Tan0015718 (gene) Snake gourd v1

Overview


Name	Tan0015718
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	40S ribosomal protein S30
Location	LG08: 778626 .. 779337 (+)
RNA-Seq Expression	Tan0015718
Synteny	Tan0015718

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGCGTTATTCAGTTTCTATCGGACGAAGCGCGCAAACCAGTCGCCGAACATACAGAAGACGAGAAGTCGCTTATCAGATTCGCCATGGGTAAAGCTCCAACTCCATATCATCCTTTCAGATTTTACTAATTTCCTCTGCTCGATGTTCCTTATTAATCATCTTCATCTATGTAATCGACATTCAGGTAAGGTTCACGGATCTTTGGCTCGTGCCGGTAAGGTGAGAGGCCAGACACCAAAAGTTGCTAAACAAGACAAGAAGAAGAAGCCACGAGGACGTGCACACAAACGGATGCAATACAACCGCAGATTCGTCACTGCTGGTAAGTTCTTATTTCCGCTCTCTCTGATACTCTGATCATGTTCGAACGCATCATTTTCTAGGTTTTTATGAATTTTAATTTCCACTCGCAGTTGTTGGCTTCGGCAAGAAGAGAGGACCAAACTCGTCCGAGAAGTAAGAGATTCGAGAATGCGATATTACAGTTTTTTTTTTTCCTGTTATTTGGAGATATTTTATACTTCTGTTAGTTCTTCATTGATGTGCTTAATTTGACATTTATCTGGAGGATGATAGTATTCTTTCTTTAGAAGGTTTTTTGTTTTGTCACTTAGTGCTTTGTTTACATTTTAATTTTGATGTTTCCCAATCCGATGAGTTTGTCGAGTATTTGTCAATAAATTTTAGTAATGAATAATACTATTAGAGT

mRNA sequence

TTTGCGTTATTCAGTTTCTATCGGACGAAGCGCGCAAACCAGTCGCCGAACATACAGAAGACGAGAAGTCGCTTATCAGATTCGCCATGGGTAAGGTTCACGGATCTTTGGCTCGTGCCGGTAAGGTGAGAGGCCAGACACCAAAAGTTGCTAAACAAGACAAGAAGAAGAAGCCACGAGGACGTGCACACAAACGGATGCAATACAACCGCAGATTCGTCACTGCTGTTGTTGGCTTCGGCAAGAAGAGAGGACCAAACTCGTCCGAGAAGTAAGAGATTCGAGAATGCGATATTACAGTTTTTTTTTTTCCTGTTATTTGGAGATATTTTATACTTCTGTTAGTTCTTCATTGATGTGCTTAATTTGACATTTATCTGGAGGATGATAGTATTCTTTCTTTAGAAGGTTTTTTGTTTTGTCACTTAGTGCTTTGTTTACATTTTAATTTTGATGTTTCCCAATCCGATGAGTTTGTCGAGTATTTGTCAATAAATTTTAGTAATGAATAATACTATTAGAGT

Coding sequence (CDS)

ATGGGTAAGGTTCACGGATCTTTGGCTCGTGCCGGTAAGGTGAGAGGCCAGACACCAAAAGTTGCTAAACAAGACAAGAAGAAGAAGCCACGAGGACGTGCACACAAACGGATGCAATACAACCGCAGATTCGTCACTGCTGTTGTTGGCTTCGGCAAGAAGAGAGGACCAAACTCGTCCGAGAAGTAA

Protein sequence

MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

Homology

[Close]

BLAST of Tan0015718 vs. ExPASy Swiss-Prot
Match: P49689 (40S ribosomal protein S30 OS=Arabidopsis thaliana OX=3702 GN=RPS30A PE=3 SV=3)

HSP 1 Score: 119.8 bits (299), Expect = 1.1e-26
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

[Close]

BLAST of Tan0015718 vs. ExPASy Swiss-Prot
Match: P62866 (40S ribosomal protein S30 OS=Bos taurus OX=9913 GN=FAU PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 5.5e-18
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 3  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 61
          KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct: 1  KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

[Close]

BLAST of Tan0015718 vs. ExPASy Swiss-Prot
Match: P62860 (40S ribosomal protein S30 OS=Cricetulus griseus OX=10029 GN=FAU PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 5.5e-18
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 3  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 61
          KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct: 1  KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

[Close]

BLAST of Tan0015718 vs. ExPASy Swiss-Prot
Match: P62861 (40S ribosomal protein S30 OS=Homo sapiens OX=9606 GN=FAU PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 5.5e-18
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 3  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 61
          KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct: 1  KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

[Close]

BLAST of Tan0015718 vs. ExPASy Swiss-Prot
Match: P62862 (40S ribosomal protein S30 OS=Mus musculus OX=10090 GN=Fau PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 5.5e-18
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 3  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 61
          KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct: 1  KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

[Close]

BLAST of Tan0015718 vs. NCBI nr
Match: CAA2953813.1 (40s ribosomal s30 [Olea europaea subsp. europaea])

HSP 1 Score: 122.9 bits (307), Expect = 1.0e-24
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1   MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
           MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 48  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 107

Query: 61  EK 63
           EK
Sbjct: 108 EK 109

[Close]

BLAST of Tan0015718 vs. NCBI nr
Match: KAG6599498.1 (40S ribosomal protein S30, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 122.9 bits (307), Expect = 1.0e-24
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1   MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
           MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 50  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 109

Query: 61  EK 63
           EK
Sbjct: 110 EK 111

[Close]

BLAST of Tan0015718 vs. NCBI nr
Match: ESR64610.1 (hypothetical protein CICLE_v10009868mg [Citrus clementina] >GAY50417.1 hypothetical protein CUMW_126480 [Citrus unshiu])

HSP 1 Score: 122.9 bits (307), Expect = 1.0e-24
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1   MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
           MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 72  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 131

Query: 61  EK 63
           EK
Sbjct: 132 EK 133

[Close]

BLAST of Tan0015718 vs. NCBI nr
Match: PIA64528.1 (hypothetical protein AQUCO_00100184v1, partial [Aquilegia coerulea])

HSP 1 Score: 122.9 bits (307), Expect = 1.0e-24
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1   MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
           MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 42  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 101

Query: 61  EK 63
           EK
Sbjct: 102 EK 103

[Close]

BLAST of Tan0015718 vs. NCBI nr
Match: KAG7021908.1 (40S ribosomal protein S30, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 122.9 bits (307), Expect = 1.0e-24
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

[Close]

BLAST of Tan0015718 vs. ExPASy TrEMBL
Match: A0A368PSS0 (40S ribosomal protein S30 OS=Setaria italica OX=4555 GN=SETIT_1G356000v2 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.8e-25
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

[Close]

BLAST of Tan0015718 vs. ExPASy TrEMBL
Match: M5WRX6 (40S ribosomal protein S30 OS=Prunus persica OX=3760 GN=PRUPE_3G053900 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.8e-25
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

[Close]

BLAST of Tan0015718 vs. ExPASy TrEMBL
Match: A0A6J1KXK5 (40S ribosomal protein S30 OS=Cucurbita maxima OX=3661 GN=LOC111498467 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.8e-25
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

[Close]

BLAST of Tan0015718 vs. ExPASy TrEMBL
Match: A0A7I8KYK5 (40S ribosomal protein S30 OS=Spirodela intermedia OX=51605 GN=SI7747_09012508 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.8e-25
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

[Close]

BLAST of Tan0015718 vs. ExPASy TrEMBL
Match: C5XV41 (40S ribosomal protein S30 OS=Sorghum bicolor OX=4558 GN=SORBI_3004G335600 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.8e-25
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

[Close]

BLAST of Tan0015718 vs. TAIR 10
Match: AT2G19750.1 (Ribosomal protein S30 family protein )

HSP 1 Score: 119.8 bits (299), Expect = 7.9e-28
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

[Close]

BLAST of Tan0015718 vs. TAIR 10
Match: AT4G29390.1 (Ribosomal protein S30 family protein )

HSP 1 Score: 119.8 bits (299), Expect = 7.9e-28
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

[Close]

BLAST of Tan0015718 vs. TAIR 10
Match: AT5G56670.1 (Ribosomal protein S30 family protein )

HSP 1 Score: 119.8 bits (299), Expect = 7.9e-28
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

The following BLAST results are available for this feature:

BLAST of Tan0015718 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49689	1.1e-26	96.77	40S ribosomal protein S30 OS=Arabidopsis thaliana OX=3702 GN=RPS30A PE=3 SV=3	[more]
P62866	5.5e-18	79.31	40S ribosomal protein S30 OS=Bos taurus OX=9913 GN=FAU PE=3 SV=1	[more]
P62860	5.5e-18	79.31	40S ribosomal protein S30 OS=Cricetulus griseus OX=10029 GN=FAU PE=3 SV=1	[more]
P62861	5.5e-18	79.31	40S ribosomal protein S30 OS=Homo sapiens OX=9606 GN=FAU PE=1 SV=1	[more]
P62862	5.5e-18	79.31	40S ribosomal protein S30 OS=Mus musculus OX=10090 GN=Fau PE=1 SV=1	[more]

BLAST of Tan0015718 vs. NCBI nr


Match Name	E-value	Identity	Description
CAA2953813.1	1.0e-24	100.00	40s ribosomal s30 [Olea europaea subsp. europaea]	[more]
KAG6599498.1	1.0e-24	100.00	40S ribosomal protein S30, partial [Cucurbita argyrosperma subsp. sororia]	[more]
ESR64610.1	1.0e-24	100.00	hypothetical protein CICLE_v10009868mg [Citrus clementina] >GAY50417.1 hypotheti...	[more]
PIA64528.1	1.0e-24	100.00	hypothetical protein AQUCO_00100184v1, partial [Aquilegia coerulea]	[more]
KAG7021908.1	1.0e-24	100.00	40S ribosomal protein S30, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Tan0015718 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A368PSS0	4.8e-25	100.00	40S ribosomal protein S30 OS=Setaria italica OX=4555 GN=SETIT_1G356000v2 PE=3 SV...	[more]
M5WRX6	4.8e-25	100.00	40S ribosomal protein S30 OS=Prunus persica OX=3760 GN=PRUPE_3G053900 PE=3 SV=1	[more]
A0A6J1KXK5	4.8e-25	100.00	40S ribosomal protein S30 OS=Cucurbita maxima OX=3661 GN=LOC111498467 PE=3 SV=1	[more]
A0A7I8KYK5	4.8e-25	100.00	40S ribosomal protein S30 OS=Spirodela intermedia OX=51605 GN=SI7747_09012508 PE...	[more]
C5XV41	4.8e-25	100.00	40S ribosomal protein S30 OS=Sorghum bicolor OX=4558 GN=SORBI_3004G335600 PE=3 S...	[more]

BLAST of Tan0015718 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G19750.1	7.9e-28	96.77	Ribosomal protein S30 family protein	[more]
AT4G29390.1	7.9e-28	96.77	Ribosomal protein S30 family protein	[more]
AT5G56670.1	7.9e-28	96.77	Ribosomal protein S30 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006846	Ribosomal protein S30	PFAM	PF04758	Ribosomal_S30	coord: 3..59 e-value: 1.4E-30 score: 105.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..40
None	No IPR available	PANTHER	PTHR12650:SF28	40S RIBOSOMAL PROTEIN S30	coord: 1..62
None	No IPR available	PANTHER	PTHR12650	40S RIBOSOMAL PROTEIN S30/UBIQUITIN-LIKE PROTEIN FUBI	coord: 1..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0015718.1	Tan0015718.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome