Tan0015058 (gene) Snake gourd v1

Overview


Name	Tan0015058
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	CLAVATA3/ESR (CLE)-related protein 27
Location	LG04: 7293716 .. 7294338 (+)
RNA-Seq Expression	Tan0015058
Synteny	Tan0015058

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCTGCTATTCCCTCATCACGTGGGCCACTGTCGTCCCTTTCTCTCTCTCTGAGTCCCATTATAGCCGTCTTTTCTTTGCTTTTATATTATAATTTATATCTCACAGCTATAAGCCTCAAATAAATAGAAAGAACAAAGCCAATATTTGGGTACGACATTTTATTTAAACATGTCGAGCCAGATAGAGGAGGGATTTGAGAGCTATTGAAGCCAAGTTTCTTCGAATTTCATTCTCGTTTTTTCTTTTTCTTCCGGCCGCCCGGCCAGCCATGTGTACCAGAAGATCAATCGCCACTTCCTCTTCTTTTGCCATGCTGATTTTCATCCTGTGGCTGTCGCAGATTTGGGTTTGTTGTCACTCTCAAGCTACAGCTTCAAGGATTTTCCCACCGCCGCCGCACACGGCCACCGGCGACGGAAAAGACAAAGCCATCGCCAACGCCAACGCCAGGTATGAACTTCTTCAAAAATACTTCAAGGACAGAGCCTTTTTCGACCGCCACCGCCACGATGAAGGAATTGAAGATAGTAAACGGAAAATACCCAGTTGTCCAGATCCTCTTCATAATTAGTAGGATTAATTCATTTTTTTTTCTACCTCTCTTTCTTGTCATTATTTTTC

mRNA sequence

GCCTGCTATTCCCTCATCACGTGGGCCACTGTCGTCCCTTTCTCTCTCTCTGAGTCCCATTATAGCCGTCTTTTCTTTGCTTTTATATTATAATTTATATCTCACAGCTATAAGCCTCAAATAAATAGAAAGAACAAAGCCAATATTTGGGTACGACATTTTATTTAAACATGTCGAGCCAGATAGAGGAGGGATTTGAGAGCTATTGAAGCCAAGTTTCTTCGAATTTCATTCTCGTTTTTTCTTTTTCTTCCGGCCGCCCGGCCAGCCATGTGTACCAGAAGATCAATCGCCACTTCCTCTTCTTTTGCCATGCTGATTTTCATCCTGTGGCTGTCGCAGATTTGGGTTTGTTGTCACTCTCAAGCTACAGCTTCAAGGATTTTCCCACCGCCGCCGCACACGGCCACCGGCGACGGAAAAGACAAAGCCATCGCCAACGCCAACGCCAGGTATGAACTTCTTCAAAAATACTTCAAGGACAGAGCCTTTTTCGACCGCCACCGCCACGATGAAGGAATTGAAGATAGTAAACGGAAAATACCCAGTTGTCCAGATCCTCTTCATAATTAGTAGGATTAATTCATTTTTTTTTCTACCTCTCTTTCTTGTCATTATTTTTC

Coding sequence (CDS)

ATGTGTACCAGAAGATCAATCGCCACTTCCTCTTCTTTTGCCATGCTGATTTTCATCCTGTGGCTGTCGCAGATTTGGGTTTGTTGTCACTCTCAAGCTACAGCTTCAAGGATTTTCCCACCGCCGCCGCACACGGCCACCGGCGACGGAAAAGACAAAGCCATCGCCAACGCCAACGCCAGGTATGAACTTCTTCAAAAATACTTCAAGGACAGAGCCTTTTTCGACCGCCACCGCCACGATGAAGGAATTGAAGATAGTAAACGGAAAATACCCAGTTGTCCAGATCCTCTTCATAATTAG

Protein sequence

MCTRRSIATSSSFAMLIFILWLSQIWVCCHSQATASRIFPPPPHTATGDGKDKAIANANARYELLQKYFKDRAFFDRHRHDEGIEDSKRKIPSCPDPLHN

Homology

[Close]

BLAST of Tan0015058 vs. ExPASy Swiss-Prot
Match: Q9LUA1 (CLAVATA3/ESR (CLE)-related protein 27 OS=Arabidopsis thaliana OX=3702 GN=CLE27 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 3.3e-04
Identity = 31/92 (33.70%), Postives = 52/92 (56.52%), Query Frame = 0


Query: 10  SSSFAMLIFILWLSQIWVCCHSQATASRIFPPPPHTATGDGKDKAIANANARYELLQKYF 69
           +++  M+I + ++  ++ C +S+  A RIFP  P  A+G  +++         +L++KYF
Sbjct: 12  TTTLLMVILLSYMLHLF-CVYSRVGAIRIFPETP--ASGKRQEE---------DLMKKYF 71

Query: 70  KDRAFFDRHRH-DEGIEDSKRKIPSCPDPLHN 101
               F        +GI +SKR +PSCPDPLHN
Sbjct: 72  GAGKFPPVDSFVGKGISESKRIVPSCPDPLHN 91

[Close]

BLAST of Tan0015058 vs. NCBI nr
Match: KAG7032076.1 (CLAVATA3/ESR (CLE)-related protein 43, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 142.1 bits (357), Expect = 2.6e-30
Identity = 76/104 (73.08%), Postives = 84/104 (80.77%), Query Frame = 0


Query: 1   MCTRR-SIATSSSFAMLIFILWLSQIWVCCHSQATASRIF-PPPPHTA--TGDGKDKAIA 60
           MCTRR + ++SSSFA+LIFILW+SQIWVC H QA ASRIF PPPPHTA  T  G  K  A
Sbjct: 1   MCTRRIATSSSSSFALLIFILWVSQIWVCSHCQARASRIFPPPPPHTADTTLTGDQKYNA 60

Query: 61  NANARYELLQKYFKDRAFFDRHRHDEGIEDSKRKIPSCPDPLHN 101
           NANA  ELL+KYFK +A FDRHR DEG EDSKR+IPSCPDPLHN
Sbjct: 61  NANAERELLRKYFKGKA-FDRHRRDEGFEDSKRRIPSCPDPLHN 103

[Close]

BLAST of Tan0015058 vs. NCBI nr
Match: KAG6601288.1 (CLAVATA3/ESR (CLE)-related protein 43, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 142.1 bits (357), Expect = 2.6e-30
Identity = 76/104 (73.08%), Postives = 84/104 (80.77%), Query Frame = 0


Query: 1   MCTRR-SIATSSSFAMLIFILWLSQIWVCCHSQATASRIF-PPPPHTA--TGDGKDKAIA 60
           MCTRR + ++SSSFA+LIFILW+SQIWVC H QA ASRIF PPPPHTA  T  G  K  A
Sbjct: 12  MCTRRIATSSSSSFALLIFILWVSQIWVCSHCQARASRIFPPPPPHTADTTLTGDQKYNA 71

Query: 61  NANARYELLQKYFKDRAFFDRHRHDEGIEDSKRKIPSCPDPLHN 101
           NANA  ELL+KYFK +A FDRHR DEG EDSKR+IPSCPDPLHN
Sbjct: 72  NANAERELLRKYFKGKA-FDRHRRDEGFEDSKRRIPSCPDPLHN 114

[Close]

BLAST of Tan0015058 vs. NCBI nr
Match: KAG6573960.1 (CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 140.2 bits (352), Expect = 9.7e-30
Identity = 73/101 (72.28%), Postives = 76/101 (75.25%), Query Frame = 0


Query: 1   MCTRRSIATSSSFAMLIFILWLSQIWV-CCHSQATASRIFPPPPHTATGDGKDKAIANAN 60
           MCTRR IA SSSFA+LI ILW+SQIWV CC SQA ASRIFPPPP             +AN
Sbjct: 1   MCTRR-IAASSSFAILILILWVSQIWVFCCFSQARASRIFPPPPPPPPPPHTTDKTDHAN 60

Query: 61  ARYELLQKYFKDRAFFDRHRHDEGIEDSKRKIPSCPDPLHN 101
            RYELLQKYFKDRAF D HRH EG  DSKRKIPSCPDPLHN
Sbjct: 61  RRYELLQKYFKDRAFLDPHRHHEGFVDSKRKIPSCPDPLHN 100

[Close]

BLAST of Tan0015058 vs. NCBI nr
Match: KGN52083.1 (hypothetical protein Csa_008231 [Cucumis sativus])

HSP 1 Score: 132.9 bits (333), Expect = 1.6e-27
Identity = 66/101 (65.35%), Postives = 77/101 (76.24%), Query Frame = 0


Query: 3   TRRSIATSSSFAMLIFILWLSQIWVCCHSQATASRIFPPPPHTATGDGKDKAIANA---N 62
           T  S +++S+FA+LI ILW+SQIWVCCH QA ASRIFPPPP        DK+++     N
Sbjct: 8   TSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSLSGEEKDN 67

Query: 63  ARYELLQKYFKDRAFFDRHRHDEGIEDSKRKIPSCPDPLHN 101
           A+ +LLQKYF  RA FDRHRHDEG EDSKRKIPSCPDPLHN
Sbjct: 68  AKNDLLQKYFNGRA-FDRHRHDEGFEDSKRKIPSCPDPLHN 107

[Close]

BLAST of Tan0015058 vs. NCBI nr
Match: KAG7015490.1 (hypothetical protein SDJN02_23126, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 107.8 bits (268), Expect = 5.3e-20
Identity = 59/90 (65.56%), Postives = 64/90 (71.11%), Query Frame = 0


Query: 1  MCTRRSIATSSSFAMLIFILWLSQIWV-CCHSQATASRIFPPPPHTATGDGKDKAIANAN 60
          MCTRR IA SSSFA+LI ILW+SQIWV CC SQA ASRIFPPPP             +AN
Sbjct: 1  MCTRR-IAASSSFAILILILWVSQIWVFCCFSQARASRIFPPPPPPPPPLHTTDKTDHAN 60

Query: 61 ARYELLQKYFKDRAFFDRHRHDEGIEDSKR 90
           RYELLQKYFKDRAF D HRH EG  D ++
Sbjct: 61 RRYELLQKYFKDRAFLDPHRHHEGFVDIRQ 89

[Close]

BLAST of Tan0015058 vs. ExPASy TrEMBL
Match: A0A0A0KR66 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G609690 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 7.5e-28
Identity = 66/101 (65.35%), Postives = 77/101 (76.24%), Query Frame = 0


Query: 3   TRRSIATSSSFAMLIFILWLSQIWVCCHSQATASRIFPPPPHTATGDGKDKAIANA---N 62
           T  S +++S+FA+LI ILW+SQIWVCCH QA ASRIFPPPP        DK+++     N
Sbjct: 8   TSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSLSGEEKDN 67

Query: 63  ARYELLQKYFKDRAFFDRHRHDEGIEDSKRKIPSCPDPLHN 101
           A+ +LLQKYF  RA FDRHRHDEG EDSKRKIPSCPDPLHN
Sbjct: 68  AKNDLLQKYFNGRA-FDRHRHDEGFEDSKRKIPSCPDPLHN 107

[Close]

BLAST of Tan0015058 vs. ExPASy TrEMBL
Match: A0A6J1DAV9 (uncharacterized protein LOC111018633 OS=Momordica charantia OX=3673 GN=LOC111018633 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.4e-18
Identity = 59/99 (59.60%), Postives = 68/99 (68.69%), Query Frame = 0


Query: 1  MCTRRSIATS---SSFAMLIFILWLSQIWVCCHSQATASRIFPPPPHTATGDGKDKAIAN 60
          MCTRR  A S   SSFA+LI ILW+SQIWVCCH QA ASRI PPP    TGD K     +
Sbjct: 1  MCTRRIAAVSSSASSFAILILILWVSQIWVCCHCQARASRILPPP---LTGDAKH----D 60

Query: 61 ANARYELLQKYFKDRAFFDRHRHDEGIEDSKRKIPSCPD 97
          A+ + EL+QKY + RA  DRH   EG EDSKR++PSC D
Sbjct: 61 ASGKNELVQKYLRGRA-SDRH---EGFEDSKRRVPSCSD 88

[Close]

BLAST of Tan0015058 vs. ExPASy TrEMBL
Match: A0A072VRB0 (Clavata3/ESR (CLE) gene family member MtCLE03 OS=Medicago truncatula OX=3880 GN=MTR_1g110820 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 6.0e-09
Identity = 45/97 (46.39%), Postives = 54/97 (55.67%), Query Frame = 0


Query: 13  FAMLIFI-LWLSQIWVCCHS-QATASRIFPPPPHTATGDGKDKAIANANA----RYELLQ 72
           F+M++F+   L Q+WVCC S Q  A RIFP         G D A    N       +LL 
Sbjct: 12  FSMVMFLATTLLQMWVCCQSCQVGAIRIFP---------GNDVANVEFNQDVMHNKDLLN 71

Query: 73  KYFKDRAFFDRHRHDE---GIEDSKRKIPSCPDPLHN 101
           KYFK R FF     +E   G +DSKRK+PSCPDPLHN
Sbjct: 72  KYFKGRTFFGSSNKNETQMGFDDSKRKVPSCPDPLHN 99

[Close]

BLAST of Tan0015058 vs. ExPASy TrEMBL
Match: A0A061E6F8 (Clavata3/esr-related 43, putative OS=Theobroma cacao OX=3641 GN=TCM_009879 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.0e-08
Identity = 37/94 (39.36%), Postives = 56/94 (59.57%), Query Frame = 0


Query: 12  SFAMLIFILWLSQIWVCCHSQATASRIFPPPPHTATGDG-----KDKAIANANARYELLQ 71
           S  +++ I++  QIWVCC  +A A RI P       G+G     + + + +   + +L Q
Sbjct: 14  SSVVVLLIIFFLQIWVCCDCRAGAIRILP-------GNGMRKMTESQGMKDNKGKGDLFQ 73

Query: 72  KYFKDRAFFDRHRHDEGIEDSKRKIPSCPDPLHN 101
           KYF  R+ F  ++ D G E+SKR++PSCPDPLHN
Sbjct: 74  KYFNGRS-FSFNKTDRGFEESKRRVPSCPDPLHN 99

[Close]

BLAST of Tan0015058 vs. ExPASy TrEMBL
Match: A0A2C9VNI0 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G068400 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.7e-08
Identity = 40/100 (40.00%), Postives = 62/100 (62.00%), Query Frame = 0


Query: 3   TRRSIATSSSF-AMLIFILWLSQIWVCCHSQATASRIFPPPPHTATGDGKD-KAIANANA 62
           +RRSI  SSS  A+++F++++ QIWVC   +A A RIFP     +    ++     N   
Sbjct: 6   SRRSIMYSSSLVALVVFLIFMLQIWVCSDCKAGAIRIFPDNGMPSKLKHRNITTTDNKAT 65

Query: 63  RYELLQKYFKDRAFFDRHRHDEGIEDSKRKIPSCPDPLHN 101
           + +LL+K+F  RA    +   +G E++KR++PSCPDPLHN
Sbjct: 66  KQDLLRKFFNGRA-SSFNSSKKGFEENKRRVPSCPDPLHN 104

[Close]

BLAST of Tan0015058 vs. TAIR 10
Match: AT3G25905.1 (CLAVATA3/ESR-RELATED 27 )

HSP 1 Score: 45.8 bits (107), Expect = 2.3e-05
Identity = 31/92 (33.70%), Postives = 52/92 (56.52%), Query Frame = 0


Query: 10  SSSFAMLIFILWLSQIWVCCHSQATASRIFPPPPHTATGDGKDKAIANANARYELLQKYF 69
           +++  M+I + ++  ++ C +S+  A RIFP  P  A+G  +++         +L++KYF
Sbjct: 12  TTTLLMVILLSYMLHLF-CVYSRVGAIRIFPETP--ASGKRQEE---------DLMKKYF 71

Query: 70  KDRAFFDRHRH-DEGIEDSKRKIPSCPDPLHN 101
               F        +GI +SKR +PSCPDPLHN
Sbjct: 72  GAGKFPPVDSFVGKGISESKRIVPSCPDPLHN 91

The following BLAST results are available for this feature:

BLAST of Tan0015058 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LUA1	3.3e-04	33.70	CLAVATA3/ESR (CLE)-related protein 27 OS=Arabidopsis thaliana OX=3702 GN=CLE27 P...	[more]

BLAST of Tan0015058 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7032076.1	2.6e-30	73.08	CLAVATA3/ESR (CLE)-related protein 43, partial [Cucurbita argyrosperma subsp. ar...	[more]
KAG6601288.1	2.6e-30	73.08	CLAVATA3/ESR (CLE)-related protein 43, partial [Cucurbita argyrosperma subsp. so...	[more]
KAG6573960.1	9.7e-30	72.28	CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. so...	[more]
KGN52083.1	1.6e-27	65.35	hypothetical protein Csa_008231 [Cucumis sativus]	[more]
KAG7015490.1	5.3e-20	65.56	hypothetical protein SDJN02_23126, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Tan0015058 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KR66	7.5e-28	65.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G609690 PE=4 SV=1	[more]
A0A6J1DAV9	2.4e-18	59.60	uncharacterized protein LOC111018633 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A072VRB0	6.0e-09	46.39	Clavata3/ESR (CLE) gene family member MtCLE03 OS=Medicago truncatula OX=3880 GN=...	[more]
A0A061E6F8	1.0e-08	39.36	Clavata3/esr-related 43, putative OS=Theobroma cacao OX=3641 GN=TCM_009879 PE=4 ...	[more]
A0A2C9VNI0	1.7e-08	40.00	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G068400 PE=4 SV=...	[more]

BLAST of Tan0015058 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G25905.1	2.3e-05	33.70	CLAVATA3/ESR-RELATED 27	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37184:SF2	CLAVATA3/ESR (CLE)-RELATED PROTEIN 27	coord: 8..100
IPR040274	CLAVATA3/ESR (CLE)-related protein 27/43	PANTHER	PTHR37184	CLAVATA3/ESR (CLE)-RELATED PROTEIN 27	coord: 8..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0015058.1	Tan0015058.1	mRNA