Tan0016307 (gene) Snake gourd v1

Overview


Name	Tan0016307
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Location	LG07: 51007842 .. 51008345 (-)
RNA-Seq Expression	Tan0016307
Synteny	Tan0016307

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCTCAGCTCGTGAGATCATGGACTATCTGCAAAATTTGTCTAGACAACCGTCTGAACAAATTCGGCACGAATCCATCAAATATGTTTATAACGCGCGCATGAAGGAGGGAACTTCAGTGAGAGAACATGTTCTCGATCTTATAGTTCACTTCAACGTGGTCGAAATGAACGAAGCGATCATAGATGAGCAAATTCAGGTATTCTTCATCCTAGAATCTCCTCCGAAGAGTTTCCTGCCATTCCGTAGAAATGCGGAGTTGAACAAAAAGGAGTGTAACCTGACTTCCCTCCTAAATGAACTACAAACTTTCGAGTCTCTTATTAAGAATAAGGGGCAGGCTATGGAGAGGGAAATTCGTTTGCCCATTCCAAAAGGTTCCAGAAGGGTTCATCCTCTGGGACTAAGCCCTGTGGTTCAACTTGGAAGAAGAGGAAAGGAGGAAAAGGGAAAGCTTCTGCCACTGCATATATTGAGCTCAAAGAGAAGAATGGTAAATTAG

mRNA sequence

ATGGTCTCAGCTCGTGAGATCATGGACTATCTGCAAAATTTGTCTAGACAACCGTCTGAACAAATTCGGCACGAATCCATCAAATATGTTTATAACGCGCGCATGAAGGAGGGAACTTCAGTGAGAGAACATGTTCTCGATCTTATAGTTCACTTCAACGTGGTCGAAATGAACGAAGCGATCATAGATGAGCAAATTCAGGTATTCTTCATCCTAGAATCTCCTCCGAAGAGTTTCCTGCCATTCCGTAGAAATGCGGAGTTGAACAAAAAGGAGTGTAACCTGACTTCCCTCCTAAATGAACTACAAACTTTCGAGTCTCTTATTAAGAATAAGGGGCAGGCTATGGAGAGGGAAATTCGTTTGCCCATTCCAAAAGGTTCCAGAAGGGTTCATCCTCTGGGACTAAGCCCTGTGGTTCAACTTGGAAGAAGAGGAAAGGAGGAAAAGGGAAAGCTTCTGCCACTGCATATATTGAGCTCAAAGAGAAGAATGGTAAATTAG

Coding sequence (CDS)

ATGGTCTCAGCTCGTGAGATCATGGACTATCTGCAAAATTTGTCTAGACAACCGTCTGAACAAATTCGGCACGAATCCATCAAATATGTTTATAACGCGCGCATGAAGGAGGGAACTTCAGTGAGAGAACATGTTCTCGATCTTATAGTTCACTTCAACGTGGTCGAAATGAACGAAGCGATCATAGATGAGCAAATTCAGGTATTCTTCATCCTAGAATCTCCTCCGAAGAGTTTCCTGCCATTCCGTAGAAATGCGGAGTTGAACAAAAAGGAGTGTAACCTGACTTCCCTCCTAAATGAACTACAAACTTTCGAGTCTCTTATTAAGAATAAGGGGCAGGCTATGGAGAGGGAAATTCGTTTGCCCATTCCAAAAGGTTCCAGAAGGGTTCATCCTCTGGGACTAAGCCCTGTGGTTCAACTTGGAAGAAGAGGAAAGGAGGAAAAGGGAAAGCTTCTGCCACTGCATATATTGAGCTCAAAGAGAAGAATGGTAAATTAG

Protein sequence

MVSAREIMDYLQNLSRQPSEQIRHESIKYVYNARMKEGTSVREHVLDLIVHFNVVEMNEAIIDEQIQVFFILESPPKSFLPFRRNAELNKKECNLTSLLNELQTFESLIKNKGQAMEREIRLPIPKGSRRVHPLGLSPVVQLGRRGKEEKGKLLPLHILSSKRRMVN

Homology

[Close]

BLAST of Tan0016307 vs. NCBI nr
Match: KAA0054432.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK14604.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 147.9 bits (372), Expect = 7.8e-32
Identity = 78/120 (65.00%), Postives = 94/120 (78.33%), Query Frame = 0


Query: 1   MVSAREIMDYLQNLSRQPSEQIRHESIKYVYNARMKEGTSVREHVLDLIVHFNVVEMNEA 60
           M++AREIMD LQ +  Q S QI+H+++KY+YNARM EG SVREHVL+++VHFNVVEMN A
Sbjct: 88  MLTAREIMDSLQEMFSQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVVEMNGA 147

Query: 61  IIDEQIQVFFILESPPKSFLPFRRNAELNKKECNLTSLLNELQTFESLIKNKGQAMEREI 120
           +IDE  QV FILES P+SFL FR NA +NK    LT LLNELQTFESL+K KGQ  E  +
Sbjct: 148 VIDEASQVSFILESLPESFLQFRNNAVMNKIAYTLTILLNELQTFESLMKIKGQKGEANV 207

[Close]

BLAST of Tan0016307 vs. NCBI nr
Match: KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 146.7 bits (369), Expect = 1.7e-31
Identity = 77/120 (64.17%), Postives = 94/120 (78.33%), Query Frame = 0


Query: 1   MVSAREIMDYLQNLSRQPSEQIRHESIKYVYNARMKEGTSVREHVLDLIVHFNVVEMNEA 60
           M++AREIMD LQ +  Q S QI+H+++KY+YNARM EG SVREHVL+++VHFNV EMN A
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  IIDEQIQVFFILESPPKSFLPFRRNAELNKKECNLTSLLNELQTFESLIKNKGQAMEREI 120
           +IDE  QV FILES P+SFL FR NA +NK    LT+LLNELQTFESL+K KGQ  E  +
Sbjct: 148 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANV 207

[Close]

BLAST of Tan0016307 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 146.7 bits (369), Expect = 1.7e-31
Identity = 77/120 (64.17%), Postives = 94/120 (78.33%), Query Frame = 0


Query: 1   MVSAREIMDYLQNLSRQPSEQIRHESIKYVYNARMKEGTSVREHVLDLIVHFNVVEMNEA 60
           M++AREIMD LQ +  Q S QI+H+++KY+YNARM EG SVREHVL+++VHFNV EMN A
Sbjct: 87  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 146

Query: 61  IIDEQIQVFFILESPPKSFLPFRRNAELNKKECNLTSLLNELQTFESLIKNKGQAMEREI 120
           +IDE  QV FILES P+SFL FR NA +NK    LT+LLNELQTFESL+K KGQ  E  +
Sbjct: 147 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANV 206

[Close]

BLAST of Tan0016307 vs. NCBI nr
Match: TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 146.7 bits (369), Expect = 1.7e-31
Identity = 77/120 (64.17%), Postives = 94/120 (78.33%), Query Frame = 0


Query: 1   MVSAREIMDYLQNLSRQPSEQIRHESIKYVYNARMKEGTSVREHVLDLIVHFNVVEMNEA 60
           M++AREIMD LQ +  Q S QI+H+++KY+YNARM EG SVREHVL+++VHFNV EMN A
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  IIDEQIQVFFILESPPKSFLPFRRNAELNKKECNLTSLLNELQTFESLIKNKGQAMEREI 120
           +IDE  QV FILES P+SFL FR NA +NK    LT+LLNELQTFESL+K KGQ  E  +
Sbjct: 148 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANV 207

[Close]

BLAST of Tan0016307 vs. NCBI nr
Match: KAA0054490.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 146.7 bits (369), Expect = 1.7e-31
Identity = 77/120 (64.17%), Postives = 94/120 (78.33%), Query Frame = 0


Query: 1   MVSAREIMDYLQNLSRQPSEQIRHESIKYVYNARMKEGTSVREHVLDLIVHFNVVEMNEA 60
           M++AREIMD LQ +  Q S QI+H+++KY+YNARM EG SVREHVL+++VHFNV EMN A
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  IIDEQIQVFFILESPPKSFLPFRRNAELNKKECNLTSLLNELQTFESLIKNKGQAMEREI 120
           +IDE  QV FILES P+SFL FR NA +NK    LT+LLNELQTFESL+K KGQ  E  +
Sbjct: 148 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANV 207

[Close]

BLAST of Tan0016307 vs. ExPASy TrEMBL
Match: A0A5A7UF91 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G001130 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 3.8e-32
Identity = 78/120 (65.00%), Postives = 94/120 (78.33%), Query Frame = 0


Query: 1   MVSAREIMDYLQNLSRQPSEQIRHESIKYVYNARMKEGTSVREHVLDLIVHFNVVEMNEA 60
           M++AREIMD LQ +  Q S QI+H+++KY+YNARM EG SVREHVL+++VHFNVVEMN A
Sbjct: 88  MLTAREIMDSLQEMFSQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVVEMNGA 147

Query: 61  IIDEQIQVFFILESPPKSFLPFRRNAELNKKECNLTSLLNELQTFESLIKNKGQAMEREI 120
           +IDE  QV FILES P+SFL FR NA +NK    LT LLNELQTFESL+K KGQ  E  +
Sbjct: 148 VIDEASQVSFILESLPESFLQFRNNAVMNKIAYTLTILLNELQTFESLMKIKGQKGEANV 207

[Close]

BLAST of Tan0016307 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 8.4e-32
Identity = 77/120 (64.17%), Postives = 94/120 (78.33%), Query Frame = 0


Query: 1   MVSAREIMDYLQNLSRQPSEQIRHESIKYVYNARMKEGTSVREHVLDLIVHFNVVEMNEA 60
           M++AREIMD LQ +  Q S QI+H+++KY+YNARM EG SVREHVL+++VHFNV EMN A
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  IIDEQIQVFFILESPPKSFLPFRRNAELNKKECNLTSLLNELQTFESLIKNKGQAMEREI 120
           +IDE  QV FILES P+SFL FR NA +NK    LT+LLNELQTFESL+K KGQ  E  +
Sbjct: 148 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANV 207

[Close]

BLAST of Tan0016307 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 8.4e-32
Identity = 77/120 (64.17%), Postives = 94/120 (78.33%), Query Frame = 0


Query: 1   MVSAREIMDYLQNLSRQPSEQIRHESIKYVYNARMKEGTSVREHVLDLIVHFNVVEMNEA 60
           M++AREIMD LQ +  Q S QI+H+++KY+YNARM EG SVREHVL+++VHFNV EMN A
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  IIDEQIQVFFILESPPKSFLPFRRNAELNKKECNLTSLLNELQTFESLIKNKGQAMEREI 120
           +IDE  QV FILES P+SFL FR NA +NK    LT+LLNELQTFESL+K KGQ  E  +
Sbjct: 148 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANV 207

[Close]

BLAST of Tan0016307 vs. ExPASy TrEMBL
Match: A0A5A7V4M1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00930 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 8.4e-32
Identity = 77/120 (64.17%), Postives = 94/120 (78.33%), Query Frame = 0


Query: 1   MVSAREIMDYLQNLSRQPSEQIRHESIKYVYNARMKEGTSVREHVLDLIVHFNVVEMNEA 60
           M++AREIMD LQ +  Q S QI+H+++KY+YNARM EG SVREHVL+++VHFNV EMN A
Sbjct: 205 MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 264

Query: 61  IIDEQIQVFFILESPPKSFLPFRRNAELNKKECNLTSLLNELQTFESLIKNKGQAMEREI 120
           +IDE  QV FILES P+SFL FR NA +NK    LT+LLNELQTFESL+K KGQ  E  +
Sbjct: 265 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANV 324

[Close]

BLAST of Tan0016307 vs. ExPASy TrEMBL
Match: A0A5A7TU93 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002590 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 8.4e-32
Identity = 77/120 (64.17%), Postives = 94/120 (78.33%), Query Frame = 0


Query: 1   MVSAREIMDYLQNLSRQPSEQIRHESIKYVYNARMKEGTSVREHVLDLIVHFNVVEMNEA 60
           M++AREIMD LQ +  Q S QI+H+++KY+YNARM EG SVREHVL+++VHFNV EMN A
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  IIDEQIQVFFILESPPKSFLPFRRNAELNKKECNLTSLLNELQTFESLIKNKGQAMEREI 120
           +IDE  QV FILES P+SFL FR NA +NK    LT+LLNELQTFESL+K KGQ  E  +
Sbjct: 148 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANV 207

The following BLAST results are available for this feature:

BLAST of Tan0016307 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0016307 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0054432.1	7.8e-32	65.00	gag/pol protein [Cucumis melo var. makuwa] >TYK14604.1 gag/pol protein [Cucumis ...	[more]
KAA0044955.1	1.7e-31	64.17	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0048404.1	1.7e-31	64.17	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK14550.1	1.7e-31	64.17	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0054490.1	1.7e-31	64.17	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Tan0016307 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UF91	3.8e-32	65.00	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G0011...	[more]
A0A5A7SMH8	8.4e-32	64.17	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5D3CPJ6	8.4e-32	64.17	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004...	[more]
A0A5A7V4M1	8.4e-32	64.17	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G0093...	[more]
A0A5A7TU93	8.4e-32	64.17	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G00259...	[more]

BLAST of Tan0016307 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 88..108
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 3..106 e-value: 9.3E-9 score: 35.2
None	No IPR available	PANTHER	PTHR35317:SF8	POLYPROTEIN-LIKE PROTEIN	coord: 1..117
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 1..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0016307.1	Tan0016307.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:0005488	binding