016348 vs. NCBI nr
Match: KAA0067023.1 (hypothetical protein E6C27_scaffold38G00590 [Cucumis melo var. makuwa] >TYK26259.1 hypothetical protein E5676_scaffold14G00230 [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 2.3e-11
Identity = 47/105 (44.76%), Postives = 54/105 (51.43%), Query Frame = 0


Query: 1   MMTGEEGFLKFVSPKLRNLLHPTNIEAAVLWSVAGTATALWLI----------------- 60
           M TGE+G LKF+ PKLRNLLHP NIEA  LWSVAGTATA  L                  
Sbjct: 1   MKTGEKGLLKFLHPKLRNLLHPINIEAVALWSVAGTATAFGLYRYSSLASPTLFFSSTSM 60

Query: 61  --------------------QPFDWLKRKAWEGEKVE--EVQSDE 67
                               QPFDWLK+K W+ E+ E  EVQ++E
Sbjct: 61  FLFVVKNRNYSYRLETEKTWQPFDWLKKKVWKVEEKEENEVQTNE 105

[Close]

BLAST of Tan0016348 vs. ExPASy TrEMBL
Match: A0A6J1JMA0 (ubiquinol-cytochrome c reductase complex 6.7 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111485942 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 4.5e-21
Identity = 52/68 (76.47%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 1  MMTGEEGFLKFVSPKLRNLLHPTNIEAAVLWSVAGTATALWLIQPFDWLKRKAW--EGEK 60
          MMTGE+G LKF+SPKLRN LHP NIEAAVLWSVAGTATALWL+QPFDWLK+K W  E + 
Sbjct: 16 MMTGEKGLLKFLSPKLRNRLHPINIEAAVLWSVAGTATALWLVQPFDWLKKKIWGVEEKT 75

Query: 61 VEEVQSDE 67
           ++VQSDE
Sbjct: 76 EDKVQSDE 83

[Close]

BLAST of Tan0016348 vs. ExPASy TrEMBL
Match: A0A0A0KSL8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G223090 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.7e-18
Identity = 47/68 (69.12%), Postives = 55/68 (80.88%), Query Frame = 0


Query: 1  MMTGEEGFLKFVSPKLRNLLHPTNIEAAVLWSVAGTATALWLIQPFDWLKRKAWEGEKVE 60
          M TGE+G LKF+ PKLRN+LHP NIEAA LWSVAG ATALWL+QPFDWLK+K W  E+  
Sbjct: 1  MKTGEKGLLKFLHPKLRNVLHPINIEAAALWSVAGIATALWLVQPFDWLKKKVWAVEEKG 60

Query: 61 E--VQSDE 67
          E  VQ++E
Sbjct: 61 ESGVQTNE 68

[Close]

BLAST of Tan0016348 vs. ExPASy TrEMBL
Match: A0A5A7VG06 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14G00230 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.1e-11
Identity = 47/105 (44.76%), Postives = 54/105 (51.43%), Query Frame = 0


Query: 1   MMTGEEGFLKFVSPKLRNLLHPTNIEAAVLWSVAGTATALWLI----------------- 60
           M TGE+G LKF+ PKLRNLLHP NIEA  LWSVAGTATA  L                  
Sbjct: 1   MKTGEKGLLKFLHPKLRNLLHPINIEAVALWSVAGTATAFGLYRYSSLASPTLFFSSTSM 60

Query: 61  --------------------QPFDWLKRKAWEGEKVE--EVQSDE 67
                               QPFDWLK+K W+ E+ E  EVQ++E
Sbjct: 61  FLFVVKNRNYSYRLETEKTWQPFDWLKKKVWKVEEKEENEVQTNE 105

[Close]

BLAST of Tan0016348 vs. ExPASy TrEMBL
Match: A0A5D2MEA8 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A13G009000v1 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.6e-08
Identity = 32/59 (54.24%), Postives = 38/59 (64.41%), Query Frame = 0


Query: 2  MTGEEGFLKFVSPKLRNLLHPTNIEAAVLWSVAGTATALWLIQPFDWLKRKAWEGEKVE 61
          M GE    KF+ P+LR   HP +I+AA  W VA + TALWLIQPFDWLKR   E  + E
Sbjct: 1  MAGEGSMFKFLKPRLRP--HPIDIQAAAAWGVAASTTALWLIQPFDWLKRTFLEKPESE 57

[Close]

BLAST of Tan0016348 vs. ExPASy TrEMBL
Match: A0A5J5SX07 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A13G008100v1 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.6e-08
Identity = 32/59 (54.24%), Postives = 38/59 (64.41%), Query Frame = 0


Query: 2  MTGEEGFLKFVSPKLRNLLHPTNIEAAVLWSVAGTATALWLIQPFDWLKRKAWEGEKVE 61
          M GE    KF+ P+LR   HP +I+AA  W VA + TALWLIQPFDWLKR   E  + E
Sbjct: 1  MAGEGSMFKFLKPRLRP--HPIDIQAAAAWGVAASTTALWLIQPFDWLKRTFLEKPESE 57

[Close]

BLAST of Tan0016348 vs. TAIR 10
Match: AT2G40765.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, mitochondrial respiratory chain complex III; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 32 Blast hits to 32 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 49.7 bits (117), Expect = 1.1e-06
Identity = 22/60 (36.67%), Postives = 34/60 (56.67%), Query Frame = 0


Query: 2  MTGEEGFLKFVSPKLRNLLHPTNIEAAVLWSVAGTATALWLIQPFDWLKRKAWEGEKVEE 61
          M G  G L  V PK++ +    +I+AA  W +A  A A+W++QPF W+K+   +    EE
Sbjct: 1  MAGTSGLLNAVKPKIQTI----DIQAAAGWGIAAAAGAIWVVQPFGWIKKTFIDPPPTEE 56

The following BLAST results are available for this feature:

BLAST of Tan0016348 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94K78	1.5e-05	36.67	Cytochrome b-c1 complex subunit 10, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
P48505	4.4e-05	43.64	Ubiquinol-cytochrome c reductase complex 6.7 kDa protein OS=Solanum tuberosum OX...	[more]

BLAST of Tan0016348 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7031504.1	3.2e-21	79.41	hypothetical protein SDJN02_05544, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6600869.1	3.2e-21	79.41	hypothetical protein SDJN03_06102, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022988689.1	9.3e-21	76.47	ubiquinol-cytochrome c reductase complex 6.7 kDa protein [Cucurbita maxima]	[more]
KGN50751.1	9.6e-18	69.12	hypothetical protein Csa_005826 [Cucumis sativus]	[more]
KAA0067023.1	2.3e-11	44.76	hypothetical protein E6C27_scaffold38G00590 [Cucumis melo var. makuwa] >TYK26259...	[more]

BLAST of Tan0016348 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JMA0	4.5e-21	76.47	ubiquinol-cytochrome c reductase complex 6.7 kDa protein OS=Cucurbita maxima OX=...	[more]
A0A0A0KSL8	4.7e-18	69.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G223090 PE=4 SV=1	[more]
A0A5A7VG06	1.1e-11	44.76	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D2MEA8	2.6e-08	54.24	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A13G009000v1 P...	[more]
A0A5J5SX07	2.6e-08	54.24	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A13G008100v1 PE...	[more]

BLAST of Tan0016348 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G40765.1	1.1e-06	36.67	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0016348.1	Tan0016348.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane