Tan0016005 (gene) Snake gourd v1

Overview


Name	Tan0016005
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Translocon-associated protein subunit beta
Location	LG07: 2670514 .. 2673358 (-)
RNA-Seq Expression	Tan0016005
Synteny	Tan0016005

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAATGACTAGATTACCCCTGTTTGAAATTTGTGAGGATCTCAGAAATCATCATATGATCTTTGACTGTTCCACATTTTTGCGTACCTAATTTATCAGACGGCTCCTTCTCAAACTTCCATTTCGTCGACGCCTCTCATCTTCTCCGATCATCTCTCTGGCCCTAATTTTGACGATTTCATGGCGAATCCGATTCAGGCTCCTCTGATCTATGTCCTTTTGGCTTTGCTGTTCGTCTCGTCAACGATCGCAACCTCCGATGTCCCATTCATTGTCGCGCACAAGAAGGCGTCGCTCACTCGCCTCAAATCCGGCACCGAACGCGTCTCTGTCTCCATCGACATTTACAATCAAGGATCTTCGTATGTTCTGTTTAATTCCTTCAATCTGATTTCGCTTTCGGTTTCTAGATTCACCTTTCCTGACCCTGCGGTCTGTGTGTTGTAGATCGAATCGTTCTTTGCGCATGCGTGTTTGGTTCGTTATGTTTTGTTCTGGATCTATATTGGATTTGGTTGTGCGTTGTTTGTTCATTTTTTTTCTCTTCTTCCCTTCTCTCTCTGTGTATGTGATTGTTTTTAAGTAGTCGTTTTCTCGGAGAGAAATGTTAGGTTTAGGCTTCGGGAAGATGTTTTCAAGGATGGAAGATTAGAAGTCTTTGGGTTTTCATTGGCTTTGGTGCATTTGTGTTTTATCAATTGTGGACTAAGTTCGTTATGTCTTGGTTCAATACCAAGATTCTCGAGGCTATTATGAACTGGAACCATGCGTAGCTCCCTTAGCTGCACCAACAAAGTCTGTGTTATGGTTTTCTGTCAGAATATTCCATCAGCGATGATAGTCGTTGCCATTCCAGGAGTTTTGCCTAGATCTCGTGTCACATTACAAATTTGTTCAATAGGGCTGCGACCTTTTTGCATGCAACAAGAAGAAATAAGCTGCTCCTTGGATTCAATTTTTTGTCAAATTTTTACAATTTGATGTAGATTTATTTGTTTATGATCGGTAGCCGTGGGTGTGAGGAGGGGGTGTGCGTGTGTGTGTGTTGAGCACTAACTGAAAAGTAGAAATTGTCTAAATCAAAGTAGCCCAAGTATCTATTTGACCTAAATGAAGAAAATAATGAGAAGCTTGGAAGGGGATTCACGAGATATTCTTTTGACATGTTTACTTGGGCTTCTGTTTTAAGATTAAGGAGAGAGTTTATTAGGATTAGGAACTAAGGAAGGGAGGAGTTGCCTGATTTTACATATCTTTTTCTTTCTTTTTATAGTAAATCTCATTGAGTTTACTATTTCCTATCCTGTTGTGTTTGTTGGCCTTTGTACTGTTCAAGCAGATTACAGTGCAATTTTATCTTTTCAACTTTTTATACAAACCTTAGTTTTTCATTTTTAAGTTGCTTAACTCCCTTTCCTTTTGTCTATTTCATTTCTATGTGGCCTGGTTTCTTATTTTTTCCCCTCTTTTTTGTATTACAGGACCACGTATGATGTAAGTCTGAACGATGCAAGCTGGCCTGCAGATGTCTTTGATATCATCAGTGGTGAAACTTCCAAATCGTGGGAAAGACTTGATGCGTAAGCGGCACCATTTGTTTAGTATTCTTTCCTATATGATACACGCTATTTGGTTTTTGTGTCCCACTAATACAAATCTGCTGTTTGACAGTGGTGGTCATCTATCTCATTCTTTTGAGTTGGAAGCAAAAACAAAAGGAATGTTTCATGGTTCACCTGCTGTTGTCACATTCCGTGTCCCTACAAAGTCCGCTTTACAGGTCAATTATCCTATCAGTGATGGTATTATATTATGCTGTGATTACTTAAAAGTTGCAGACGTTTTACCATTTATCTGGATATCTGTAGGAGGCCTTGTCAACCCCAATACTGCCTTTGGATGTCCTGGCTGACAGGCCACCAGAGAAGAAGTTTGAGTGGGTAAGTTTATGTAAACATTTTCTTTTTCCACTTCAAGGTTAATGATTTAAGCCTTACCAATTTGGTTAACTGGAGCAATCTTTTGCTTTTGCATGGAATTTCTCTTTCAATGGGGCGTAAATTCGACAGGTTAAGGTATGATCCATTCCGCGTTCTTAATTCTTCTGTTAATAATATCTGTCCATTCTCCCCTTCAAATCCATCCCCACACCGGAAAGTGTTGTGCCTGCTGCATTGACTTTTGACTACCGTCTTTTTATTCACACGAGTTCTTCTCCTCTCTGCAGAGGCTGCTTGCAAAGTATGGCTCCCTGATCTCAGTGGTCTCTATCATCGTTCTGTTCATCTTTCTCGTCGCCAGTCCATCGAAATCTGCTGCAAAAGGAAGCAAGAAGAAGCGTTAATTTAAGATTGGGAGATAATTCGAAAAGTAGGTTTTAACTGTGTTTTACTTTTGATCCCCCACCCAAAATTTGAGGATGTTTCCGTGATATATTTTGTTGGGTTAGCAAAGGTACAGAAAAAACTTTTTGAATTGATAGTTTTTTTGTTCTCACCCCCTAATGAAGTAGAGCCGGAGGAAACAGGAGTTAATGATAGGCATGCACAAGAGTCAGTCAAACACATGGTCCAGTAGTTGAGTTGTTGCTTTTTTAAGTAAGTTAATGTCGGATTTGTTCATCATATTACTGAGTTGTTTCTTCTCTGTTTAGCCATAAATCTTTGCCTTCTTCCTTCTCCAATACACAGATGATTAGAAAATGGACAGGATCCTAAACCAAGTTTGGTGTTTAAAGTTCTTAATTTTGTTGTTGTTTTTTTTAATGAGATTTTGGTTTAAATTCTGTTTAGTACGTGAATCCTCAGATAGTTTCTATTTTTACACTAACGTAGAGTTTGTTTTGG

mRNA sequence

AAAATGACTAGATTACCCCTGTTTGAAATTTGTGAGGATCTCAGAAATCATCATATGATCTTTGACTGTTCCACATTTTTGCGTACCTAATTTATCAGACGGCTCCTTCTCAAACTTCCATTTCGTCGACGCCTCTCATCTTCTCCGATCATCTCTCTGGCCCTAATTTTGACGATTTCATGGCGAATCCGATTCAGGCTCCTCTGATCTATGTCCTTTTGGCTTTGCTGTTCGTCTCGTCAACGATCGCAACCTCCGATGTCCCATTCATTGTCGCGCACAAGAAGGCGTCGCTCACTCGCCTCAAATCCGGCACCGAACGCGTCTCTGTCTCCATCGACATTTACAATCAAGGATCTTCGACCACGTATGATGTAAGTCTGAACGATGCAAGCTGGCCTGCAGATGTCTTTGATATCATCAGTGGTGAAACTTCCAAATCGTGGGAAAGACTTGATGCTGGTGGTCATCTATCTCATTCTTTTGAGTTGGAAGCAAAAACAAAAGGAATGTTTCATGGTTCACCTGCTGTTGTCACATTCCGTGTCCCTACAAAGTCCGCTTTACAGGAGGCCTTGTCAACCCCAATACTGCCTTTGGATGTCCTGGCTGACAGGCCACCAGAGAAGAAGTTTGAGTGGGTTAAGAGGCTGCTTGCAAAGTATGGCTCCCTGATCTCAGTGGTCTCTATCATCGTTCTGTTCATCTTTCTCGTCGCCAGTCCATCGAAATCTGCTGCAAAAGGAAGCAAGAAGAAGCGTTAATTTAAGATTGGGAGATAATTCGAAAAGTAGGTTTTAACTGTGTTTTACTTTTGATCCCCCACCCAAAATTTGAGGATGTTTCCGTGATATATTTTGTTGGGTTAGCAAAGGTACAGAAAAAACTTTTTGAATTGATAGTTTTTTTGTTCTCACCCCCTAATGAAGTAGAGCCGGAGGAAACAGGAGTTAATGATAGGCATGCACAAGAGTCAGTCAAACACATGGTCCAGTAGTTGAGTTGTTGCTTTTTTAAGTAAGTTAATGTCGGATTTGTTCATCATATTACTGAGTTGTTTCTTCTCTGTTTAGCCATAAATCTTTGCCTTCTTCCTTCTCCAATACACAGATGATTAGAAAATGGACAGGATCCTAAACCAAGTTTGGTGTTTAAAGTTCTTAATTTTGTTGTTGTTTTTTTTAATGAGATTTTGGTTTAAATTCTGTTTAGTACGTGAATCCTCAGATAGTTTCTATTTTTACACTAACGTAGAGTTTGTTTTGG

Coding sequence (CDS)

ATGGCGAATCCGATTCAGGCTCCTCTGATCTATGTCCTTTTGGCTTTGCTGTTCGTCTCGTCAACGATCGCAACCTCCGATGTCCCATTCATTGTCGCGCACAAGAAGGCGTCGCTCACTCGCCTCAAATCCGGCACCGAACGCGTCTCTGTCTCCATCGACATTTACAATCAAGGATCTTCGACCACGTATGATGTAAGTCTGAACGATGCAAGCTGGCCTGCAGATGTCTTTGATATCATCAGTGGTGAAACTTCCAAATCGTGGGAAAGACTTGATGCTGGTGGTCATCTATCTCATTCTTTTGAGTTGGAAGCAAAAACAAAAGGAATGTTTCATGGTTCACCTGCTGTTGTCACATTCCGTGTCCCTACAAAGTCCGCTTTACAGGAGGCCTTGTCAACCCCAATACTGCCTTTGGATGTCCTGGCTGACAGGCCACCAGAGAAGAAGTTTGAGTGGGTTAAGAGGCTGCTTGCAAAGTATGGCTCCCTGATCTCAGTGGTCTCTATCATCGTTCTGTTCATCTTTCTCGTCGCCAGTCCATCGAAATCTGCTGCAAAAGGAAGCAAGAAGAAGCGTTAA

Protein sequence

MANPIQAPLIYVLLALLFVSSTIATSDVPFIVAHKKASLTRLKSGTERVSVSIDIYNQGSSTTYDVSLNDASWPADVFDIISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVTFRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSIIVLFIFLVASPSKSAAKGSKKKR

Homology

[Close]

BLAST of Tan0016005 vs. NCBI nr
Match: XP_022156478.1 (translocon-associated protein subunit beta [Momordica charantia])

HSP 1 Score: 348.6 bits (893), Expect = 3.5e-92
Identity = 181/194 (93.30%), Postives = 187/194 (96.39%), Query Frame = 0


Query: 1   MANPIQAPLIYVLLALLFVSSTIATSDVPFIVAHKKASLTRLKSGTERVSVSIDIYNQGS 60
           MANPIQ+PLI +L ALLFV+STIATSDVPFIVAHKKASLTRLKSG ERVSVSIDIYNQGS
Sbjct: 1   MANPIQSPLIRLLFALLFVASTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 60

Query: 61  STTYDVSLNDASWPADVFDIISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120
           ST YDVSLNDASWP DVFDIISGETSKSWERLDAG HLSHSFELEAKTKGMFHGSPAV+T
Sbjct: 61  STAYDVSLNDASWPVDVFDIISGETSKSWERLDAGAHLSHSFELEAKTKGMFHGSPAVIT 120

Query: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSIIVLFIFLVA 180
           FRVPTKSALQEA STPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSI+VLFI+LVA
Sbjct: 121 FRVPTKSALQEAYSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSIVVLFIYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           SPSKSAAKGSKKKR
Sbjct: 181 SPSKSAAKGSKKKR 194

[Close]

BLAST of Tan0016005 vs. NCBI nr
Match: XP_038894726.1 (translocon-associated protein subunit beta [Benincasa hispida])

HSP 1 Score: 344.7 bits (883), Expect = 5.0e-91
Identity = 174/194 (89.69%), Postives = 188/194 (96.91%), Query Frame = 0


Query: 1   MANPIQAPLIYVLLALLFVSSTIATSDVPFIVAHKKASLTRLKSGTERVSVSIDIYNQGS 60
           MANPIQ PLI++LLALLFVSSTIATSDVPFIVAHKKASLTRLKSG ERVSVSIDIYN+GS
Sbjct: 1   MANPIQPPLIHLLLALLFVSSTIATSDVPFIVAHKKASLTRLKSGVERVSVSIDIYNRGS 60

Query: 61  STTYDVSLNDASWPADVFDIISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120
           ST YD SLNDASWP D+FDI+SGETSKSWERLDAGGH+SHSFELEAKTKG+FHGSPA++T
Sbjct: 61  STAYDASLNDASWPEDMFDIVSGETSKSWERLDAGGHISHSFELEAKTKGLFHGSPAIIT 120

Query: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSIIVLFIFLVA 180
           FRVPTKSALQEALSTPILPLD+LAD+PPEKK EWVKRLLAKYGSLISV+SI+VLFI+LVA
Sbjct: 121 FRVPTKSALQEALSTPILPLDILADKPPEKKLEWVKRLLAKYGSLISVISIVVLFIYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           SPSKSAAKGSKKKR
Sbjct: 181 SPSKSAAKGSKKKR 194

[Close]

BLAST of Tan0016005 vs. NCBI nr
Match: XP_022928574.1 (translocon-associated protein subunit beta-like isoform X1 [Cucurbita moschata] >XP_023529270.1 translocon-associated protein subunit beta-like [Cucurbita pepo subsp. pepo] >KAG6588872.1 Translocon-associated protein subunit beta, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 344.4 bits (882), Expect = 6.6e-91
Identity = 179/194 (92.27%), Postives = 185/194 (95.36%), Query Frame = 0


Query: 1   MANPIQAPLIYVLLALLFVSSTIATSDVPFIVAHKKASLTRLKSGTERVSVSIDIYNQGS 60
           MANP  APL+YVLLALL VSSTIATSDVPFIVAHKKASLTRLKSG ERVSVSIDIYNQGS
Sbjct: 1   MANPTPAPLVYVLLALLLVSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 60

Query: 61  STTYDVSLNDASWPADVFDIISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120
           ST YDVSLNDASWP DVFD+ISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT
Sbjct: 61  STAYDVSLNDASWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120

Query: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSIIVLFIFLVA 180
           FRVPTKSALQEALSTPILPLDVLADR PE KFEWVKRLLAKYGSLISV SI++LFI+LVA
Sbjct: 121 FRVPTKSALQEALSTPILPLDVLADRLPENKFEWVKRLLAKYGSLISVNSIVILFIYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           SPSKS+AKGSKKKR
Sbjct: 181 SPSKSSAKGSKKKR 194

[Close]

BLAST of Tan0016005 vs. NCBI nr
Match: XP_022983434.1 (translocon-associated protein subunit beta isoform X1 [Cucurbita maxima])

HSP 1 Score: 343.2 bits (879), Expect = 1.5e-90
Identity = 177/194 (91.24%), Postives = 188/194 (96.91%), Query Frame = 0


Query: 1   MANPIQAPLIYVLLALLFVSSTIATSDVPFIVAHKKASLTRLKSGTERVSVSIDIYNQGS 60
           MAN IQA LI++LLALLFVSSTIA+SDVPFIVAHKKA+LTRLKSG ERVSVSI+IYNQGS
Sbjct: 1   MANLIQARLIHLLLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGS 60

Query: 61  STTYDVSLNDASWPADVFDIISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120
           ST YDV+LNDASWP DVFDI+SGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAV+T
Sbjct: 61  STAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVIT 120

Query: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSIIVLFIFLVA 180
           FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVS +VLF++LVA
Sbjct: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSFVVLFVYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           SPSKSAAKGSKKKR
Sbjct: 181 SPSKSAAKGSKKKR 194

[Close]

BLAST of Tan0016005 vs. NCBI nr
Match: XP_022935419.1 (translocon-associated protein subunit beta isoform X1 [Cucurbita moschata] >XP_022935420.1 translocon-associated protein subunit beta isoform X2 [Cucurbita moschata])

HSP 1 Score: 341.7 bits (875), Expect = 4.3e-90
Identity = 176/194 (90.72%), Postives = 187/194 (96.39%), Query Frame = 0


Query: 1   MANPIQAPLIYVLLALLFVSSTIATSDVPFIVAHKKASLTRLKSGTERVSVSIDIYNQGS 60
           MAN IQA LI++LLA LFVSSTIA+SDVPFIVAHKKA+LTRLKSG ERVSVSI+IYNQGS
Sbjct: 1   MANLIQARLIHLLLAFLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGS 60

Query: 61  STTYDVSLNDASWPADVFDIISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120
           ST YDV+LNDASWP DVFDI+SGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAV+T
Sbjct: 61  STAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVIT 120

Query: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSIIVLFIFLVA 180
           FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVS +VLF++LVA
Sbjct: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSFVVLFVYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           SPSKSAAKGSKKKR
Sbjct: 181 SPSKSAAKGSKKKR 194

[Close]

BLAST of Tan0016005 vs. ExPASy TrEMBL
Match: A0A6J1DQQ5 (Translocon-associated protein subunit beta OS=Momordica charantia OX=3673 GN=LOC111023364 PE=3 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 1.7e-92
Identity = 181/194 (93.30%), Postives = 187/194 (96.39%), Query Frame = 0


Query: 1   MANPIQAPLIYVLLALLFVSSTIATSDVPFIVAHKKASLTRLKSGTERVSVSIDIYNQGS 60
           MANPIQ+PLI +L ALLFV+STIATSDVPFIVAHKKASLTRLKSG ERVSVSIDIYNQGS
Sbjct: 1   MANPIQSPLIRLLFALLFVASTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 60

Query: 61  STTYDVSLNDASWPADVFDIISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120
           ST YDVSLNDASWP DVFDIISGETSKSWERLDAG HLSHSFELEAKTKGMFHGSPAV+T
Sbjct: 61  STAYDVSLNDASWPVDVFDIISGETSKSWERLDAGAHLSHSFELEAKTKGMFHGSPAVIT 120

Query: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSIIVLFIFLVA 180
           FRVPTKSALQEA STPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSI+VLFI+LVA
Sbjct: 121 FRVPTKSALQEAYSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSIVVLFIYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           SPSKSAAKGSKKKR
Sbjct: 181 SPSKSAAKGSKKKR 194

[Close]

BLAST of Tan0016005 vs. ExPASy TrEMBL
Match: A0A6J1EL83 (Translocon-associated protein subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111435340 PE=3 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 3.2e-91
Identity = 179/194 (92.27%), Postives = 185/194 (95.36%), Query Frame = 0


Query: 1   MANPIQAPLIYVLLALLFVSSTIATSDVPFIVAHKKASLTRLKSGTERVSVSIDIYNQGS 60
           MANP  APL+YVLLALL VSSTIATSDVPFIVAHKKASLTRLKSG ERVSVSIDIYNQGS
Sbjct: 1   MANPTPAPLVYVLLALLLVSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 60

Query: 61  STTYDVSLNDASWPADVFDIISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120
           ST YDVSLNDASWP DVFD+ISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT
Sbjct: 61  STAYDVSLNDASWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120

Query: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSIIVLFIFLVA 180
           FRVPTKSALQEALSTPILPLDVLADR PE KFEWVKRLLAKYGSLISV SI++LFI+LVA
Sbjct: 121 FRVPTKSALQEALSTPILPLDVLADRLPENKFEWVKRLLAKYGSLISVNSIVILFIYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           SPSKS+AKGSKKKR
Sbjct: 181 SPSKSSAKGSKKKR 194

[Close]

BLAST of Tan0016005 vs. ExPASy TrEMBL
Match: A0A6J1J7C6 (Translocon-associated protein subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111482040 PE=3 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 7.1e-91
Identity = 177/194 (91.24%), Postives = 188/194 (96.91%), Query Frame = 0


Query: 1   MANPIQAPLIYVLLALLFVSSTIATSDVPFIVAHKKASLTRLKSGTERVSVSIDIYNQGS 60
           MAN IQA LI++LLALLFVSSTIA+SDVPFIVAHKKA+LTRLKSG ERVSVSI+IYNQGS
Sbjct: 1   MANLIQARLIHLLLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGS 60

Query: 61  STTYDVSLNDASWPADVFDIISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120
           ST YDV+LNDASWP DVFDI+SGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAV+T
Sbjct: 61  STAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVIT 120

Query: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSIIVLFIFLVA 180
           FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVS +VLF++LVA
Sbjct: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSFVVLFVYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           SPSKSAAKGSKKKR
Sbjct: 181 SPSKSAAKGSKKKR 194

[Close]

BLAST of Tan0016005 vs. ExPASy TrEMBL
Match: A0A6J1FAK9 (Translocon-associated protein subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111442301 PE=3 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 2.1e-90
Identity = 176/194 (90.72%), Postives = 187/194 (96.39%), Query Frame = 0


Query: 1   MANPIQAPLIYVLLALLFVSSTIATSDVPFIVAHKKASLTRLKSGTERVSVSIDIYNQGS 60
           MAN IQA LI++LLA LFVSSTIA+SDVPFIVAHKKA+LTRLKSG ERVSVSI+IYNQGS
Sbjct: 1   MANLIQARLIHLLLAFLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGS 60

Query: 61  STTYDVSLNDASWPADVFDIISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120
           ST YDV+LNDASWP DVFDI+SGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAV+T
Sbjct: 61  STAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVIT 120

Query: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSIIVLFIFLVA 180
           FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVS +VLF++LVA
Sbjct: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSFVVLFVYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           SPSKSAAKGSKKKR
Sbjct: 181 SPSKSAAKGSKKKR 194

[Close]

BLAST of Tan0016005 vs. ExPASy TrEMBL
Match: A0A6J1J5V1 (Translocon-associated protein subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111482040 PE=3 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 2.7e-90
Identity = 176/194 (90.72%), Postives = 187/194 (96.39%), Query Frame = 0


Query: 1   MANPIQAPLIYVLLALLFVSSTIATSDVPFIVAHKKASLTRLKSGTERVSVSIDIYNQGS 60
           MAN IQA LI++LLALLFVSSTIA+SDVPFIVAHKKA+LTRLKSG ERVSVSI+IYNQGS
Sbjct: 1   MANLIQARLIHLLLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGS 60

Query: 61  STTYDVSLNDASWPADVFDIISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120
           ST YDV+LNDASWP DVFDI+SGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAV+T
Sbjct: 61  STAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVIT 120

Query: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSIIVLFIFLVA 180
           FRVPTKSALQEALSTPILPLDVLADRPPEKKFEW KRLLAKYGSLISVVS +VLF++LVA
Sbjct: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWFKRLLAKYGSLISVVSFVVLFVYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           SPSKSAAKGSKKKR
Sbjct: 181 SPSKSAAKGSKKKR 194

[Close]

BLAST of Tan0016005 vs. TAIR 10
Match: AT5G14030.1 (translocon-associated protein beta (TRAPB) family protein )

HSP 1 Score: 246.1 bits (627), Expect = 2.3e-65
Identity = 123/194 (63.40%), Postives = 154/194 (79.38%), Query Frame = 0


Query: 1   MANPIQAPLIYVLLALLFVSSTIATSDVPFIVAHKKASLTRLKSGTERVSVSIDIYNQGS 60
           MA  +   LI  +   + VS++ ATS+VPF+V HKKA+L RLKSG ERVSVS DIYNQGS
Sbjct: 1   MAVAVAKLLISAMAVFMLVSASFATSEVPFMVVHKKATLNRLKSGAERVSVSYDIYNQGS 60

Query: 61  STTYDVSLNDASWPADVFDIISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120
           S+ YDV+L D SW    F++++G TSKSWERLDAGG LSHS ELEAK KG+F+G+PAVVT
Sbjct: 61  SSAYDVTLTDNSWDKKTFEVVNGNTSKSWERLDAGGILSHSIELEAKVKGVFYGAPAVVT 120

Query: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSIIVLFIFLVA 180
           FR+PTK ALQEA STP+LPLD+LAD+PP K  +  KRLLAKYGSL+SV+S++V FI+LVA
Sbjct: 121 FRIPTKPALQEAYSTPLLPLDILADKPPTKPLDVAKRLLAKYGSLVSVISMVVCFIYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           +P  + +K S KK+
Sbjct: 181 TPKSNVSKASSKKK 194

[Close]

BLAST of Tan0016005 vs. TAIR 10
Match: AT5G14030.2 (translocon-associated protein beta (TRAPB) family protein )

HSP 1 Score: 246.1 bits (627), Expect = 2.3e-65
Identity = 123/194 (63.40%), Postives = 154/194 (79.38%), Query Frame = 0


Query: 1   MANPIQAPLIYVLLALLFVSSTIATSDVPFIVAHKKASLTRLKSGTERVSVSIDIYNQGS 60
           MA  +   LI  +   + VS++ ATS+VPF+V HKKA+L RLKSG ERVSVS DIYNQGS
Sbjct: 1   MAVAVAKLLISAMAVFMLVSASFATSEVPFMVVHKKATLNRLKSGAERVSVSYDIYNQGS 60

Query: 61  STTYDVSLNDASWPADVFDIISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120
           S+ YDV+L D SW    F++++G TSKSWERLDAGG LSHS ELEAK KG+F+G+PAVVT
Sbjct: 61  SSAYDVTLTDNSWDKKTFEVVNGNTSKSWERLDAGGILSHSIELEAKVKGVFYGAPAVVT 120

Query: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSIIVLFIFLVA 180
           FR+PTK ALQEA STP+LPLD+LAD+PP K  +  KRLLAKYGSL+SV+S++V FI+LVA
Sbjct: 121 FRIPTKPALQEAYSTPLLPLDILADKPPTKPLDVAKRLLAKYGSLVSVISMVVCFIYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           +P  + +K S KK+
Sbjct: 181 TPKSNVSKASSKKK 194

[Close]

BLAST of Tan0016005 vs. TAIR 10
Match: AT5G14030.3 (translocon-associated protein beta (TRAPB) family protein )

HSP 1 Score: 246.1 bits (627), Expect = 2.3e-65
Identity = 123/194 (63.40%), Postives = 154/194 (79.38%), Query Frame = 0


Query: 1   MANPIQAPLIYVLLALLFVSSTIATSDVPFIVAHKKASLTRLKSGTERVSVSIDIYNQGS 60
           MA  +   LI  +   + VS++ ATS+VPF+V HKKA+L RLKSG ERVSVS DIYNQGS
Sbjct: 1   MAVAVAKLLISAMAVFMLVSASFATSEVPFMVVHKKATLNRLKSGAERVSVSYDIYNQGS 60

Query: 61  STTYDVSLNDASWPADVFDIISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120
           S+ YDV+L D SW    F++++G TSKSWERLDAGG LSHS ELEAK KG+F+G+PAVVT
Sbjct: 61  SSAYDVTLTDNSWDKKTFEVVNGNTSKSWERLDAGGILSHSIELEAKVKGVFYGAPAVVT 120

Query: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSIIVLFIFLVA 180
           FR+PTK ALQEA STP+LPLD+LAD+PP K  +  KRLLAKYGSL+SV+S++V FI+LVA
Sbjct: 121 FRIPTKPALQEAYSTPLLPLDILADKPPTKPLDVAKRLLAKYGSLVSVISMVVCFIYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           +P  + +K S KK+
Sbjct: 181 TPKSNVSKASSKKK 194

[Close]

BLAST of Tan0016005 vs. TAIR 10
Match: AT5G14030.4 (translocon-associated protein beta (TRAPB) family protein )

HSP 1 Score: 246.1 bits (627), Expect = 2.3e-65
Identity = 123/194 (63.40%), Postives = 154/194 (79.38%), Query Frame = 0


Query: 1   MANPIQAPLIYVLLALLFVSSTIATSDVPFIVAHKKASLTRLKSGTERVSVSIDIYNQGS 60
           MA  +   LI  +   + VS++ ATS+VPF+V HKKA+L RLKSG ERVSVS DIYNQGS
Sbjct: 1   MAVAVAKLLISAMAVFMLVSASFATSEVPFMVVHKKATLNRLKSGAERVSVSYDIYNQGS 60

Query: 61  STTYDVSLNDASWPADVFDIISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120
           S+ YDV+L D SW    F++++G TSKSWERLDAGG LSHS ELEAK KG+F+G+PAVVT
Sbjct: 61  SSAYDVTLTDNSWDKKTFEVVNGNTSKSWERLDAGGILSHSIELEAKVKGVFYGAPAVVT 120

Query: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSIIVLFIFLVA 180
           FR+PTK ALQEA STP+LPLD+LAD+PP K  +  KRLLAKYGSL+SV+S++V FI+LVA
Sbjct: 121 FRIPTKPALQEAYSTPLLPLDILADKPPTKPLDVAKRLLAKYGSLVSVISMVVCFIYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           +P  + +K S KK+
Sbjct: 181 TPKSNVSKASSKKK 194

The following BLAST results are available for this feature:

BLAST of Tan0016005 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0016005 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156478.1	3.5e-92	93.30	translocon-associated protein subunit beta [Momordica charantia]	[more]
XP_038894726.1	5.0e-91	89.69	translocon-associated protein subunit beta [Benincasa hispida]	[more]
XP_022928574.1	6.6e-91	92.27	translocon-associated protein subunit beta-like isoform X1 [Cucurbita moschata] ...	[more]
XP_022983434.1	1.5e-90	91.24	translocon-associated protein subunit beta isoform X1 [Cucurbita maxima]	[more]
XP_022935419.1	4.3e-90	90.72	translocon-associated protein subunit beta isoform X1 [Cucurbita moschata] >XP_0...	[more]

BLAST of Tan0016005 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DQQ5	1.7e-92	93.30	Translocon-associated protein subunit beta OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1EL83	3.2e-91	92.27	Translocon-associated protein subunit beta OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1J7C6	7.1e-91	91.24	Translocon-associated protein subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1FAK9	2.1e-90	90.72	Translocon-associated protein subunit beta OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1J5V1	2.7e-90	90.72	Translocon-associated protein subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]

BLAST of Tan0016005 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G14030.1	2.3e-65	63.40	translocon-associated protein beta (TRAPB) family protein	[more]
AT5G14030.2	2.3e-65	63.40	translocon-associated protein beta (TRAPB) family protein	[more]
AT5G14030.3	2.3e-65	63.40	translocon-associated protein beta (TRAPB) family protein	[more]
AT5G14030.4	2.3e-65	63.40	translocon-associated protein beta (TRAPB) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008856	Translocon-associated protein subunit beta	PIRSF	PIRSF016400	TRAP-beta	coord: 5..194 e-value: 4.7E-58 score: 193.6
None	No IPR available	PFAM	PF05753	TRAP_beta	coord: 16..190 e-value: 6.2E-52 score: 175.6
None	No IPR available	PANTHER	PTHR12861	TRANSLOCON-ASSOCIATED PROTEIN, BETA SUBUNIT PRECURSOR TRAP-BETA SIGNAL SEQUENCE RECEPTOR BETA SUBUNIT	coord: 9..193
None	No IPR available	PANTHER	PTHR12861:SF7	TRANSLOCON-ASSOCIATED PROTEIN SUBUNIT BETA-LIKE	coord: 9..193

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0016005.1	Tan0016005.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005783	endoplasmic reticulum