Tan0015971 (gene) Snake gourd v1

Overview


Name	Tan0015971
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Dynein light chain
Location	LG08: 72561226 .. 72562187 (+)
RNA-Seq Expression	Tan0015971
Synteny	Tan0015971

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGAGGGCAAAGCTGTGGTCCGCGAAACAGACATGCCAGAAGGGATCCAGGGCCATGTCCTTGAGTTGGCTTATAAAGCACTTGATCAACACGAAGTTTCCGACTGTCAATCCATTGCACGTTTCATCAAACAGGTTTAATTTTTTAAACATTCAGAATCTTCTTTATGTAGTGGTTTAAATTTCTATTTTATTAAATTAAAAATATCCTCTTTTCCCCTTTTCTTTCAAAAAAGGAAGACAAGTCCTTTCGTTGCAATAATAGATTGAAAAGATTCATTTTTGTAACCTGTAAAAGTTTTAGAGACCCTTTTATGATATAAAGAAGATATGCTTCATCATTCACAGTAACCACATCAATAAACAATATTACCTTTTTCTTTTAAAATATTGAGTGTGTGTCATTTTCAGATACTATAAATTTCTACACACACAAACAAAGATGATCTATGTTCACGCCATCCACCATCTGATCTGATCTGATGAGACTAAATCTGGAATATACTTTGTGTGGATGATGTTTGAATCAACTTGTCTGAAGAGTAAAGGGATATCATTTTGAATGAAACGACTCAGAAGTTCCCATGTTCATCATTTCTTTCTTTTTGCTGGTATGAGATCAGTATAATAATGAGAAAAAGTTGCTTGATATCAAATTATATAGTATTAAATGAACCGACTGACCCGACCCGTGACATGTTAATGAAAGATTACAAATAGTGTCTGTAATTAACTACATACTAATATGACTTTGACCTTTTTATAATTAGAGGTTTGACGAAGCTTATGGCCCGGCATGGCATTGTGTGGTGGGCAAAGCGTTTGGAGGTTGCATTACGCATTTATGTGGTAGTTTCATCTTCTTCCATGTGGATACGATGGAGTTTCTCATCTTTAAGGACGGAAGAGACTGCTCCAAAAGCATTGAAGAGACCGTTGGAGTTCGCCAGAAAAGTTAA

mRNA sequence

ATGTTGGAGGGCAAAGCTGTGGTCCGCGAAACAGACATGCCAGAAGGGATCCAGGGCCATGTCCTTGAGTTGGCTTATAAAGCACTTGATCAACACGAAGTTTCCGACTGTCAATCCATTGCACGTTTCATCAAACAGAGGTTTGACGAAGCTTATGGCCCGGCATGGCATTGTGTGGTGGGCAAAGCGTTTGGAGGTTGCATTACGCATTTATGTGGTAGTTTCATCTTCTTCCATGTGGATACGATGGAGTTTCTCATCTTTAAGGACGGAAGAGACTGCTCCAAAAGCATTGAAGAGACCGTTGGAGTTCGCCAGAAAAGTTAA

Coding sequence (CDS)

ATGTTGGAGGGCAAAGCTGTGGTCCGCGAAACAGACATGCCAGAAGGGATCCAGGGCCATGTCCTTGAGTTGGCTTATAAAGCACTTGATCAACACGAAGTTTCCGACTGTCAATCCATTGCACGTTTCATCAAACAGAGGTTTGACGAAGCTTATGGCCCGGCATGGCATTGTGTGGTGGGCAAAGCGTTTGGAGGTTGCATTACGCATTTATGTGGTAGTTTCATCTTCTTCCATGTGGATACGATGGAGTTTCTCATCTTTAAGGACGGAAGAGACTGCTCCAAAAGCATTGAAGAGACCGTTGGAGTTCGCCAGAAAAGTTAA

Protein sequence

MLEGKAVVRETDMPEGIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPAWHCVVGKAFGGCITHLCGSFIFFHVDTMEFLIFKDGRDCSKSIEETVGVRQKS

Homology

[Close]

BLAST of Tan0015971 vs. ExPASy Swiss-Prot
Match: Q94758 (Dynein light chain OS=Schistosoma mansoni OX=6183 GN=DLC PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 4.0e-16
Identity = 39/91 (42.86%), Postives = 58/91 (63.74%), Query Frame = 0


Query: 1  MLEGKAVVRETDMPEGIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPAWHCVV 60
          M E KAV++  DM E +Q   + +A  A+D+H++   + IA  IK+ FD  Y P WHC+V
Sbjct: 1  MSERKAVIKNADMSEEMQEDAIHIAAGAIDKHDLE--KDIAANIKKDFDRKYHPTWHCIV 60

Query: 61 GKAFGGCITHLCGSFIFFHVDTMEFLIFKDG 92
          G+ FG  +TH   +FI+F++D   FL+FK G
Sbjct: 61 GRHFGSYVTHETHNFIYFYLDDRAFLLFKSG 89

[Close]

BLAST of Tan0015971 vs. ExPASy Swiss-Prot
Match: Q94748 (Probable dynein light chain OS=Schistosoma mansoni OX=6183 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 9.0e-16
Identity = 39/91 (42.86%), Postives = 56/91 (61.54%), Query Frame = 0


Query: 1  MLEGKAVVRETDMPEGIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPAWHCVV 60
          M E KAV++  DM E +Q   +  A  ALD++E+   + +A +IK+ FD  Y P WHC+V
Sbjct: 1  MGERKAVIKNADMHEDMQETAVHTAAAALDKYEIE--KDVAAYIKKEFDRKYNPNWHCIV 60

Query: 61 GKAFGGCITHLCGSFIFFHVDTMEFLIFKDG 92
          GK FG  +TH    FI+F++    FL+FK G
Sbjct: 61 GKHFGSYVTHETQHFIYFYLQERAFLLFKSG 89

[Close]

BLAST of Tan0015971 vs. ExPASy Swiss-Prot
Match: O02414 (Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=1043166 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.2e-15
Identity = 37/91 (40.66%), Postives = 58/91 (63.74%), Query Frame = 0


Query: 1  MLEGKAVVRETDMPEGIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPAWHCVV 60
          M E KAV++  DMPE +Q   ++ A +AL++  +   + IA +IK+ FD+ Y P WHC+V
Sbjct: 1  MSERKAVIKNADMPEDMQQDAVDCATQALEKFNIE--KDIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GKAFGGCITHLCGSFIFFHVDTMEFLIFKDG 92
          G+ FG  +TH    FI+F++  +  L+FK G
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 89

[Close]

BLAST of Tan0015971 vs. ExPASy Swiss-Prot
Match: O96860 (Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=Cdlc2 PE=1 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 4.4e-15
Identity = 36/91 (39.56%), Postives = 58/91 (63.74%), Query Frame = 0


Query: 1  MLEGKAVVRETDMPEGIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPAWHCVV 60
          M + KAV++  DM E +Q   ++ A +AL+++ +   + IA FIK+ FD+ Y P WHC+V
Sbjct: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIE--KDIAAFIKKEFDKKYNPTWHCIV 60

Query: 61 GKAFGGCITHLCGSFIFFHVDTMEFLIFKDG 92
          G+ FG  +TH    FI+F++  +  L+FK G
Sbjct: 61 GRNFGSYVTHETRHFIYFYLGQVAILLFKSG 89

[Close]

BLAST of Tan0015971 vs. ExPASy Swiss-Prot
Match: Q22799 (Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 5.8e-15
Identity = 34/91 (37.36%), Postives = 59/91 (64.84%), Query Frame = 0


Query: 1  MLEGKAVVRETDMPEGIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPAWHCVV 60
          M++ KAV++  DM + +Q   ++ A +AL+++ +   + IA +IK+ FD+ Y P WHC+V
Sbjct: 1  MVDRKAVIKNADMSDDMQQDAIDCATQALEKYNIE--KDIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GKAFGGCITHLCGSFIFFHVDTMEFLIFKDG 92
          G+ FG  +TH    FI+F++  +  L+FK G
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

[Close]

BLAST of Tan0015971 vs. NCBI nr
Match: XP_022145583.1 (dynein light chain-like [Momordica charantia])

HSP 1 Score: 216.1 bits (549), Expect = 1.5e-52
Identity = 102/108 (94.44%), Postives = 103/108 (95.37%), Query Frame = 0


Query: 1   MLEGKAVVRETDMPEGIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPAWHCVV 60
           MLEGKA VRETDMPEGIQ HVLELAYKALD HEVSDCQSIARFIKQRFDEAYGPAWHCVV
Sbjct: 1   MLEGKAAVRETDMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVV 60

Query: 61  GKAFGGCITHLCGSFIFFHVDTMEFLIFKDGRDCSKSIEETVGVRQKS 109
           GKAFGGCITHLCGSFIFFHVD MEFLIFKDGRD SKSIEET+GVRQKS
Sbjct: 61  GKAFGGCITHLCGSFIFFHVDIMEFLIFKDGRDFSKSIEETLGVRQKS 108

[Close]

BLAST of Tan0015971 vs. NCBI nr
Match: XP_008442502.1 (PREDICTED: dynein light chain 1, cytoplasmic-like [Cucumis melo])

HSP 1 Score: 215.7 bits (548), Expect = 2.0e-52
Identity = 99/107 (92.52%), Postives = 103/107 (96.26%), Query Frame = 0


Query: 1   MLEGKAVVRETDMPEGIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPAWHCVV 60
           MLEGKAVVRETDMP+GIQ HVLELAYKALDQHEVSDCQSIA FIKQRFDEAYGPAWHCV 
Sbjct: 1   MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60

Query: 61  GKAFGGCITHLCGSFIFFHVDTMEFLIFKDGRDCSKSIEETVGVRQK 108
           GKAFGGCITHLCGSFIFFHVDTMEFL+FKDGRDCSKS+EETVGV +K
Sbjct: 61  GKAFGGCITHLCGSFIFFHVDTMEFLVFKDGRDCSKSVEETVGVCRK 107

[Close]

BLAST of Tan0015971 vs. NCBI nr
Match: KGN58830.1 (hypothetical protein Csa_001625 [Cucumis sativus])

HSP 1 Score: 212.2 bits (539), Expect = 2.2e-51
Identity = 97/107 (90.65%), Postives = 102/107 (95.33%), Query Frame = 0


Query: 1   MLEGKAVVRETDMPEGIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPAWHCVV 60
           MLEGKAVVRETDMP+GIQ HVLELAYKALDQHEVSDCQSIA FIKQRFDEAYGPAWHCV 
Sbjct: 1   MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60

Query: 61  GKAFGGCITHLCGSFIFFHVDTMEFLIFKDGRDCSKSIEETVGVRQK 108
           GKAFGGCITHLCGS+IFFHVDTMEFL+FKDGRDC KS+EETVGV +K
Sbjct: 61  GKAFGGCITHLCGSYIFFHVDTMEFLVFKDGRDCFKSVEETVGVCRK 107

[Close]

BLAST of Tan0015971 vs. NCBI nr
Match: PON90790.1 (Dynein light chain [Trema orientale])

HSP 1 Score: 185.3 bits (469), Expect = 2.8e-43
Identity = 83/108 (76.85%), Postives = 97/108 (89.81%), Query Frame = 0


Query: 1   MLEGKAVVRETDMPEGIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPAWHCVV 60
           MLEGKAVVRETDMPE +Q HV+ELAYKALD HEVSDCQSIA +IKQ+FDE YGPAW+CVV
Sbjct: 1   MLEGKAVVRETDMPEAMQSHVMELAYKALDLHEVSDCQSIANYIKQKFDEEYGPAWNCVV 60

Query: 61  GKAFGGCITHLCGSFIFFHVDTMEFLIFKDGRDCSKSIEETVGVRQKS 109
           GK FG CITHLCGSFIFFHV+ MEFLIFKDG+D +++++E +GV QK+
Sbjct: 61  GKDFGSCITHLCGSFIFFHVEMMEFLIFKDGKDFNETMDEAIGVLQKA 108

[Close]

BLAST of Tan0015971 vs. NCBI nr
Match: KAA8518956.1 (hypothetical protein F0562_016270 [Nyssa sinensis])

HSP 1 Score: 184.9 bits (468), Expect = 3.7e-43
Identity = 83/107 (77.57%), Postives = 94/107 (87.85%), Query Frame = 0


Query: 1   MLEGKAVVRETDMPEGIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPAWHCVV 60
           MLEGKAV+RETDMPE +Q HV+ELAY+ALD HE SDCQSIA +IKQ+FDEAYGPAWHCVV
Sbjct: 1   MLEGKAVLRETDMPEALQSHVMELAYQALDLHEASDCQSIAHYIKQKFDEAYGPAWHCVV 60

Query: 61  GKAFGGCITHLCGSFIFFHVDTMEFLIFKDGRDCSKSIEETVGVRQK 108
           GK FG CITHLCGSFIFF VD MEFL+FKDG+D ++S EE +GV QK
Sbjct: 61  GKDFGSCITHLCGSFIFFRVDMMEFLVFKDGKDLTESKEEAIGVLQK 107

[Close]

BLAST of Tan0015971 vs. ExPASy TrEMBL
Match: A0A6J1CWC6 (Dynein light chain OS=Momordica charantia OX=3673 GN=LOC111015000 PE=3 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 7.3e-53
Identity = 102/108 (94.44%), Postives = 103/108 (95.37%), Query Frame = 0


Query: 1   MLEGKAVVRETDMPEGIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPAWHCVV 60
           MLEGKA VRETDMPEGIQ HVLELAYKALD HEVSDCQSIARFIKQRFDEAYGPAWHCVV
Sbjct: 1   MLEGKAAVRETDMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVV 60

Query: 61  GKAFGGCITHLCGSFIFFHVDTMEFLIFKDGRDCSKSIEETVGVRQKS 109
           GKAFGGCITHLCGSFIFFHVD MEFLIFKDGRD SKSIEET+GVRQKS
Sbjct: 61  GKAFGGCITHLCGSFIFFHVDIMEFLIFKDGRDFSKSIEETLGVRQKS 108

[Close]

BLAST of Tan0015971 vs. ExPASy TrEMBL
Match: A0A1S3B5U2 (Dynein light chain OS=Cucumis melo OX=3656 GN=LOC103486353 PE=3 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 9.5e-53
Identity = 99/107 (92.52%), Postives = 103/107 (96.26%), Query Frame = 0


Query: 1   MLEGKAVVRETDMPEGIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPAWHCVV 60
           MLEGKAVVRETDMP+GIQ HVLELAYKALDQHEVSDCQSIA FIKQRFDEAYGPAWHCV 
Sbjct: 1   MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60

Query: 61  GKAFGGCITHLCGSFIFFHVDTMEFLIFKDGRDCSKSIEETVGVRQK 108
           GKAFGGCITHLCGSFIFFHVDTMEFL+FKDGRDCSKS+EETVGV +K
Sbjct: 61  GKAFGGCITHLCGSFIFFHVDTMEFLVFKDGRDCSKSVEETVGVCRK 107

[Close]

BLAST of Tan0015971 vs. ExPASy TrEMBL
Match: A0A0A0LA26 (Dynein light chain OS=Cucumis sativus OX=3659 GN=Csa_3G733350 PE=3 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.1e-51
Identity = 97/107 (90.65%), Postives = 102/107 (95.33%), Query Frame = 0


Query: 1   MLEGKAVVRETDMPEGIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPAWHCVV 60
           MLEGKAVVRETDMP+GIQ HVLELAYKALDQHEVSDCQSIA FIKQRFDEAYGPAWHCV 
Sbjct: 1   MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60

Query: 61  GKAFGGCITHLCGSFIFFHVDTMEFLIFKDGRDCSKSIEETVGVRQK 108
           GKAFGGCITHLCGS+IFFHVDTMEFL+FKDGRDC KS+EETVGV +K
Sbjct: 61  GKAFGGCITHLCGSYIFFHVDTMEFLVFKDGRDCFKSVEETVGVCRK 107

[Close]

BLAST of Tan0015971 vs. ExPASy TrEMBL
Match: A0A2P5EZ32 (Dynein light chain OS=Trema orientale OX=63057 GN=TorRG33x02_134280 PE=3 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.4e-43
Identity = 83/108 (76.85%), Postives = 97/108 (89.81%), Query Frame = 0


Query: 1   MLEGKAVVRETDMPEGIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPAWHCVV 60
           MLEGKAVVRETDMPE +Q HV+ELAYKALD HEVSDCQSIA +IKQ+FDE YGPAW+CVV
Sbjct: 1   MLEGKAVVRETDMPEAMQSHVMELAYKALDLHEVSDCQSIANYIKQKFDEEYGPAWNCVV 60

Query: 61  GKAFGGCITHLCGSFIFFHVDTMEFLIFKDGRDCSKSIEETVGVRQKS 109
           GK FG CITHLCGSFIFFHV+ MEFLIFKDG+D +++++E +GV QK+
Sbjct: 61  GKDFGSCITHLCGSFIFFHVEMMEFLIFKDGKDFNETMDEAIGVLQKA 108

[Close]

BLAST of Tan0015971 vs. ExPASy TrEMBL
Match: A0A5J4ZMN8 (Dynein light chain OS=Nyssa sinensis OX=561372 GN=F0562_016270 PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.8e-43
Identity = 83/107 (77.57%), Postives = 94/107 (87.85%), Query Frame = 0


Query: 1   MLEGKAVVRETDMPEGIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPAWHCVV 60
           MLEGKAV+RETDMPE +Q HV+ELAY+ALD HE SDCQSIA +IKQ+FDEAYGPAWHCVV
Sbjct: 1   MLEGKAVLRETDMPEALQSHVMELAYQALDLHEASDCQSIAHYIKQKFDEAYGPAWHCVV 60

Query: 61  GKAFGGCITHLCGSFIFFHVDTMEFLIFKDGRDCSKSIEETVGVRQK 108
           GK FG CITHLCGSFIFF VD MEFL+FKDG+D ++S EE +GV QK
Sbjct: 61  GKDFGSCITHLCGSFIFFRVDMMEFLVFKDGKDLTESKEEAIGVLQK 107

[Close]

BLAST of Tan0015971 vs. TAIR 10
Match: AT1G52240.2 (RHO guanyl-nucleotide exchange factor 11 )

HSP 1 Score: 100.1 bits (248), Expect = 1.1e-21
Identity = 47/89 (52.81%), Postives = 62/89 (69.66%), Query Frame = 0


Query: 1  MLEGKAVVRETDMPEGIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPAWHCVV 60
          MLEGKA+V ++DMP  +Q   +  A +ALD  +V DC+SIA  IK+ FDE YG  W CVV
Sbjct: 1  MLEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCVV 60

Query: 61 GKAFGGCITHLCGSFIFFHVDTMEFLIFK 90
          G  FG   TH  G+FI+F ++T++FLIFK
Sbjct: 61 GSNFGCFFTHSKGTFIYFQLETLKFLIFK 89

[Close]

BLAST of Tan0015971 vs. TAIR 10
Match: AT3G16120.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 98.2 bits (243), Expect = 4.3e-21
Identity = 48/89 (53.93%), Postives = 60/89 (67.42%), Query Frame = 0


Query: 1  MLEGKAVVRETDMPEGIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPAWHCVV 60
          MLEGKA V ETDMP  +Q   +++A ++LD  +V D  SIA  IK+ FDE YG  W CVV
Sbjct: 1  MLEGKAKVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVV 60

Query: 61 GKAFGGCITHLCGSFIFFHVDTMEFLIFK 90
          G  FG   TH  G+FI+FH+ T+ FLIFK
Sbjct: 61 GTNFGCFFTHSKGTFIYFHLGTLNFLIFK 89

[Close]

BLAST of Tan0015971 vs. TAIR 10
Match: AT4G27360.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 93.2 bits (230), Expect = 1.4e-19
Identity = 44/89 (49.44%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 1  MLEGKAVVRETDMPEGIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPAWHCVV 60
          MLEGKAV+ +TDM + ++   L LA KALD  +V++   IARFIK+ FD +YG  W C+V
Sbjct: 1  MLEGKAVMGDTDMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSYGSGWQCIV 60

Query: 61 GKAFGGCITHLCGSFIFFHVDTMEFLIFK 90
          G  FG  +TH  G FI F V ++  L+FK
Sbjct: 61 GTHFGSFVTHCSGCFIHFSVGSLTILLFK 89

[Close]

BLAST of Tan0015971 vs. TAIR 10
Match: AT5G20110.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 77.8 bits (190), Expect = 6.0e-15
Identity = 34/78 (43.59%), Postives = 47/78 (60.26%), Query Frame = 0


Query: 12  DMPEGIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPAWHCVVGKAFGGCITHL 71
           DMP  +Q H    A   LD  E    + +A  +K+ FD+ YGPAWHC+VG +FG  +TH 
Sbjct: 123 DMPGFMQAHAFRCARMTLDSLEKFSSKHMAFNLKKEFDKGYGPAWHCIVGSSFGSFVTHS 182

Query: 72  CGSFIFFHVDTMEFLIFK 90
            G FI+F +D +  L+FK
Sbjct: 183 TGCFIYFSMDKLYVLLFK 200

[Close]

BLAST of Tan0015971 vs. TAIR 10
Match: AT4G15930.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 77.0 bits (188), Expect = 1.0e-14
Identity = 32/87 (36.78%), Postives = 54/87 (62.07%), Query Frame = 0


Query: 5   KAVVRETDMPEGIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPAWHCVVGKAF 64
           +AV++  DM + +Q   +E+A  A +++ V   + IA  IK+ FD+ +G  WHC+VG+ F
Sbjct: 39  RAVIKSADMKDDMQKEAIEIAISAFEKYSVE--KDIAENIKKEFDKKHGATWHCIVGRNF 98

Query: 65  GGCITHLCGSFIFFHVDTMEFLIFKDG 92
           G  +TH    F++F++D    L+FK G
Sbjct: 99  GSYVTHETNHFVYFYLDQKAVLLFKSG 123

The following BLAST results are available for this feature:

BLAST of Tan0015971 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94758	4.0e-16	42.86	Dynein light chain OS=Schistosoma mansoni OX=6183 GN=DLC PE=1 SV=1	[more]
Q94748	9.0e-16	42.86	Probable dynein light chain OS=Schistosoma mansoni OX=6183 PE=3 SV=1	[more]
O02414	1.2e-15	40.66	Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=10431...	[more]
O96860	4.4e-15	39.56	Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=Cdlc2 PE...	[more]
Q22799	5.8e-15	37.36	Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=...	[more]

BLAST of Tan0015971 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145583.1	1.5e-52	94.44	dynein light chain-like [Momordica charantia]	[more]
XP_008442502.1	2.0e-52	92.52	PREDICTED: dynein light chain 1, cytoplasmic-like [Cucumis melo]	[more]
KGN58830.1	2.2e-51	90.65	hypothetical protein Csa_001625 [Cucumis sativus]	[more]
PON90790.1	2.8e-43	76.85	Dynein light chain [Trema orientale]	[more]
KAA8518956.1	3.7e-43	77.57	hypothetical protein F0562_016270 [Nyssa sinensis]	[more]

BLAST of Tan0015971 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CWC6	7.3e-53	94.44	Dynein light chain OS=Momordica charantia OX=3673 GN=LOC111015000 PE=3 SV=1	[more]
A0A1S3B5U2	9.5e-53	92.52	Dynein light chain OS=Cucumis melo OX=3656 GN=LOC103486353 PE=3 SV=1	[more]
A0A0A0LA26	1.1e-51	90.65	Dynein light chain OS=Cucumis sativus OX=3659 GN=Csa_3G733350 PE=3 SV=1	[more]
A0A2P5EZ32	1.4e-43	76.85	Dynein light chain OS=Trema orientale OX=63057 GN=TorRG33x02_134280 PE=3 SV=1	[more]
A0A5J4ZMN8	1.8e-43	77.57	Dynein light chain OS=Nyssa sinensis OX=561372 GN=F0562_016270 PE=3 SV=1	[more]

BLAST of Tan0015971 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52240.2	1.1e-21	52.81	RHO guanyl-nucleotide exchange factor 11	[more]
AT3G16120.1	4.3e-21	53.93	Dynein light chain type 1 family protein	[more]
AT4G27360.1	1.4e-19	49.44	Dynein light chain type 1 family protein	[more]
AT5G20110.1	6.0e-15	43.59	Dynein light chain type 1 family protein	[more]
AT4G15930.1	1.0e-14	36.78	Dynein light chain type 1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001372	Dynein light chain, type 1/2	SMART	SM01375	Dynein_light_2	coord: 1..90 e-value: 6.9E-39 score: 145.2
IPR001372	Dynein light chain, type 1/2	PFAM	PF01221	Dynein_light	coord: 5..89 e-value: 3.9E-30 score: 104.1
IPR001372	Dynein light chain, type 1/2	PANTHER	PTHR11886	DYNEIN LIGHT CHAIN	coord: 1..107
IPR037177	Dynein light chain superfamily	GENE3D	3.30.740.10	Protein Inhibitor Of Neuronal Nitric Oxide Synthase;	coord: 2..90 e-value: 2.0E-30 score: 106.6
IPR037177	Dynein light chain superfamily	SUPERFAMILY	54648	DLC	coord: 1..90
None	No IPR available	PANTHER	PTHR11886:SF85	DYNEIN LIGHT CHAIN	coord: 1..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0015971.1	Tan0015971.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0030286	dynein complex
cellular_component	GO:0005874	microtubule
molecular_function	GO:0045505	dynein intermediate chain binding
molecular_function	GO:0051959	dynein light intermediate chain binding