Tan0015018 (gene) Snake gourd v1

Overview
NameTan0015018
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionEPIDERMAL PATTERNING FACTOR-like protein 9
LocationLG06: 12444938 .. 12446238 (+)
RNA-Seq ExpressionTan0015018
SyntenyTan0015018
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAAAGCTGCAAAACCAGTTTCAGTCCTCCTTCTGCTTCTTCTAACCCTAATTATGATCTCTTTTTTCTCAAAAGTGGCAGTACAAGGTCTCTTATTAATTTTCTTCTCCCCATTTTTAGCTTCCTCTTCTCTTCATTTTGACCTTATTCTTCTCTCCATATCTTTTTTCGAGTTTCAGGATTCTCAACTAGAGATGAGCTTTTGGCTAAACTACCACCTCCATTCTCTTCTATACAAACAACAATCAACTTCCAGGTTAGTCGTTGGCTAAATATAACTTATTTATCATATACAAAACAATATATCTTTTTCAAATTTCACTTTTACAGACTAACCTCGTGCTAATTTCTTGTTCTTTGTTTCTCTTTTTTTCTTTTCCCATACTAGTTTTATTTTGTGTTTATAATATAACTTTTTGTCCCTTCAATTGAAGTTTAAATTATATATATTGGTGTTTCAAGTTTTACCTAATTGCACATTTTGTTTGAGTTGGCTTAACTTTGGAAACAAAGTTTTTTTTTTTTTTGTCTAGTTAAAATTTTTAAACTAAAACTTGAAATAGACACTTCTTGTTTTCATTTTTATATAATTAATAAAGCTCTATATGAACAAATGTCTATGTCACCTATATAATAAGTGTTAAGTTTCTAAATGTATTTAGTTTTTTTAATGATAAATAAAAATGAGTATAAGGAATAAAATAGTTTTTTCCCTTCTCTTAAAAGTTCTATGACTTAAAATAAAATAATCGTCAGTTTAAGGACCAAAATAAAATAAATATTGAGATTCTCAACTAAAACGAAAAAAGAAAAAAAAAACTTTGAAAAAAATATATTATTAGGATCTTTATTCCCTTTCAATTGTTTTATTTTCCAAAATGTTACGTACCTAAATACAACTCAATTAATTAGGTCAAGAAACTAATTCTTTTTTTTTTTTGAGTCAACAACATAAGAAGGTAGGAGGTTTAAACTTCCTACTCTTAGTCAAGAATATATATAACTAAACCAATTGAGTTATGGTCGAATTGACTCTAGACCCACACCTATAACATTATTTTATTTTAGAGAGAAAAGAAAAGGTGTAATTGTGTGTTTCATGCAAATTTGAAAACTTCAGGTCAAAAATAAAATGTTGAGAAATTCAAGAAGATTGATGATTGGTTCAACAGCACCAATATGTACTTATAATGAATGTAGAAGCTGCAAATACAAGTGCAGAGCTGAGCAAGTACCAGTTGAAGGCAATGACCCTATCAATAGTGCTTATCATTATAGATGTGTTTGTCATAGGTAA

mRNA sequence

ATGGCAAAAGCTGCAAAACCAGTTTCAGTCCTCCTTCTGCTTCTTCTAACCCTAATTATGATCTCTTTTTTCTCAAAAGTGGCAGTACAAGGATTCTCAACTAGAGATGAGCTTTTGGCTAAACTACCACCTCCATTCTCTTCTATACAAACAACAATCAACTTCCAGGTCAAAAATAAAATGTTGAGAAATTCAAGAAGATTGATGATTGGTTCAACAGCACCAATATGTACTTATAATGAATGTAGAAGCTGCAAATACAAGTGCAGAGCTGAGCAAGTACCAGTTGAAGGCAATGACCCTATCAATAGTGCTTATCATTATAGATGTGTTTGTCATAGGTAA

Coding sequence (CDS)

ATGGCAAAAGCTGCAAAACCAGTTTCAGTCCTCCTTCTGCTTCTTCTAACCCTAATTATGATCTCTTTTTTCTCAAAAGTGGCAGTACAAGGATTCTCAACTAGAGATGAGCTTTTGGCTAAACTACCACCTCCATTCTCTTCTATACAAACAACAATCAACTTCCAGGTCAAAAATAAAATGTTGAGAAATTCAAGAAGATTGATGATTGGTTCAACAGCACCAATATGTACTTATAATGAATGTAGAAGCTGCAAATACAAGTGCAGAGCTGAGCAAGTACCAGTTGAAGGCAATGACCCTATCAATAGTGCTTATCATTATAGATGTGTTTGTCATAGGTAA

Protein sequence

MAKAAKPVSVLLLLLLTLIMISFFSKVAVQGFSTRDELLAKLPPPFSSIQTTINFQVKNKMLRNSRRLMIGSTAPICTYNECRSCKYKCRAEQVPVEGNDPINSAYHYRCVCHR
Homology
BLAST of Tan0015018 vs. ExPASy Swiss-Prot
Match: Q9SV72 (EPIDERMAL PATTERNING FACTOR-like protein 9 OS=Arabidopsis thaliana OX=3702 GN=EPFL9 PE=1 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.5e-24
Identity = 49/67 (73.13%), Postives = 56/67 (83.58%), Query Frame = 0

Query: 48  SIQTTINFQVKNKMLRNSRRLMIGSTAPICTYNECRSCKYKCRAEQVPVEGNDPINSAYH 107
           SI+ T++   +  +L + RR MIGSTAP CTYNECR C+YKCRAEQVPVEGNDPINSAYH
Sbjct: 36  SIENTVSLLPQVHLLNSRRRHMIGSTAPTCTYNECRGCRYKCRAEQVPVEGNDPINSAYH 95

Query: 108 YRCVCHR 115
           YRCVCHR
Sbjct: 96  YRCVCHR 102

BLAST of Tan0015018 vs. NCBI nr
Match: XP_038899071.1 (EPIDERMAL PATTERNING FACTOR-like protein 9 [Benincasa hispida])

HSP 1 Score: 170.6 bits (431), Expect = 7.7e-39
Identity = 89/114 (78.07%), Postives = 94/114 (82.46%), Query Frame = 0

Query: 1   MAKAAKPVSVLLLLLLTLIMISFFSKVAVQGFSTRDELLAKLPPPFSSIQTTINFQVKNK 60
           MAKAAKPVSV LLLLLTLIM   FS +AVQGFSTR       PP F S+Q TI  + KN+
Sbjct: 1   MAKAAKPVSV-LLLLLTLIMTFLFSTMAVQGFSTRH------PPQFFSLQATIASEGKNE 60

Query: 61  MLRNSRRLMIGSTAPICTYNECRSCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 115
            +RNSRRLMIGSTAPICTYNECR CKYKCRAEQVPVEGNDPINSAYHYRCVCHR
Sbjct: 61  KMRNSRRLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 107

BLAST of Tan0015018 vs. NCBI nr
Match: XP_022156765.1 (uncharacterized protein LOC111023601 [Momordica charantia])

HSP 1 Score: 160.6 bits (405), Expect = 7.9e-36
Identity = 92/119 (77.31%), Postives = 98/119 (82.35%), Query Frame = 0

Query: 1   MAKAAKPVSVLLLLLLTLIMISFFSKVAVQGFSTRDE--LLAK-LPPPFSSIQTTINFQV 60
           MAKAAKP SV LLLLLTLI++     VAVQGF+T ++  LLAK LPP FSS+ T  N Q 
Sbjct: 1   MAKAAKPASV-LLLLLTLIIV-----VAVQGFTTGEDELLLAKALPPQFSSVSTMAN-QG 60

Query: 61  KNKMLRNS--RRLMIGSTAPICTYNECRSCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 115
           KNKMLRNS  RRLMIGSTAP CTYNECR CKYKCRAEQVPVEGNDPINSAYHYRCVCHR
Sbjct: 61  KNKMLRNSRTRRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 112

BLAST of Tan0015018 vs. NCBI nr
Match: XP_022959844.1 (EPIDERMAL PATTERNING FACTOR-like protein 9 [Cucurbita moschata])

HSP 1 Score: 160.6 bits (405), Expect = 7.9e-36
Identity = 85/115 (73.91%), Postives = 93/115 (80.87%), Query Frame = 0

Query: 1   MAKAAKPVSVLLLLLLTLIMISFFSKVAVQG-FSTRDELLAKLPPPFSSIQTTINFQVKN 60
           MAKAAKP+  LLLLLL LI+ S  S +A++G FST DEL AK  P F S+QTTI  +   
Sbjct: 1   MAKAAKPLLRLLLLLLALILCSLCSTMALKGRFSTEDELFAKPLPQFRSVQTTIAPE--- 60

Query: 61  KMLRNSRRLMIGSTAPICTYNECRSCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 115
             +RNSRRLMIGSTAPICTYNECR CKYKCRAEQVPVEGNDPINSAYHYRCVCHR
Sbjct: 61  --MRNSRRLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 110

BLAST of Tan0015018 vs. NCBI nr
Match: KAG6593029.1 (EPIDERMAL PATTERNING FACTOR-like protein 9, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 158.3 bits (399), Expect = 3.9e-35
Identity = 85/115 (73.91%), Postives = 94/115 (81.74%), Query Frame = 0

Query: 1   MAKAAKPVSVLLLLLLTLIMISFFSKVAVQG-FSTRDELLAKLPPPFSSIQTTINFQVKN 60
           MAKAAKP+ +LLLLLL LI+ S  S +A++G FST DEL AK  P F S+QTTI  +   
Sbjct: 1   MAKAAKPL-LLLLLLLALILCSLCSTMALKGRFSTEDELFAKPLPQFRSVQTTIAPE--- 60

Query: 61  KMLRNSRRLMIGSTAPICTYNECRSCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 115
             +RNSRRLMIGSTAPICTYNECR CKYKCRAEQVPVEGNDPINSAYHYRCVCHR
Sbjct: 61  --MRNSRRLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 109

BLAST of Tan0015018 vs. NCBI nr
Match: XP_023514879.1 (EPIDERMAL PATTERNING FACTOR-like protein 9 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 157.9 bits (398), Expect = 5.1e-35
Identity = 85/115 (73.91%), Postives = 93/115 (80.87%), Query Frame = 0

Query: 1   MAKAAKPVSVLLLLLLTLIMISFFSKVAVQG-FSTRDELLAKLPPPFSSIQTTINFQVKN 60
           MAKAAKP  +LLLLLL LI+ S  S +A++G FST DEL AK  P F S+QTTI  +   
Sbjct: 1   MAKAAKP--LLLLLLLALILCSLCSTMALKGRFSTEDELFAKPLPQFRSVQTTIAPE--- 60

Query: 61  KMLRNSRRLMIGSTAPICTYNECRSCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 115
             +RNSRRLMIGSTAPICTYNECR CKYKCRAEQVPVEGNDPINSAYHYRCVCHR
Sbjct: 61  --MRNSRRLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 108

BLAST of Tan0015018 vs. ExPASy TrEMBL
Match: A0A6J1DR94 (uncharacterized protein LOC111023601 OS=Momordica charantia OX=3673 GN=LOC111023601 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 3.8e-36
Identity = 92/119 (77.31%), Postives = 98/119 (82.35%), Query Frame = 0

Query: 1   MAKAAKPVSVLLLLLLTLIMISFFSKVAVQGFSTRDE--LLAK-LPPPFSSIQTTINFQV 60
           MAKAAKP SV LLLLLTLI++     VAVQGF+T ++  LLAK LPP FSS+ T  N Q 
Sbjct: 1   MAKAAKPASV-LLLLLTLIIV-----VAVQGFTTGEDELLLAKALPPQFSSVSTMAN-QG 60

Query: 61  KNKMLRNS--RRLMIGSTAPICTYNECRSCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 115
           KNKMLRNS  RRLMIGSTAP CTYNECR CKYKCRAEQVPVEGNDPINSAYHYRCVCHR
Sbjct: 61  KNKMLRNSRTRRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 112

BLAST of Tan0015018 vs. ExPASy TrEMBL
Match: A0A6J1H996 (EPIDERMAL PATTERNING FACTOR-like protein 9 OS=Cucurbita moschata OX=3662 GN=LOC111460784 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 3.8e-36
Identity = 85/115 (73.91%), Postives = 93/115 (80.87%), Query Frame = 0

Query: 1   MAKAAKPVSVLLLLLLTLIMISFFSKVAVQG-FSTRDELLAKLPPPFSSIQTTINFQVKN 60
           MAKAAKP+  LLLLLL LI+ S  S +A++G FST DEL AK  P F S+QTTI  +   
Sbjct: 1   MAKAAKPLLRLLLLLLALILCSLCSTMALKGRFSTEDELFAKPLPQFRSVQTTIAPE--- 60

Query: 61  KMLRNSRRLMIGSTAPICTYNECRSCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 115
             +RNSRRLMIGSTAPICTYNECR CKYKCRAEQVPVEGNDPINSAYHYRCVCHR
Sbjct: 61  --MRNSRRLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 110

BLAST of Tan0015018 vs. ExPASy TrEMBL
Match: A0A6J1KTW3 (EPIDERMAL PATTERNING FACTOR-like protein 9 OS=Cucurbita maxima OX=3661 GN=LOC111497591 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 9.4e-35
Identity = 83/115 (72.17%), Postives = 93/115 (80.87%), Query Frame = 0

Query: 1   MAKAAKPVSVLLLLLLTLIMISFFSKVAVQG-FSTRDELLAKLPPPFSSIQTTINFQVKN 60
           MAKAAKP  +LLLLLL LI+ S  S +A++G FST D++ AK  P F S+QTTI  +   
Sbjct: 1   MAKAAKP--LLLLLLLALILCSLCSTMALKGRFSTEDDVFAKSLPQFRSVQTTIAPE--- 60

Query: 61  KMLRNSRRLMIGSTAPICTYNECRSCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 115
             +RNSRRLMIGSTAPICTYNECR CKYKCRAEQVPVEGNDPINSAYHYRCVCHR
Sbjct: 61  --MRNSRRLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 108

BLAST of Tan0015018 vs. ExPASy TrEMBL
Match: A0A0A0KA17 (EPIDERMAL PATTERNING FACTOR-like protein 9 OS=Cucumis sativus OX=3659 GN=Csa_7G368090 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.5e-27
Identity = 64/89 (71.91%), Postives = 71/89 (79.78%), Query Frame = 0

Query: 27  VAVQGFSTRDELLAKLPPPFSSIQTTI-NFQVKNKMLRNSRRLMIGSTAPICTYNECRSC 86
           +AVQGFSTRD  +    P FSS+Q TI   + + + LR  RR+MIGSTAP CTYNECR C
Sbjct: 1   MAVQGFSTRDRPV----PQFSSLQPTILPLEGRKERLRKWRRVMIGSTAPTCTYNECRGC 60

Query: 87  KYKCRAEQVPVEGNDPINSAYHYRCVCHR 115
           KYKCRAEQVPVEGNDPINSAYHYRCVCHR
Sbjct: 61  KYKCRAEQVPVEGNDPINSAYHYRCVCHR 85

BLAST of Tan0015018 vs. ExPASy TrEMBL
Match: A0A7N2MLX1 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 2.3e-25
Identity = 66/110 (60.00%), Postives = 81/110 (73.64%), Query Frame = 0

Query: 8   VSVLLLLLLTLIMISFFSKVAVQGFSTRDELLAKLPPPFSS-IQTTINFQ--VKNKMLRN 67
           +S LLLLL+TLIM ++     +QG + + EL   L    SS  Q  ++ Q   +  M++N
Sbjct: 6   LSNLLLLLITLIMAAY----VIQGSTNQQELPHPLSASHSSQPQRELHLQGGSERVMMKN 65

Query: 68  SRRLMIGSTAPICTYNECRSCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 115
           SRRLMIGSTAP CTYNECR CKY+CRAEQVPVEGNDP+NSAYHY+CVCHR
Sbjct: 66  SRRLMIGSTAPTCTYNECRGCKYRCRAEQVPVEGNDPVNSAYHYKCVCHR 111

BLAST of Tan0015018 vs. TAIR 10
Match: AT4G12970.1 (stomagen )

HSP 1 Score: 113.6 bits (283), Expect = 1.0e-25
Identity = 49/67 (73.13%), Postives = 56/67 (83.58%), Query Frame = 0

Query: 48  SIQTTINFQVKNKMLRNSRRLMIGSTAPICTYNECRSCKYKCRAEQVPVEGNDPINSAYH 107
           SI+ T++   +  +L + RR MIGSTAP CTYNECR C+YKCRAEQVPVEGNDPINSAYH
Sbjct: 36  SIENTVSLLPQVHLLNSRRRHMIGSTAPTCTYNECRGCRYKCRAEQVPVEGNDPINSAYH 95

Query: 108 YRCVCHR 115
           YRCVCHR
Sbjct: 96  YRCVCHR 102

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9SV721.5e-2473.13EPIDERMAL PATTERNING FACTOR-like protein 9 OS=Arabidopsis thaliana OX=3702 GN=EP... [more]
Match NameE-valueIdentityDescription
XP_038899071.17.7e-3978.07EPIDERMAL PATTERNING FACTOR-like protein 9 [Benincasa hispida][more]
XP_022156765.17.9e-3677.31uncharacterized protein LOC111023601 [Momordica charantia][more]
XP_022959844.17.9e-3673.91EPIDERMAL PATTERNING FACTOR-like protein 9 [Cucurbita moschata][more]
KAG6593029.13.9e-3573.91EPIDERMAL PATTERNING FACTOR-like protein 9, partial [Cucurbita argyrosperma subs... [more]
XP_023514879.15.1e-3573.91EPIDERMAL PATTERNING FACTOR-like protein 9 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
A0A6J1DR943.8e-3677.31uncharacterized protein LOC111023601 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1H9963.8e-3673.91EPIDERMAL PATTERNING FACTOR-like protein 9 OS=Cucurbita moschata OX=3662 GN=LOC1... [more]
A0A6J1KTW39.4e-3572.17EPIDERMAL PATTERNING FACTOR-like protein 9 OS=Cucurbita maxima OX=3661 GN=LOC111... [more]
A0A0A0KA171.5e-2771.91EPIDERMAL PATTERNING FACTOR-like protein 9 OS=Cucumis sativus OX=3659 GN=Csa_7G3... [more]
A0A7N2MLX12.3e-2560.00Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G12970.11.0e-2573.13stomagen [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR044858Stomagen, C-terminal domainPFAMPF16851Stomagencoord: 64..113
e-value: 1.4E-32
score: 111.4
IPR038572Stomagen, C-terminal domain superfamilyGENE3D2.20.25.390Stomagencoord: 70..114
e-value: 4.1E-30
score: 105.4
IPR031753StomagenPANTHERPTHR37239EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 9coord: 3..114
NoneNo IPR availablePANTHERPTHR37239:SF1EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 9coord: 3..114

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0015018.1Tan0015018.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:2000123 positive regulation of stomatal complex development