Tan0015556 (gene) Snake gourd v1

Overview


Name	Tan0015556
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	RING-type domain-containing protein
Location	LG11: 20935636 .. 20936457 (+)
RNA-Seq Expression	Tan0015556
Synteny	Tan0015556

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCACAATCTCTTTTCTCTCTCTTTTTAAGCATAAAAGGAAAAGGCAAAGAGCGGTTCTCTCAATTTCTGAAACACAGTTTTTAGGCATTTTTAATTCTTCAAATTATGGGTTTACAGAGCCAACTCAACGACTTCTCCTCCGACTCTCTCCCTCTCTTCTTCCTCTCTCTCCTCGCCAATTTCCTCTCTCTCCTCCGCCGCTTCTTTCTCTCCGCCGCCCCTCCCTCCGCCGACCACTCTCTCCCCCACCATCTTCATCTCAATCGCCTCCTCTCCCACCGCTACCCGGAAGACTCCTCCGCCCCCGCCTGCGACTGCGTCGTCTGCCTCTCCCCCCTCTCCGCCGGCCACCTCGTCCGCCGCCTCCCCTGCCGTCACCTCTTCCACAAGGACTGCCTCGACGGTTGGCTTCATCATCTCAACTTCAACTGCCCTCTCTGCCGCTCTCCTCTTCTTTTAGACCAGCGCGTTCCCTTCACGCGCCACCGCCTCCGTCTCCCTGACCACGTCATCGCTTGATTCTCTGTACGATGATCCTACGGCTGTGGATCTACCACGTGTTCGCATCCTTGTGATTCCTCCTGATGATGATCCCCCATTTCTTTCTTTCTTTTACCTTTTTCTGGGTATTATTATTATTATTTTTTTACATTCTTTTACCTTTTTTTTTTACAATTTTTTAGGGGGGGTCCTCTTATGGCAGTTTTGACCATGGGCTTTCCTTTTTTTATTTTTATTTTTTTAGATATTTAAATATATTTCTAGATTTTTTTTTTCTTTTCCTTTTTTTGGAAGAATCCTCACGGATTTTTTATGATTTAC

mRNA sequence

CCACAATCTCTTTTCTCTCTCTTTTTAAGCATAAAAGGAAAAGGCAAAGAGCGGTTCTCTCAATTTCTGAAACACAGTTTTTAGGCATTTTTAATTCTTCAAATTATGGGTTTACAGAGCCAACTCAACGACTTCTCCTCCGACTCTCTCCCTCTCTTCTTCCTCTCTCTCCTCGCCAATTTCCTCTCTCTCCTCCGCCGCTTCTTTCTCTCCGCCGCCCCTCCCTCCGCCGACCACTCTCTCCCCCACCATCTTCATCTCAATCGCCTCCTCTCCCACCGCTACCCGGAAGACTCCTCCGCCCCCGCCTGCGACTGCGTCGTCTGCCTCTCCCCCCTCTCCGCCGGCCACCTCGTCCGCCGCCTCCCCTGCCGTCACCTCTTCCACAAGGACTGCCTCGACGGTTGGCTTCATCATCTCAACTTCAACTGCCCTCTCTGCCGCTCTCCTCTTCTTTTAGACCAGCGCGTTCCCTTCACGCGCCACCGCCTCCGTCTCCCTGACCACGTCATCGCTTGATTCTCTGTACGATGATCCTACGGCTGTGGATCTACCACGTGTTCGCATCCTTGTGATTCCTCCTGATGATGATCCCCCATTTCTTTCTTTCTTTTACCTTTTTCTGGGTATTATTATTATTATTTTTTTACATTCTTTTACCTTTTTTTTTTACAATTTTTTAGGGGGGGTCCTCTTATGGCAGTTTTGACCATGGGCTTTCCTTTTTTTATTTTTATTTTTTTAGATATTTAAATATATTTCTAGATTTTTTTTTTCTTTTCCTTTTTTTGGAAGAATCCTCACGGATTTTTTATGATTTAC

Coding sequence (CDS)

ATGGGTTTACAGAGCCAACTCAACGACTTCTCCTCCGACTCTCTCCCTCTCTTCTTCCTCTCTCTCCTCGCCAATTTCCTCTCTCTCCTCCGCCGCTTCTTTCTCTCCGCCGCCCCTCCCTCCGCCGACCACTCTCTCCCCCACCATCTTCATCTCAATCGCCTCCTCTCCCACCGCTACCCGGAAGACTCCTCCGCCCCCGCCTGCGACTGCGTCGTCTGCCTCTCCCCCCTCTCCGCCGGCCACCTCGTCCGCCGCCTCCCCTGCCGTCACCTCTTCCACAAGGACTGCCTCGACGGTTGGCTTCATCATCTCAACTTCAACTGCCCTCTCTGCCGCTCTCCTCTTCTTTTAGACCAGCGCGTTCCCTTCACGCGCCACCGCCTCCGTCTCCCTGACCACGTCATCGCTTGA

Protein sequence

MGLQSQLNDFSSDSLPLFFLSLLANFLSLLRRFFLSAAPPSADHSLPHHLHLNRLLSHRYPEDSSAPACDCVVCLSPLSAGHLVRRLPCRHLFHKDCLDGWLHHLNFNCPLCRSPLLLDQRVPFTRHRLRLPDHVIA

Homology

[Close]

BLAST of Tan0015556 vs. ExPASy Swiss-Prot
Match: Q9ZU51 (E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 SV=2)

HSP 1 Score: 130.6 bits (327), Expect = 1.4e-29
Identity = 70/123 (56.91%), Postives = 84/123 (68.29%), Query Frame = 0


Query: 1   MGLQSQLNDFSSDSLPLFFLSLLANFLSLLRRFFL--SAAPPSADHS----LPHHLHLNR 60
           MGLQ QL+D SSDS+PL  L+LLA F   +R   L  S+AP     S    L   L+LNR
Sbjct: 1   MGLQGQLSDVSSDSIPLMLLALLATFFRHVRSLLLFPSSAPVVVVTSNLSVLADQLNLNR 60

Query: 61  LLSHRYPEDSSAPACDCVVCLSPLSAGHLVRRLPCRHLFHKDCLDGWLHHLNFNCPLCRS 118
           L S+RY +++   A DC+VCLS L  G  VR+L CRH+FHK CL+GWL HLNFNCPLCRS
Sbjct: 61  LFSYRYSDNA---ASDCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRS 120

[Close]

BLAST of Tan0015556 vs. ExPASy Swiss-Prot
Match: Q9ZT50 (E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana OX=3702 GN=RHA2A PE=1 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.4e-26
Identity = 69/142 (48.59%), Postives = 80/142 (56.34%), Query Frame = 0


Query: 1   MGLQSQLNDFSSDSLPLFFLSLLANFLSLLRRFFLSAAPPSADH---------------- 60
           MGLQ QL+D SSDS+PL  LSLLA F++ LR F L     S  +                
Sbjct: 1   MGLQGQLSDVSSDSIPLMLLSLLAVFINHLRSFLLRLTSKSNPNLPVDDVSIASGLANII 60

Query: 61  SLPHHLHLNRLLSHRYPEDSSAPACDCVVCLSPLSAGHLVRRLPCRHLFHKDCLDGWLHH 120
            L   L LNRL S+R   D      DCVVCLS L  G  VR+L CRH+FHK CL+GWLH 
Sbjct: 61  VLADQLSLNRLFSYRC-GDGGGGGSDCVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQ 120

Query: 121 LNFNCPLCRSPLLLDQRVPFTR 127
            NF CPLCRS L+ D  V  T+
Sbjct: 121 FNFTCPLCRSALVSDDCVSKTQ 141

[Close]

BLAST of Tan0015556 vs. ExPASy Swiss-Prot
Match: Q9SI09 (Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=XERICO PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.6e-09
Identity = 23/49 (46.94%), Postives = 32/49 (65.31%), Query Frame = 0


Query: 70  DCVVCLSPLSAGHLVRRLPCRHLFHKDCLDGWLHHLNFNCPLCRSPLLL 119
           +C VCLS       + +L C HLFHK CL+ W+ + N  CPLCR+PL++
Sbjct: 102 ECSVCLSKFQGDSEINKLKCGHLFHKTCLEKWIDYWNITCPLCRTPLVV 150

[Close]

BLAST of Tan0015556 vs. ExPASy Swiss-Prot
Match: Q8GYT9 (E3 ubiquitin-protein ligase SIS3 OS=Arabidopsis thaliana OX=3702 GN=SIS3 PE=2 SV=2)

HSP 1 Score: 59.3 bits (142), Expect = 3.9e-08
Identity = 33/86 (38.37%), Postives = 44/86 (51.16%), Query Frame = 0


Query: 34  FLSAAPPSADHSLPHHLHLNRLLSHRYPEDSSAPACDCVVCLSPLSAGHLVRRLPCRHLF 93
           +L+ A   A  +L   L   RL +   P+D      +C++CL     GH VR LPC H F
Sbjct: 204 YLTPAQTEAVEALIQELPKFRLKA--VPDDCG----ECLICLEEFHIGHEVRGLPCAHNF 263

Query: 94  HKDCLDGWLHHLNFNCPLCRSPLLLD 120
           H +C+D WL  LN  CP CR  +  D
Sbjct: 264 HVECIDQWL-RLNVKCPRCRCSVFPD 282

[Close]

BLAST of Tan0015556 vs. ExPASy Swiss-Prot
Match: Q7T0Q3 (E3 ubiquitin-protein ligase RNF126-A OS=Xenopus laevis OX=8355 GN=rnf126-a PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.1e-08
Identity = 31/94 (32.98%), Postives = 45/94 (47.87%), Query Frame = 0


Query: 23  LANFLSLLRRFFLSAAPPSADHSLPHHLHLNRLLSHRYPEDSSAPACDCVVCLSPLSAGH 82
           L   ++ L   F +  PP AD+       +  L + +  E+      +C VC    + G 
Sbjct: 185 LDTIITQLLNQFENTGPPPADNE-----KIQALPTIQITEEHVGSGLECPVCKEDYTVGE 244

Query: 83  LVRRLPCRHLFHKDCLDGWLHHLNFNCPLCRSPL 117
            VR+LPC HLFH DC+  WL   +  CP+CR  L
Sbjct: 245 CVRQLPCNHLFHNDCIIPWLEQ-HDTCPVCRKSL 272

[Close]

BLAST of Tan0015556 vs. NCBI nr
Match: KAG7032532.1 (E3 ubiquitin-protein ligase RHA2B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 209.5 bits (532), Expect = 1.8e-50
Identity = 108/140 (77.14%), Postives = 114/140 (81.43%), Query Frame = 0


Query: 1   MGLQSQLNDFSSDSLPLFFLSLLANFLSLLRRFFLSAAPPSADHS---LPHHLHLNRLLS 60
           MGLQSQLNDFSSDSLPLFFLSLLANFLSLLRR FLS+  PS D     L  HLHLNRLLS
Sbjct: 1   MGLQSQLNDFSSDSLPLFFLSLLANFLSLLRRSFLSSTAPSPDSDISPLHQHLHLNRLLS 60

Query: 61  HRYPEDSSAPACDCVVCLSPLSAGHLVRRLPCRHLFHKDCLDGWLHHLNFNCPLCRSPLL 120
           HRY  DS+  A DCVVCL PLSAG+ VRRLPC H+FHKDCLDGWLHHLNFNCPLCRSP+ 
Sbjct: 61  HRYYADSA--ASDCVVCLCPLSAGNPVRRLPCNHIFHKDCLDGWLHHLNFNCPLCRSPIH 120

Query: 121 LDQRVPFTRHRLRLPDHVIA 138
           L QRVPFT H   LP HV+A
Sbjct: 121 LHQRVPFTLHS-PLPHHVLA 137

[Close]

BLAST of Tan0015556 vs. NCBI nr
Match: XP_022006424.1 (E3 ubiquitin-protein ligase RHA2B [Helianthus annuus] >KAF5777337.1 putative transcription factor C2H2 family [Helianthus annuus])

HSP 1 Score: 145.2 bits (365), Expect = 4.1e-31
Identity = 77/135 (57.04%), Postives = 92/135 (68.15%), Query Frame = 0


Query: 1   MGLQSQLNDFSSDSLPLFFLSLLANFLSLLRRF---FLSAAP-PSADH---SLPHHLHLN 60
           MGLQ+ L D SSDSLPL  L+ +A  +S LR     FL  +P PS D    +L HHL+LN
Sbjct: 1   MGLQNHLTDVSSDSLPLLLLATIATAVSYLRSLFFTFLGISPYPSDDPMLLTLSHHLNLN 60

Query: 61  RLLSHRYPEDSSAPACDCVVCLSPLSAGHLVRRLPCRHLFHKDCLDGWLHHLNFNCPLCR 120
            LLS  Y  D      DCVVCL+ L+AG  VR+LPC H+FHK+C DGWLHHLNFNCPLCR
Sbjct: 61  SLLS--YKHDPDPVDSDCVVCLNRLTAGEHVRKLPCHHVFHKECFDGWLHHLNFNCPLCR 120

Query: 121 SPLLLDQRVPFTRHR 129
           SP++ D+RV  TR R
Sbjct: 121 SPVVFDERVVVTRRR 133

[Close]

BLAST of Tan0015556 vs. NCBI nr
Match: KAG2301769.1 (hypothetical protein Bca52824_030420 [Brassica carinata])

HSP 1 Score: 138.3 bits (347), Expect = 5.1e-29
Identity = 70/130 (53.85%), Postives = 86/130 (66.15%), Query Frame = 0


Query: 1   MGLQSQLNDFSSDSLPLFFLSLLANFLSLLRRFFLSAAPPSADHS-------------LP 60
           MGLQ QL+D SSDS+PL  ++LLA F   +R FFL  +    D S             L 
Sbjct: 1   MGLQGQLSDVSSDSIPLMLVALLATFFKHVRSFFLRFSSIDEDASSLSVSSGLTSLAVLA 60

Query: 61  HHLHLNRLLSHRYPEDSSAPACDCVVCLSPLSAGHLVRRLPCRHLFHKDCLDGWLHHLNF 118
             L LNRL S+RY ++++A A DC+VCLS L +G  VR+L CRH+FHK CL+GWL HLNF
Sbjct: 61  DQLKLNRLFSYRYDDNAAAAASDCIVCLSTLKSGEEVRKLGCRHVFHKQCLEGWLQHLNF 120

[Close]

BLAST of Tan0015556 vs. NCBI nr
Match: KAG2302105.1 (hypothetical protein Bca52824_030756 [Brassica carinata])

HSP 1 Score: 136.7 bits (343), Expect = 1.5e-28
Identity = 70/128 (54.69%), Postives = 85/128 (66.41%), Query Frame = 0


Query: 1   MGLQSQLNDFSSDSLPLFFLSLLANFLSLLRRFFL-----SAAPPSADHSLPH------H 60
           MGLQ QL+D SSDS+PL  L+LLA     LR FFL       A PS    L +       
Sbjct: 1   MGLQGQLSDVSSDSIPLMLLALLATLFKHLRSFFLRFSASDDASPSVYSGLANLAILADQ 60

Query: 61  LHLNRLLSHRYPEDSSAPACDCVVCLSPLSAGHLVRRLPCRHLFHKDCLDGWLHHLNFNC 118
           L LNRL S+R+ +D++A A DC+VCLS L  G  VR+L CRH+FHK CL+GW+ HLNFNC
Sbjct: 61  LKLNRLFSYRHADDNTAAASDCIVCLSALKGGEEVRKLDCRHVFHKQCLEGWIQHLNFNC 120

[Close]

BLAST of Tan0015556 vs. NCBI nr
Match: XP_022552698.1 (E3 ubiquitin-protein ligase RHA2B-like [Brassica napus] >XP_022552699.1 E3 ubiquitin-protein ligase RHA2B-like [Brassica napus])

HSP 1 Score: 135.6 bits (340), Expect = 3.3e-28
Identity = 73/133 (54.89%), Postives = 85/133 (63.91%), Query Frame = 0


Query: 1   MGLQSQLNDFSSDSLPLFFLSLLANFLSLLRRFFL----------SAAPPSADHSLPH-- 60
           MGLQ QL+D SSDS+PL  ++LLA     +R FFL            A PSA   L +  
Sbjct: 1   MGLQGQLSDVSSDSIPLMIVALLATLFKHVRSFFLRFSSSSSAVEEVASPSASSGLANLA 60

Query: 61  ----HLHLNRLLSHRYPEDSSAPACDCVVCLSPLSAGHLVRRLPCRHLFHKDCLDGWLHH 118
                L LNRL SHRY  D++A A DC+VCLS L  G  VR+L CRH+FHK CL+GWL H
Sbjct: 61  VLADQLKLNRLFSHRY-ADTAANATDCIVCLSTLKTGEEVRKLGCRHVFHKQCLEGWLQH 120

[Close]

BLAST of Tan0015556 vs. ExPASy TrEMBL
Match: A0A251SN01 (Putative zinc finger, RING/FYVE/PHD-type OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr14g0459201 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 2.0e-31
Identity = 77/135 (57.04%), Postives = 92/135 (68.15%), Query Frame = 0


Query: 1   MGLQSQLNDFSSDSLPLFFLSLLANFLSLLRRF---FLSAAP-PSADH---SLPHHLHLN 60
           MGLQ+ L D SSDSLPL  L+ +A  +S LR     FL  +P PS D    +L HHL+LN
Sbjct: 1   MGLQNHLTDVSSDSLPLLLLATIATAVSYLRSLFFTFLGISPYPSDDPMLLTLSHHLNLN 60

Query: 61  RLLSHRYPEDSSAPACDCVVCLSPLSAGHLVRRLPCRHLFHKDCLDGWLHHLNFNCPLCR 120
            LLS  Y  D      DCVVCL+ L+AG  VR+LPC H+FHK+C DGWLHHLNFNCPLCR
Sbjct: 61  SLLS--YKHDPDPVDSDCVVCLNRLTAGEHVRKLPCHHVFHKECFDGWLHHLNFNCPLCR 120

Query: 121 SPLLLDQRVPFTRHR 129
           SP++ D+RV  TR R
Sbjct: 121 SPVVFDERVVVTRRR 133

[Close]

BLAST of Tan0015556 vs. ExPASy TrEMBL
Match: A0A3P6DE91 (RING-type domain-containing protein OS=Brassica oleracea OX=3712 GN=BOLC2T11000H PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.6e-28
Identity = 73/133 (54.89%), Postives = 85/133 (63.91%), Query Frame = 0


Query: 1   MGLQSQLNDFSSDSLPLFFLSLLANFLSLLRRFFL----------SAAPPSADHSLPH-- 60
           MGLQ QL+D SSDS+PL  ++LLA     +R FFL            A PSA   L +  
Sbjct: 1   MGLQGQLSDVSSDSIPLMLVALLATLFKHVRSFFLRFSSSSSAVEEVASPSASSGLANLA 60

Query: 61  ----HLHLNRLLSHRYPEDSSAPACDCVVCLSPLSAGHLVRRLPCRHLFHKDCLDGWLHH 118
                L LNRL SHRY  D++A A DC+VCLS L  G  VR+L CRH+FHK CL+GWL H
Sbjct: 61  VLADQLKLNRLFSHRY-ADTAANATDCIVCLSTLKTGEEVRKLGCRHVFHKQCLEGWLQH 120

[Close]

BLAST of Tan0015556 vs. ExPASy TrEMBL
Match: W9RAQ2 (E3 ubiquitin-protein ligase RHA2A OS=Morus notabilis OX=981085 GN=L484_025840 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.7e-28
Identity = 73/148 (49.32%), Postives = 90/148 (60.81%), Query Frame = 0


Query: 1   MGLQSQLNDFSSDSLPLFFLSLLANFLSLLRRFFLSAAP------PSADH---------- 60
           MGLQSQLND SSDS+PL  ++++AN +S +R   L   P      P  D           
Sbjct: 1   MGLQSQLNDVSSDSIPLLLVAIIANCVSYVRSVLLGLLPQRFGPEPVDDGLLGSGLAGLI 60

Query: 61  SLPHHLHLNRLLSHRYPEDSSAPACDCVVCLSPLSAGHLVRRLPCRHLFHKDCLDGWLHH 120
            L   L+LNR+ S+RY +  +    DCVVCLS L+ G  VRRL CRH+FHKDC DGWL H
Sbjct: 61  VLAEQLNLNRVFSYRYSDGGAGGGSDCVVCLSTLTPGDQVRRLSCRHVFHKDCFDGWLGH 120

Query: 121 LNFNCPLCRSPLL----LDQRVPFTRHR 129
           LNF+CPLCRSPL+     D+ V  TR R
Sbjct: 121 LNFSCPLCRSPLVSAAAADESVELTRRR 148

[Close]

BLAST of Tan0015556 vs. ExPASy TrEMBL
Match: A0A078HR84 (BnaA09g18490D protein OS=Brassica napus OX=3708 GN=BnaA09g18490D PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 6.0e-28
Identity = 67/132 (50.76%), Postives = 87/132 (65.91%), Query Frame = 0


Query: 1   MGLQSQLNDFSSDSLPLFFLSLLANFLSLLRRFFL---------------SAAPPSADHS 60
           MGLQ QL+D SSDS+PL  ++L+A F   LR FFL               +++  S   +
Sbjct: 1   MGLQGQLSDVSSDSIPLMLVALIATFFKHLRSFFLRFSSSSVVVVEEDASASSVYSGLAN 60

Query: 61  LPHHLHLNRLLSHRYPEDSSAPACDCVVCLSPLSAGHLVRRLPCRHLFHKDCLDGWLHHL 118
           L   L LNRLLS+ Y ++++A A DC+VCLS L  G  VR+L CRH+FHK CL+GW+ HL
Sbjct: 61  LADQLKLNRLLSYLYADNAAAAASDCIVCLSTLKTGEEVRKLDCRHVFHKQCLEGWIQHL 120

[Close]

BLAST of Tan0015556 vs. ExPASy TrEMBL
Match: A0A5C7HJU7 (RING-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_018596 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 7.9e-28
Identity = 78/157 (49.68%), Postives = 92/157 (58.60%), Query Frame = 0


Query: 1   MGLQSQLNDFSSDSLPLFFLSLLANFLSLLRRFFLS---------AAPPSADHS------ 60
           MGLQ QLND SSDS+PL  ++L+ANF++ LR F LS           P   D +      
Sbjct: 58  MGLQGQLNDVSSDSIPLLLVALVANFIANLRSFLLSFFHFMGLTRFDPEHIDPAGLVGHQ 117

Query: 61  ----------LPHHLHLNRLLSHRYPEDSSA-PAC--DCVVCLSPLSAGHLVRRLPCRHL 120
                     L   L+LNR+ S+RY    SA  AC  DCVVCL  L  G  VRRL CRH+
Sbjct: 118 VGSGLAGLIVLAEQLNLNRMFSYRYSSTGSASSACGGDCVVCLCKLRDGDQVRRLECRHV 177

Query: 121 FHKDCLDGWLHHLNFNCPLCRSPLLLDQRVPFTRHRL 130
           FHK+C DGWL HLNFNCPLCRS LL D+ V  TR R+
Sbjct: 178 FHKECFDGWLDHLNFNCPLCRSSLLSDEHVLGTRRRV 214

[Close]

BLAST of Tan0015556 vs. TAIR 10
Match: AT2G01150.1 (RING-H2 finger protein 2B )

HSP 1 Score: 130.6 bits (327), Expect = 9.8e-31
Identity = 70/123 (56.91%), Postives = 84/123 (68.29%), Query Frame = 0


Query: 1   MGLQSQLNDFSSDSLPLFFLSLLANFLSLLRRFFL--SAAPPSADHS----LPHHLHLNR 60
           MGLQ QL+D SSDS+PL  L+LLA F   +R   L  S+AP     S    L   L+LNR
Sbjct: 1   MGLQGQLSDVSSDSIPLMLLALLATFFRHVRSLLLFPSSAPVVVVTSNLSVLADQLNLNR 60

Query: 61  LLSHRYPEDSSAPACDCVVCLSPLSAGHLVRRLPCRHLFHKDCLDGWLHHLNFNCPLCRS 118
           L S+RY +++   A DC+VCLS L  G  VR+L CRH+FHK CL+GWL HLNFNCPLCRS
Sbjct: 61  LFSYRYSDNA---ASDCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRS 120

[Close]

BLAST of Tan0015556 vs. TAIR 10
Match: AT1G15100.1 (RING-H2 finger A2A )

HSP 1 Score: 119.8 bits (299), Expect = 1.7e-27
Identity = 69/142 (48.59%), Postives = 80/142 (56.34%), Query Frame = 0


Query: 1   MGLQSQLNDFSSDSLPLFFLSLLANFLSLLRRFFLSAAPPSADH---------------- 60
           MGLQ QL+D SSDS+PL  LSLLA F++ LR F L     S  +                
Sbjct: 1   MGLQGQLSDVSSDSIPLMLLSLLAVFINHLRSFLLRLTSKSNPNLPVDDVSIASGLANII 60

Query: 61  SLPHHLHLNRLLSHRYPEDSSAPACDCVVCLSPLSAGHLVRRLPCRHLFHKDCLDGWLHH 120
            L   L LNRL S+R   D      DCVVCLS L  G  VR+L CRH+FHK CL+GWLH 
Sbjct: 61  VLADQLSLNRLFSYRC-GDGGGGGSDCVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQ 120

Query: 121 LNFNCPLCRSPLLLDQRVPFTR 127
            NF CPLCRS L+ D  V  T+
Sbjct: 121 FNFTCPLCRSALVSDDCVSKTQ 141

[Close]

BLAST of Tan0015556 vs. TAIR 10
Match: AT2G04240.1 (RING/U-box superfamily protein )

HSP 1 Score: 62.4 bits (150), Expect = 3.3e-10
Identity = 23/49 (46.94%), Postives = 32/49 (65.31%), Query Frame = 0


Query: 70  DCVVCLSPLSAGHLVRRLPCRHLFHKDCLDGWLHHLNFNCPLCRSPLLL 119
           +C VCLS       + +L C HLFHK CL+ W+ + N  CPLCR+PL++
Sbjct: 102 ECSVCLSKFQGDSEINKLKCGHLFHKTCLEKWIDYWNITCPLCRTPLVV 150

[Close]

BLAST of Tan0015556 vs. TAIR 10
Match: AT2G04240.2 (RING/U-box superfamily protein )

HSP 1 Score: 62.4 bits (150), Expect = 3.3e-10
Identity = 23/49 (46.94%), Postives = 32/49 (65.31%), Query Frame = 0


Query: 70  DCVVCLSPLSAGHLVRRLPCRHLFHKDCLDGWLHHLNFNCPLCRSPLLL 119
           +C VCLS       + +L C HLFHK CL+ W+ + N  CPLCR+PL++
Sbjct: 102 ECSVCLSKFQGDSEINKLKCGHLFHKTCLEKWIDYWNITCPLCRTPLVV 150

[Close]

BLAST of Tan0015556 vs. TAIR 10
Match: AT3G47990.1 (SUGAR-INSENSITIVE 3 )

HSP 1 Score: 59.3 bits (142), Expect = 2.8e-09
Identity = 33/86 (38.37%), Postives = 44/86 (51.16%), Query Frame = 0


Query: 34  FLSAAPPSADHSLPHHLHLNRLLSHRYPEDSSAPACDCVVCLSPLSAGHLVRRLPCRHLF 93
           +L+ A   A  +L   L   RL +   P+D      +C++CL     GH VR LPC H F
Sbjct: 204 YLTPAQTEAVEALIQELPKFRLKA--VPDDCG----ECLICLEEFHIGHEVRGLPCAHNF 263

Query: 94  HKDCLDGWLHHLNFNCPLCRSPLLLD 120
           H +C+D WL  LN  CP CR  +  D
Sbjct: 264 HVECIDQWL-RLNVKCPRCRCSVFPD 282

The following BLAST results are available for this feature:

BLAST of Tan0015556 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZU51	1.4e-29	56.91	E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 ...	[more]
Q9ZT50	2.4e-26	48.59	E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana OX=3702 GN=RHA2A PE=1 ...	[more]
Q9SI09	4.6e-09	46.94	Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=X...	[more]
Q8GYT9	3.9e-08	38.37	E3 ubiquitin-protein ligase SIS3 OS=Arabidopsis thaliana OX=3702 GN=SIS3 PE=2 SV...	[more]
Q7T0Q3	5.1e-08	32.98	E3 ubiquitin-protein ligase RNF126-A OS=Xenopus laevis OX=8355 GN=rnf126-a PE=2 ...	[more]

BLAST of Tan0015556 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7032532.1	1.8e-50	77.14	E3 ubiquitin-protein ligase RHA2B, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022006424.1	4.1e-31	57.04	E3 ubiquitin-protein ligase RHA2B [Helianthus annuus] >KAF5777337.1 putative tra...	[more]
KAG2301769.1	5.1e-29	53.85	hypothetical protein Bca52824_030420 [Brassica carinata]	[more]
KAG2302105.1	1.5e-28	54.69	hypothetical protein Bca52824_030756 [Brassica carinata]	[more]
XP_022552698.1	3.3e-28	54.89	E3 ubiquitin-protein ligase RHA2B-like [Brassica napus] >XP_022552699.1 E3 ubiqu...	[more]

BLAST of Tan0015556 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A251SN01	2.0e-31	57.04	Putative zinc finger, RING/FYVE/PHD-type OS=Helianthus annuus OX=4232 GN=HannXRQ...	[more]
A0A3P6DE91	1.6e-28	54.89	RING-type domain-containing protein OS=Brassica oleracea OX=3712 GN=BOLC2T11000H...	[more]
W9RAQ2	2.7e-28	49.32	E3 ubiquitin-protein ligase RHA2A OS=Morus notabilis OX=981085 GN=L484_025840 PE...	[more]
A0A078HR84	6.0e-28	50.76	BnaA09g18490D protein OS=Brassica napus OX=3708 GN=BnaA09g18490D PE=4 SV=1	[more]
A0A5C7HJU7	7.9e-28	49.68	RING-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_01859...	[more]

BLAST of Tan0015556 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G01150.1	9.8e-31	56.91	RING-H2 finger protein 2B	[more]
AT1G15100.1	1.7e-27	48.59	RING-H2 finger A2A	[more]
AT2G04240.1	3.3e-10	46.94	RING/U-box superfamily protein	[more]
AT2G04240.2	3.3e-10	46.94	RING/U-box superfamily protein	[more]
AT3G47990.1	2.8e-09	38.37	SUGAR-INSENSITIVE 3	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 71..112 e-value: 1.9E-6 score: 37.4
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 70..113 e-value: 1.5E-10 score: 41.2
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 71..113 score: 12.504031
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 49..120 e-value: 2.6E-17 score: 63.8
None	No IPR available	PANTHER	PTHR45969:SF5	E3 UBIQUITIN-PROTEIN LIGASE RHA2A	coord: 1..35
None	No IPR available	PANTHER	PTHR45969	RING ZINC FINGER PROTEIN-RELATED	coord: 1..35
None	No IPR available	PANTHER	PTHR45969	RING ZINC FINGER PROTEIN-RELATED	coord: 46..129
None	No IPR available	PANTHER	PTHR45969:SF5	E3 UBIQUITIN-PROTEIN LIGASE RHA2A	coord: 46..129
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 53..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0015556.1	Tan0015556.1	mRNA