Tan0015339 (gene) Snake gourd v1

Overview


Name	Tan0015339
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG01: 27822537 .. 27822944 (+)
RNA-Seq Expression	Tan0015339
Synteny	Tan0015339

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAAAAGTGGACGATGACAAAGATGCTAGATTCAACGGAGATGGAGAAAACAATACTACAACTAGACGATGAGGAATTGGAAGTTGAAGAGAATTTACTTAAATTTTGGCCACAAAGCAAAAAAAAGCAACTCATGATAGACATAAAGAATGGAGTGGAAATCACTTTGTTTGATGTGAGCAAAAATGAAGCTGAGAAAACAACCATAAAAAGGGTGGCATGTGAAGAATTCCATATCAAATGGGACTTTAAAAGCAAAGGGTATATGGTGGGAGATGAAATTTTGATGGGTTGGGATTCTAAAAACGAACGACTATGTTATAGGGTCCTTCCTATTTCTGCTTTGAGAACTCATCCACAAATTGCTGACAATTTTGCAAGTAGTTTCCATCCGGTTGAATAG

mRNA sequence

ATGGCGAAAAAGTGGACGATGACAAAGATGCTAGATTCAACGGAGATGGAGAAAACAATACTACAACTAGACGATGAGGAATTGGAAGTTGAAGAGAATTTACTTAAATTTTGGCCACAAAGCAAAAAAAAGCAACTCATGATAGACATAAAGAATGGAGTGGAAATCACTTTGTTTGATGTGAGCAAAAATGAAGCTGAGAAAACAACCATAAAAAGGGTGGCATGTGAAGAATTCCATATCAAATGGGACTTTAAAAGCAAAGGGTATATGGTGGGAGATGAAATTTTGATGGGTTGGGATTCTAAAAACGAACGACTATGTTATAGGGTCCTTCCTATTTCTGCTTTGAGAACTCATCCACAAATTGCTGACAATTTTGCAAGTAGTTTCCATCCGGTTGAATAG

Coding sequence (CDS)

ATGGCGAAAAAGTGGACGATGACAAAGATGCTAGATTCAACGGAGATGGAGAAAACAATACTACAACTAGACGATGAGGAATTGGAAGTTGAAGAGAATTTACTTAAATTTTGGCCACAAAGCAAAAAAAAGCAACTCATGATAGACATAAAGAATGGAGTGGAAATCACTTTGTTTGATGTGAGCAAAAATGAAGCTGAGAAAACAACCATAAAAAGGGTGGCATGTGAAGAATTCCATATCAAATGGGACTTTAAAAGCAAAGGGTATATGGTGGGAGATGAAATTTTGATGGGTTGGGATTCTAAAAACGAACGACTATGTTATAGGGTCCTTCCTATTTCTGCTTTGAGAACTCATCCACAAATTGCTGACAATTTTGCAAGTAGTTTCCATCCGGTTGAATAG

Protein sequence

MAKKWTMTKMLDSTEMEKTILQLDDEELEVEENLLKFWPQSKKKQLMIDIKNGVEITLFDVSKNEAEKTTIKRVACEEFHIKWDFKSKGYMVGDEILMGWDSKNERLCYRVLPISALRTHPQIADNFASSFHPVE

Homology

[Close]

BLAST of Tan0015339 vs. NCBI nr
Match: KAG6575832.1 (hypothetical protein SDJN03_26471, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 97.4 bits (241), Expect = 9.8e-17
Identity = 51/131 (38.93%), Postives = 78/131 (59.54%), Query Frame = 0


Query: 1   MAKKWTMTKMLDSTEMEKTI-LQLDDEELEVEENLLKFWPQSKKKQLMIDIKNGVEITLF 60
           M ++WTM K L   +M   + L+ DD + ++  NL ++W +SK + L   I N  +ITLF
Sbjct: 1   MTERWTMIKKLQEADMNGLLQLREDDVDTDINTNLFRWWSRSKVRDLKKQIGNEAKITLF 60

Query: 61  DVSKNEAEKTTIKRVACEEFHIKWDFKSKGYMVGDEILMGWDSKNERLCYRVLPISALRT 120
           D + NE   TTI+ +    +HI+WD K+K Y  G ++LMGWD K  RL Y+VL I     
Sbjct: 61  DENTNEVMHTTIRWLGTPRYHIEWDVKNKPYASGQDMLMGWDLKYNRLAYKVLQI----P 120

Query: 121 HPQIADNFASS 131
            P+++D  +S+
Sbjct: 121 FPEMSDAGSST 127

[Close]

BLAST of Tan0015339 vs. NCBI nr
Match: KAG6575830.1 (hypothetical protein SDJN03_26469, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 92.0 bits (227), Expect = 4.1e-15
Identity = 45/132 (34.09%), Postives = 81/132 (61.36%), Query Frame = 0


Query: 1   MAKKWTMTKMLDSTEMEKTI-LQLDDEELEVEENLLKFWPQSKKKQLMIDIKNGVEITLF 60
           MA  WTM K L+  +M   + L+ DDE+ ++  NL  +WP+SK + L   + + V I L+
Sbjct: 1   MAGDWTMIKKLEDADMNGLLQLREDDEDADIRANLFNWWPRSKVRDLKRVVGSEVRIILY 60

Query: 61  DVSKNEAEKTTIKRVACEEFHIKWDFKSKGYMVGDEILMGWDSKNERLCYRVLPISALRT 120
           DV+ ++A +TT++ +    +HI+WD ++K Y  GD++LM WD +  RL Y+++       
Sbjct: 61  DVNMDQAIQTTMRWLGMARYHIEWDIQNKPYSSGDDMLMFWDLRYNRLAYKIIQ----TY 120

Query: 121 HPQIADNFASSF 132
           +P+I+D  + ++
Sbjct: 121 YPEISDACSGTY 128

[Close]

BLAST of Tan0015339 vs. NCBI nr
Match: KAE8651896.1 (hypothetical protein Csa_006487 [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 8.3e-08
Identity = 46/132 (34.85%), Postives = 77/132 (58.33%), Query Frame = 0


Query: 3   KKWTMTKMLDSTEMEKTILQLDDEELEVEEN-LLKFWPQSKKKQLMIDIKNGVEITLFDV 62
           K W++T+ LD +  ++  L+LD  E+  E + LL ++P+   K          +IT+FDV
Sbjct: 6   KPWSITETLDGS--KELGLKLDAAEMLFESSFLLNYFPEQTGK---------AKITMFDV 65

Query: 63  SKNEAEKTTIKR-VACEEFHIKW--DF-KSKGYMVGDEILMGWDSKNERLCYRVLPISAL 122
              ++ K T++R  A  +F I W  DF K+  Y  GDEIL+ W+ + + LC+ ++  SAL
Sbjct: 66  VSEKSFKATMERKSASNQFLITWKKDFVKNINYKNGDEILLYWEPQIKSLCFEIVKCSAL 125

Query: 123 RTHPQIADNFAS 130
           RT+PQ++  + S
Sbjct: 126 RTYPQMSGQYRS 126

[Close]

BLAST of Tan0015339 vs. NCBI nr
Match: KAE8651895.1 (hypothetical protein Csa_006112 [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 8.3e-08
Identity = 46/132 (34.85%), Postives = 77/132 (58.33%), Query Frame = 0


Query: 3   KKWTMTKMLDSTEMEKTILQLDDEELEVEEN-LLKFWPQSKKKQLMIDIKNGVEITLFDV 62
           K W++T+ LD +  ++  L+LD  E+  E + LL ++P+   K          +IT+FDV
Sbjct: 6   KPWSITETLDGS--KELGLKLDAAEMLFESSFLLNYFPEQSGK---------AKITMFDV 65

Query: 63  SKNEAEKTTIKR-VACEEFHIKW--DF-KSKGYMVGDEILMGWDSKNERLCYRVLPISAL 122
              ++ K T++R  A  +F I W  DF K+  Y  GDEIL+ W+ + + LC+ ++  SAL
Sbjct: 66  VSEKSFKATMERKSASNQFLITWKKDFVKNINYKSGDEILLYWEPQIKSLCFEIVRCSAL 125

Query: 123 RTHPQIADNFAS 130
           RT+PQ++  + S
Sbjct: 126 RTYPQMSGQYHS 126

[Close]

BLAST of Tan0015339 vs. ExPASy TrEMBL
Match: A0A0A0LJ50 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G270130 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.1e-08
Identity = 46/132 (34.85%), Postives = 77/132 (58.33%), Query Frame = 0


Query: 3   KKWTMTKMLDSTEMEKTILQLDDEELEVEEN-LLKFWPQSKKKQLMIDIKNGVEITLFDV 62
           K W++T+ LD +  ++  L+LD  E+  E + LL ++P+   K          +IT+FDV
Sbjct: 6   KPWSITETLDGS--KELGLKLDAAEMLFESSFLLNYFPEQSGK---------AKITMFDV 65

Query: 63  SKNEAEKTTIKR-VACEEFHIKW--DF-KSKGYMVGDEILMGWDSKNERLCYRVLPISAL 122
              ++ K T++R  A  +F I W  DF K+  Y  GDEIL+ W+ + + LC+ ++  SAL
Sbjct: 66  VSEKSFKATMERKSASNQFLITWKKDFVKNINYKNGDEILLYWEPQIKSLCFEIVKCSAL 125

Query: 123 RTHPQIADNFAS 130
           RT+PQ++  + S
Sbjct: 126 RTYPQMSGQYRS 126

[Close]

BLAST of Tan0015339 vs. ExPASy TrEMBL
Match: A0A0A0LD04 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G401960 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 4.0e-08
Identity = 46/132 (34.85%), Postives = 77/132 (58.33%), Query Frame = 0


Query: 3   KKWTMTKMLDSTEMEKTILQLDDEELEVEEN-LLKFWPQSKKKQLMIDIKNGVEITLFDV 62
           K W++T+ LD +  ++  L+LD  E+  E + LL ++P+   K          +IT+FDV
Sbjct: 6   KPWSITETLDGS--KELGLKLDAAEMLFESSFLLNYFPEQSGK---------AKITMFDV 65

Query: 63  SKNEAEKTTIKR-VACEEFHIKW--DF-KSKGYMVGDEILMGWDSKNERLCYRVLPISAL 122
              ++ K T++R  A  +F I W  DF K+  Y  GDEIL+ W+ + + LC+ ++  SAL
Sbjct: 66  VSEKSFKATMERKSASNQFLITWKKDFVKNINYKSGDEILLYWEPQIKSLCFEIVRCSAL 125

Query: 123 RTHPQIADNFAS 130
           RT+PQ++  + S
Sbjct: 126 RTYPQMSGQYHS 126

The following BLAST results are available for this feature:

BLAST of Tan0015339 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0015339 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6575832.1	9.8e-17	38.93	hypothetical protein SDJN03_26471, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6575830.1	4.1e-15	34.09	hypothetical protein SDJN03_26469, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8651896.1	8.3e-08	34.85	hypothetical protein Csa_006487 [Cucumis sativus]	[more]
KAE8651895.1	8.3e-08	34.85	hypothetical protein Csa_006112 [Cucumis sativus]	[more]

BLAST of Tan0015339 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJ50	3.1e-08	34.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G270130 PE=4 SV=1	[more]
A0A0A0LD04	4.0e-08	34.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G401960 PE=4 SV=1	[more]

BLAST of Tan0015339 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0015339.1	Tan0015339.1	mRNA