Tan0014850 (gene) Snake gourd v1

Overview


Name	Tan0014850
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	RNA-binding (RRM/RBD/RNP motifs) family protein
Location	LG06: 1613559 .. 1619088 (+)
RNA-Seq Expression	Tan0014850
Synteny	Tan0014850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCAAATACAATTTTCATAATACTCACCATCTTTAAATTAGCAAAAATAGAAAATATTCCTACATACATTATACATTATGCATATTTCCCGCTCGACTCGGAACGGAGGGGAATTTTTACCCACTTAATCGAACCCTTTCATACTCCGCCGTGCTCGGAGTTAACTCCGGCCAACATCATTTTTTCCGTGAATTCTTCCGGCAATTCGCCGATGGCCCACCAGCCTTATGATCCTTACTATCTCTATCATCAACCGGACCCGAACTACAGTGACCGGAGCAACATCAACACGCTCTTCATCTCCGGTCTACCCGACGACGTCAAGGCGCGCGAGATTCACAACCTTTTCCGTCGCCGGCCGGGCTTCGACTCTTGCCAGCTCAAGTACACTGGACGCGGCAACCAGGTTTTCCTTTCGTTTCCTTTTCTCTTCCCTTTCTTTTCATTTTGGCCGAAGAAAGCTATTGTTAGCGAGGAATAGGAAGAGGAAAATATAGAAGTGAAAAAGGAGGGGACAATTTTTAGGTTTGAGTTTAATTTTGTGTTGTTTGAAAATGCGTGAGAAGATGCCGTTGAGGATAGGTTTTAATTTGTGGATTCTAGCAGCTTTCAATCGTCCCGAATTTGTATACTGCAAGAATACAGAATGATTGGGGATTTTAAGCTTCATTCTGAGTTCACTTGTCTGACGAGGAAGGCTAATTTCCCTCAATCGTTTACTACTTTGTTATTATATAGGAAGTCGGTTCTTCTGCCATTCTTGTAAATTTTGATATATTAAACAACAAATTGGTTGCGGTTTCTAAATAGGTCATTATGTTTTCACAGGTTGTAGCGTTTGCCACCTTTTACAATCATCAATCTGCCGTGACAGCGCTTCATGCATTAAATGTAAGATCGTGTATTGCAGATAGTTCCATGTTTGAGTCTGATTTCTTATTCGTTGTAGAGCTTAGTTGATTTTGTTTTTTTTTTTTTTTTTTGCATGTTGCATTCTATTTCTCTAGCAGGTTATGATACTAGAATTTTGGTCAGTATTATCAATTTTTAATGTTGAGACATAATGGTGGTGCTATACCAGGGTGTCAAATTTGATCCACAAAGTGGATCAGTTCTGCATATTGAACTCGCTAGGTCAAACTCTAGGAGAAAGCACAAACCAGGTGAGGGCTTCAAAATATGGATTTCCTGTTAGTGTCTAGTTATTCTGCTAAGGTAATCTTTTATTGTGATCGGATTCAATGTTGCTCTGTACAGGCGGTGGAGCATATGTTGTGATAGACAAAAGGAAAAATATTGACTTCAATGCCCAGGAAACATCAAGTGATGATGGTGAAATGCTTTTATCTCTAATATATAACATTTGTTTCTAATATCATTTTCTTCTCCTTCTCTTACCTAGATTCATTATGCAGATTTGTATTATCGTTTTGCTTCCAATTTGTTTTCTCAATATGTAGCCTACATGCTACATAATCTTAATTTTGGGGCTCACGTGCATATTTGATGTTCGATTATATATTCAGGAGGCAGTGAACCAGATGAACCATCAAAAAAGACCGAACAAAGGTTGAAAAAGCATTAAACAAAAGTTTAAGTACTCTCAAATATTAGAGAATATAGCATCATTGGGATATAAAGCTGAAACGTTATTAGTTCTTGCAAACTTTTGCCTTAAGGTTGATTATTTTTCTCTTGTCTTAACAATGCAGCAACGAGGTTGTGGTGACTTCTGGTAATGCTCTATCTGCTCCATATGTACGTCGATCTAACTTTATTGTTAGGATTTAGGAACAATATATATAAGAATGCAAATATATATAAGAATGCAATCTCATTATTGTATTATGACATAAAAATAAATATTTCTGGTGTAGCTGTTGGTCTTGTCTGGTCAGTGACTCAGTGTGCAGATTATATTTTCCATGTTTTGAATAGACCAGGTTTAAAAAAATTCTATTTTTGAATTATAGTAATTGATTGCCCTCAATTGAATAAGGTGACAAACATTCTGCAGAAAATCGTTTGATACTAATTTGAAAGTTGAGATTTTGTAAACATGTTCTGGTTTCCAATGAGTGATAGCTTGTTCTTATGGTTTTACCATTCGATTCAATATAGTTTGCTTTATTTGATGTTTGATTGCTGCAGGAGCATCATGAAAAGAATGATGGTGGGCCATGCTCCACTTTGTTTATCGCAAATCTTGGTCCAAACTGCAATGAAGATGAACTGAAGGAAGTCTTGTCCAAGTGAGTTATACTCGCTCAGTGGTTCTTTAACAGCCTTTAGTGAGAATTGTGATAAAATTAAGTGGTGTCATATTGTCTCCTTTACTGCATCCATGATTTTGTTAGGCTTCCTATTGTGAATATCTATGCCAGGAAGAGTAGTAATGTTAGCCACCTATACGGCAAATGTTTATACTAGAAAGAGTAAAAGATGAAATTGAGAGAAAGTTAGAAGGGACGTGCTGCCTTTTTATAGCCAGTAGTCGGAGAGAGTGAGGCATTCTGTGAGAATGTAGAGCGTTTTGGGGGGAGAAACAGCCCTCTCGAATTGGCTGGATGCTTGTATGTTGACATTGTTACTTTTTCTATACTATTACATAGATAAAGCTTCCCAGATACCTATCAAATTCTTGTTTCGATGTGGCATTGAGATATCACATTAGTGGATTAAGTTAAAATCGTATTTTAAATTGTATGAACATTTATTTCTCTAAATCATTATTAGTCTTACATTATATAATGTATGCTGCCAGGCGCCAACTGCATAATTAAATTGGTTTCTAAAATCTAAAGACAAGAATATTTCTCTAAGTCATATTATGTCTCAGACTGTAGGTATGTTATTAGTTCATAAGGTTAAGTACCAAATTAATCAAAGATACCATGGTAAATGCTATGCGGATAAGAGAAGCTTTGCTAAGCCATTGCAATACATCAGAAATTAATAAAAATGGAGCCAACAATTATTATTCTTTATGAGAGAAGTTATATGGTGACATTCTTATGATTCCAGATATCCTGGATTTAACGTGCTCAAATTGCGTGCCAAAAGTGGAATGCCGGTTGCATTTGCTGATTTTGAGGTATGCAAAATTGTCAGGGAATTGTTGAAATTATATTATGCTCCAATTGTCCCTTACATGTGGCTGAACAAGTTGTGCATTGCTTTAATTCTTCAATGAACCGAGTTTTTTGTTTTGTTTTGTTTTTTTTTTTCCTCCTAAATTATCTAATCTACTACACTACCATTGGGGACAAATCTTGCTTTAAATATTATTTCTCGTTTTTTCTTTATAAGGCCACATTCAGATCACAATCTTTGATGATGGAGCCCGAGTAGAAATCTCTTTATTCTAAATATTCAAATAAGAAACTTTGAGCATTCTCAGATATCCAATTTAGAATGAACACAGAAGTAGTAGTTGCCTTCTGATATGCTTAAAGAGCGACGAGAGTCCATCTTCAACACGAATTCATTTACTCGATTTTCTTATTCCAGGAAATTGAGCAAGCTAGCAAGGTTATGGAGGAACTTCAGGGCAGCATGCTACCATCATCAGACCGGGGCGGCATGCATATAGAGTATTTCTATATAAATTACATCTGGATTTTTATTAATAGCATAAGCACATTATGACTGATTGATTGATCTCACATGTTTTTTATTAGGTACGCACGGTCTAAAATGAGGAAGTCTTAGTTGAAAAGCACTCATCAGTCTAGTATGATTCAAAAAGTCTGATTGATTTACTTGCTGCGAGGAATGCTTGCTTGTGGTTATTGGCCCACTCATTTGCTGCTGCTCTGAAGTTTTGTGGCATTCATCAGTCTGGTATTGCTTCAAGTGCTTGCAAACTACACATCGCATCGCTCCCTAGATAATGACAACAGGTTATGTAAACTGATAAATTCATTAGCATTTTAACTTAAAAAATATAGAGTTAAGTACTGTTAAGTGTTGGAAGTCGTTTCCATTCTGGATTTTTAGTTTGAAGAAAGCTGTTGCTATGCAGTAAGTAGTTAATCTTGTAGCGCAAGTGTTAGGAGAAGCTTTCTAAGCTGAACAAGGAGCTGACTTTACCCGTCTTAGTTTAAAGAGCAAAGAAGAGAGGGATCAGTTGTCACAGATTAGAGGCAGTTCATTTGGTAACTCAGTACGTAAGATATTGTGGAACTCAATTAAAAGTGGCTCAATTAGAGGACTTACAGTAGGTTGAGTTCGGTCGGTAACCATAAGAACAAGCAAGCTTGTGTTCCACTTTAAACGTCACACTTATATCCAAACCCTGGGATGGATCCCAGGGGCTGGTTTTGCCGTGTAGGAGGAAGGTGTTGCGGGTCATTAGAAGGTAATAGGACAAGATATCTTCTCTTGAACTTATAGTATCCTTTTTTCCGGCTACAACTAACATCTCAATCAAACTGCCAAAGATGACCTAGGAGTGAATAACAGGCATCCATGTCTACCACATCACACTAACCGTGTCTAGTAGTTCTTGCCAACAAAAATTGGGACTTAACTCATCAGTAACTTTGTGTTCACCTCATTTCTTAATCCATCCAATTTTGTAAGGATTTGGATACTTTTCAATTGGAAGTTGTCTTGCCTAACTAGTGATCTTGCTACAACCATTTGTTTTTTTTTTTTATTTTCGTTGTCAACAACATGTCACAAACTATCCTGTTCTAGAAATTTGATTCTTCTAGGATTTCGAAGGATGTTTTGGGGAAAGTAGGACCTCCATCTCCATGTATCCTCATCAGGGATTCCTCCCCAAATTCATATTCATTGTTGTAGTTATTCCTGCATCATCTATTAGGGGCACGTGTTTGCGTAAGGGACATCGATAACAGAAGAATTCAAGAGCTTCCCCTCCAAAGTACACTCAACTTACAGACTAAGCAAAATCATACCTTACTCAACTCTCACCTCCCCACCCTTCTATTATGTTGTCCCCACGTTCCAGTAACAAAACCCACGGCCTCCCTTTACTAACTTTACAATCGGTCGCCACTCTCCTCCCTCGCGCGCCTCTTATACACTTTCAATAGGTGGTGTCTATCAGACACTCACTCAGGAGTGAATAGTGATCGATGTCCTTGTCGATTACCCTCTGTAGTTTAGCACTAGATTGGAGTTGGCTTTAACACAAGAATTGCCTTTGATAAGGAACATTTTGCTATTTTCATCTTAGCCTATTGCCCAAATCACAATTTCTTTTAAATCATCATTAATTCATCATCCATAAATTCCTTGTCTACTAAAGATAACGTCTCTCTTCACACTGGCTTGTCTTTTTCACTCCACCACTTGCTTGAAACTGTGGCAGTTCAAAGTTTTCTCCTAGAGGGTTGTTATGAACTACCCTCTTGTTGTGTCCTTTGCTTGCTACTGATTTCAATTCTATTTTGGACCAAAACCCAAAAAAAACAAGAACACCAAGTAGATATAGAAACCACCGACGCCCCCATAACAGAATTGGACCTTAGTTTTCTAGGTAGGATTCACGGATTTGAAC

mRNA sequence

ATCAAATACAATTTTCATAATACTCACCATCTTTAAATTAGCAAAAATAGAAAATATTCCTACATACATTATACATTATGCATATTTCCCGCTCGACTCGGAACGGAGGGGAATTTTTACCCACTTAATCGAACCCTTTCATACTCCGCCGTGCTCGGAGTTAACTCCGGCCAACATCATTTTTTCCGTGAATTCTTCCGGCAATTCGCCGATGGCCCACCAGCCTTATGATCCTTACTATCTCTATCATCAACCGGACCCGAACTACAGTGACCGGAGCAACATCAACACGCTCTTCATCTCCGGTCTACCCGACGACGTCAAGGCGCGCGAGATTCACAACCTTTTCCGTCGCCGGCCGGGCTTCGACTCTTGCCAGCTCAAGTACACTGGACGCGGCAACCAGGTTGTAGCGTTTGCCACCTTTTACAATCATCAATCTGCCGTGACAGCGCTTCATGCATTAAATGGTGTCAAATTTGATCCACAAAGTGGATCAGTTCTGCATATTGAACTCGCTAGGTCAAACTCTAGGAGAAAGCACAAACCAGGCGGTGGAGCATATGTTGTGATAGACAAAAGGAAAAATATTGACTTCAATGCCCAGGAAACATCAAGTGATGATGGAGGCAGTGAACCAGATGAACCATCAAAAAAGACCGAACAAAGCAACGAGGTTGTGGTGACTTCTGGTAATGCTCTATCTGCTCCATATGAGCATCATGAAAAGAATGATGGTGGGCCATGCTCCACTTTGTTTATCGCAAATCTTGGTCCAAACTGCAATGAAGATGAACTGAAGGAAGTCTTGTCCAAATATCCTGGATTTAACGTGCTCAAATTGCGTGCCAAAAGTGGAATGCCGGTTGCATTTGCTGATTTTGAGGAAATTGAGCAAGCTAGCAAGGTTATGGAGGAACTTCAGGGCAGCATGCTACCATCATCAGACCGGGGCGGCATGCATATAGAGTACGCACGGTCTAAAATGAGGAAGTCTTAGTTGAAAAGCACTCATCAGTCTAGTATGATTCAAAAAGTCTGATTGATTTACTTGCTGCGAGGAATGCTTGCTTGTGGTTATTGGCCCACTCATTTGCTGCTGCTCTGAAGTTTTGTGGCATTCATCAGTCTGGTATTGCTTCAAGTGCTTGCAAACTACACATCGCATCGCTCCCTAGATAATGACAACAGGTTATGTAAACTGATAAATTCATTAGCATTTTAACTTAAAAAATATAGAGTTAAGTACTGTTAAGTGTTGGAAGTCGTTTCCATTCTGGATTTTTAGTTTGAAGAAAGCTGTTGCTATGCAGTAAGTAGTTAATCTTGTAGCGCAAGTGTTAGGAGAAGCTTTCTAAGCTGAACAAGGAGCTGACTTTACCCGTCTTAGTTTAAAGAGCAAAGAAGAGAGGGATCAGTTGTCACAGATTAGAGGCAGTTCATTTGGTAACTCAGTACGTAAGATATTGTGGAACTCAATTAAAAGTGGCTCAATTAGAGGACTTACAGTAGGTTGAGTTCGGTCGGTAACCATAAGAACAAGCAAGCTTGTGTTCCACTTTAAACGTCACACTTATATCCAAACCCTGGGATGGATCCCAGGGGCTGGTTTTGCCGTGTAGGAGGAAGGTGTTGCGGGTCATTAGAAGGTAATAGGACAAGATATCTTCTCTTGAACTTATAGTATCCTTTTTTCCGGCTACAACTAACATCTCAATCAAACTGCCAAAGATGACCTAGGAGTGAATAACAGGCATCCATGTCTACCACATCACACTAACCGTGTCTAGTAGTTCTTGCCAACAAAAATTGGGACTTAACTCATCAGTAACTTTGTGTTCACCTCATTTCTTAATCCATCCAATTTTGTAAGGATTTGGATACTTTTCAATTGGAAGTTGTCTTGCCTAACTAGTGATCTTGCTACAACCATTTGTTTTTTTTTTTTATTTTCGTTGTCAACAACATGTCACAAACTATCCTGTTCTAGAAATTTGATTCTTCTAGGATTTCGAAGGATGTTTTGGGGAAAGTAGGACCTCCATCTCCATGTATCCTCATCAGGGATTCCTCCCCAAATTCATATTCATTGTTGTAGTTATTCCTGCATCATCTATTAGGGGCACGTGTTTGCGTAAGGGACATCGATAACAGAAGAATTCAAGAGCTTCCCCTCCAAAGTACACTCAACTTACAGACTAAGCAAAATCATACCTTACTCAACTCTCACCTCCCCACCCTTCTATTATGTTGTCCCCACGTTCCAGTAACAAAACCCACGGCCTCCCTTTACTAACTTTACAATCGGTCGCCACTCTCCTCCCTCGCGCGCCTCTTATACACTTTCAATAGGTGGTGTCTATCAGACACTCACTCAGGAGTGAATAGTGATCGATGTCCTTGTCGATTACCCTCTGTAGTTTAGCACTAGATTGGAGTTGGCTTTAACACAAGAATTGCCTTTGATAAGGAACATTTTGCTATTTTCATCTTAGCCTATTGCCCAAATCACAATTTCTTTTAAATCATCATTAATTCATCATCCATAAATTCCTTGTCTACTAAAGATAACGTCTCTCTTCACACTGGCTTGTCTTTTTCACTCCACCACTTGCTTGAAACTGTGGCAGTTCAAAGTTTTCTCCTAGAGGGTTGTTATGAACTACCCTCTTGTTGTGTCCTTTGCTTGCTACTGATTTCAATTCTATTTTGGACCAAAACCCAAAAAAAACAAGAACACCAAGTAGATATAGAAACCACCGACGCCCCCATAACAGAATTGGACCTTAGTTTTCTAGGTAGGATTCACGGATTTGAAC

Coding sequence (CDS)

ATGGCCCACCAGCCTTATGATCCTTACTATCTCTATCATCAACCGGACCCGAACTACAGTGACCGGAGCAACATCAACACGCTCTTCATCTCCGGTCTACCCGACGACGTCAAGGCGCGCGAGATTCACAACCTTTTCCGTCGCCGGCCGGGCTTCGACTCTTGCCAGCTCAAGTACACTGGACGCGGCAACCAGGTTGTAGCGTTTGCCACCTTTTACAATCATCAATCTGCCGTGACAGCGCTTCATGCATTAAATGGTGTCAAATTTGATCCACAAAGTGGATCAGTTCTGCATATTGAACTCGCTAGGTCAAACTCTAGGAGAAAGCACAAACCAGGCGGTGGAGCATATGTTGTGATAGACAAAAGGAAAAATATTGACTTCAATGCCCAGGAAACATCAAGTGATGATGGAGGCAGTGAACCAGATGAACCATCAAAAAAGACCGAACAAAGCAACGAGGTTGTGGTGACTTCTGGTAATGCTCTATCTGCTCCATATGAGCATCATGAAAAGAATGATGGTGGGCCATGCTCCACTTTGTTTATCGCAAATCTTGGTCCAAACTGCAATGAAGATGAACTGAAGGAAGTCTTGTCCAAATATCCTGGATTTAACGTGCTCAAATTGCGTGCCAAAAGTGGAATGCCGGTTGCATTTGCTGATTTTGAGGAAATTGAGCAAGCTAGCAAGGTTATGGAGGAACTTCAGGGCAGCATGCTACCATCATCAGACCGGGGCGGCATGCATATAGAGTACGCACGGTCTAAAATGAGGAAGTCTTAG

Protein sequence

MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKNIDFNAQETSSDDGGSEPDEPSKKTEQSNEVVVTSGNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRKS

Homology

[Close]

BLAST of Tan0014850 vs. ExPASy Swiss-Prot
Match: Q9YGP5 (RNA-binding protein with multiple splicing 2 OS=Xenopus laevis OX=8355 GN=rbpms2 PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.0e-13
Identity = 37/91 (40.66%), Postives = 57/91 (62.64%), Query Frame = 0


Query: 18  NYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQS 77
           N +    + TLF+SGLP D+K RE++ LFR   G++   +K T +  Q V F TF N   
Sbjct: 12  NNNIEEEVRTLFVSGLPIDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTFDNRAG 71

Query: 78  AVTALHALNGVKFDPQSGSVLHIELARSNSR 109
           A  A +ALNG++FDP++   L +E A++N++
Sbjct: 72  AEAAKNALNGIRFDPENPQTLRLEFAKANTK 100

[Close]

BLAST of Tan0014850 vs. ExPASy Swiss-Prot
Match: Q6DH13 (RNA-binding protein, mRNA-processing factor 2a OS=Danio rerio OX=7955 GN=rbpms2a PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.9e-13
Identity = 37/95 (38.95%), Postives = 59/95 (62.11%), Query Frame = 0


Query: 14  QPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFY 73
           + + + S    + TLF+SGLP D+K RE++ LFR   G++   +K T +  Q V F TF 
Sbjct: 8   ETNTSVSLEEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTFD 67

Query: 74  NHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR 109
           +   A  A +ALNG++FDP+S   L +E A++N++
Sbjct: 68  SRSGAEAAKNALNGIRFDPESPQTLRLEFAKANTK 100

[Close]

BLAST of Tan0014850 vs. ExPASy Swiss-Prot
Match: Q9W6I1 (RNA-binding protein with multiple splicing 2 OS=Gallus gallus OX=9031 GN=RBPMS2 PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.3e-12
Identity = 35/84 (41.67%), Postives = 55/84 (65.48%), Query Frame = 0


Query: 25  INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHA 84
           + TLF+SGLP D+K RE++ LFR   G++   +K T +  Q V F TF +   A  A +A
Sbjct: 21  VRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTFDSRAGAEAAKNA 80

Query: 85  LNGVKFDPQSGSVLHIELARSNSR 109
           LNG++FDP++   L +E A++N++
Sbjct: 81  LNGIRFDPENPQTLRLEFAKANTK 102

[Close]

BLAST of Tan0014850 vs. ExPASy Swiss-Prot
Match: Q6ZRY4 (RNA-binding protein with multiple splicing 2 OS=Homo sapiens OX=9606 GN=RBPMS2 PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.9e-12
Identity = 35/84 (41.67%), Postives = 54/84 (64.29%), Query Frame = 0


Query: 25  INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHA 84
           + TLF+SGLP D+K RE++ LFR   G++   +K T R  Q V F  F +   A  A +A
Sbjct: 30  VRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTAR--QPVGFVIFDSRAGAEAAKNA 89

Query: 85  LNGVKFDPQSGSVLHIELARSNSR 109
           LNG++FDP++   L +E A++N++
Sbjct: 90  LNGIRFDPENPQTLRLEFAKANTK 111

[Close]

BLAST of Tan0014850 vs. ExPASy Swiss-Prot
Match: Q8VC52 (RNA-binding protein with multiple splicing 2 OS=Mus musculus OX=10090 GN=Rbpms2 PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.9e-12
Identity = 35/84 (41.67%), Postives = 54/84 (64.29%), Query Frame = 0


Query: 25  INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHA 84
           + TLF+SGLP D+K RE++ LFR   G++   +K T R  Q V F  F +   A  A +A
Sbjct: 24  VRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSR--QPVGFVIFDSRAGAEAAKNA 83

Query: 85  LNGVKFDPQSGSVLHIELARSNSR 109
           LNG++FDP++   L +E A++N++
Sbjct: 84  LNGIRFDPENPQTLRLEFAKANTK 105

[Close]

BLAST of Tan0014850 vs. NCBI nr
Match: XP_023513427.1 (U2 small nuclear ribonucleoprotein B'' 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 513.1 bits (1320), Expect = 1.4e-141
Identity = 252/262 (96.18%), Postives = 254/262 (96.95%), Query Frame = 0


Query: 1   MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60
           MAHQPYDPYYLYHQPD NYSDR+NINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT
Sbjct: 1   MAHQPYDPYYLYHQPDSNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60

Query: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120
           GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV
Sbjct: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120

Query: 121 IDKRKNIDFNAQETSSDDGGSEPDEPSKKTEQSNEVVVTSGNALSAPYEHHEKNDGGPCS 180
           IDKRK  D NAQETSS+DGGSEPDEPSKKTEQSNE VV  GN LSAPYEHHEKNDGGPCS
Sbjct: 121 IDKRKKSDSNAQETSSEDGGSEPDEPSKKTEQSNEAVVAPGNPLSAPYEHHEKNDGGPCS 180

Query: 181 TLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGS 240
           TLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGS
Sbjct: 181 TLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGS 240

Query: 241 MLPSSDRGGMHIEYARSKMRKS 263
           MLPSSDRGGMHIEYARSKMRKS
Sbjct: 241 MLPSSDRGGMHIEYARSKMRKS 262

[Close]

BLAST of Tan0014850 vs. NCBI nr
Match: XP_022964622.1 (protein WHI4 [Cucurbita moschata] >KAG6593512.1 RNA-binding protein, mRNA-processing factor 2a, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 511.9 bits (1317), Expect = 3.2e-141
Identity = 251/262 (95.80%), Postives = 254/262 (96.95%), Query Frame = 0


Query: 1   MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60
           MAHQPYDPYYLYHQPD NYSDR+NINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT
Sbjct: 1   MAHQPYDPYYLYHQPDSNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60

Query: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120
           GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV
Sbjct: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120

Query: 121 IDKRKNIDFNAQETSSDDGGSEPDEPSKKTEQSNEVVVTSGNALSAPYEHHEKNDGGPCS 180
           IDKRK  D NAQETSS+DGGSEPDEPSKKTEQSNE VV  GN LSAPYEHHEKNDGGPCS
Sbjct: 121 IDKRKKSDSNAQETSSEDGGSEPDEPSKKTEQSNEAVVAPGNPLSAPYEHHEKNDGGPCS 180

Query: 181 TLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGS 240
           TLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKV+EELQGS
Sbjct: 181 TLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVLEELQGS 240

Query: 241 MLPSSDRGGMHIEYARSKMRKS 263
           MLPSSDRGGMHIEYARSKMRKS
Sbjct: 241 MLPSSDRGGMHIEYARSKMRKS 262

[Close]

BLAST of Tan0014850 vs. NCBI nr
Match: XP_023000385.1 (U2 small nuclear ribonucleoprotein B'' 2 [Cucurbita maxima])

HSP 1 Score: 510.0 bits (1312), Expect = 1.2e-140
Identity = 251/262 (95.80%), Postives = 253/262 (96.56%), Query Frame = 0


Query: 1   MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60
           MAHQ YDPYYLYHQPD NYSDR+NINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT
Sbjct: 1   MAHQTYDPYYLYHQPDSNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60

Query: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120
           GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV
Sbjct: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120

Query: 121 IDKRKNIDFNAQETSSDDGGSEPDEPSKKTEQSNEVVVTSGNALSAPYEHHEKNDGGPCS 180
           IDKRK  D NAQETSS+DGGSEPDEPSKKTEQSNE VV  GN LSAPYEHHEKNDGGPCS
Sbjct: 121 IDKRKKSDSNAQETSSEDGGSEPDEPSKKTEQSNEAVVAPGNPLSAPYEHHEKNDGGPCS 180

Query: 181 TLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGS 240
           TLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGS
Sbjct: 181 TLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGS 240

Query: 241 MLPSSDRGGMHIEYARSKMRKS 263
           MLPSSDRGGMHIEYARSKMRKS
Sbjct: 241 MLPSSDRGGMHIEYARSKMRKS 262

[Close]

BLAST of Tan0014850 vs. NCBI nr
Match: KAG7025857.1 (RNA-binding protein with multiple splicing 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 509.6 bits (1311), Expect = 1.6e-140
Identity = 250/262 (95.42%), Postives = 253/262 (96.56%), Query Frame = 0


Query: 1   MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60
           MAHQPYDPYYLYHQPD NYSDR+NINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT
Sbjct: 1   MAHQPYDPYYLYHQPDSNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60

Query: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120
           GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV
Sbjct: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120

Query: 121 IDKRKNIDFNAQETSSDDGGSEPDEPSKKTEQSNEVVVTSGNALSAPYEHHEKNDGGPCS 180
           IDKRK  D NAQETSS+DGGSEPDEPSKKTEQSNE VV  GN  SAPYEHHEKNDGGPCS
Sbjct: 121 IDKRKKSDSNAQETSSEDGGSEPDEPSKKTEQSNEAVVAPGNPQSAPYEHHEKNDGGPCS 180

Query: 181 TLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGS 240
           TLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKV+EELQGS
Sbjct: 181 TLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVLEELQGS 240

Query: 241 MLPSSDRGGMHIEYARSKMRKS 263
           MLPSSDRGGMHIEYARSKMRKS
Sbjct: 241 MLPSSDRGGMHIEYARSKMRKS 262

[Close]

BLAST of Tan0014850 vs. NCBI nr
Match: XP_038898771.1 (protein WHI4 isoform X1 [Benincasa hispida])

HSP 1 Score: 504.6 bits (1298), Expect = 5.1e-139
Identity = 247/262 (94.27%), Postives = 252/262 (96.18%), Query Frame = 0


Query: 1   MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60
           MAHQPYDPYYLY+QPDP YSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT
Sbjct: 1   MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60

Query: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120
           GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV
Sbjct: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120

Query: 121 IDKRKNIDFNAQETSSDDGGSEPDEPSKKTEQSNEVVVTSGNALSAPYEHHEKNDGGPCS 180
           IDKRK  D N+QETSSDDGGSEPDEPSKK EQS E +VT  NALSAPYEHHEKNDGGPCS
Sbjct: 121 IDKRKKTDANSQETSSDDGGSEPDEPSKKAEQSGEALVTPANALSAPYEHHEKNDGGPCS 180

Query: 181 TLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGS 240
           TLFIANLGPNCNEDELKEVL KYPGFNVLKLRAKSGMPVAFADFE+IEQASKVMEELQGS
Sbjct: 181 TLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGS 240

Query: 241 MLPSSDRGGMHIEYARSKMRKS 263
           +LPSSDRGGMHIEYARSKMRKS
Sbjct: 241 VLPSSDRGGMHIEYARSKMRKS 262

[Close]

BLAST of Tan0014850 vs. ExPASy TrEMBL
Match: A0A6J1HI97 (protein WHI4 OS=Cucurbita moschata OX=3662 GN=LOC111464580 PE=4 SV=1)

HSP 1 Score: 511.9 bits (1317), Expect = 1.6e-141
Identity = 251/262 (95.80%), Postives = 254/262 (96.95%), Query Frame = 0


Query: 1   MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60
           MAHQPYDPYYLYHQPD NYSDR+NINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT
Sbjct: 1   MAHQPYDPYYLYHQPDSNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60

Query: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120
           GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV
Sbjct: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120

Query: 121 IDKRKNIDFNAQETSSDDGGSEPDEPSKKTEQSNEVVVTSGNALSAPYEHHEKNDGGPCS 180
           IDKRK  D NAQETSS+DGGSEPDEPSKKTEQSNE VV  GN LSAPYEHHEKNDGGPCS
Sbjct: 121 IDKRKKSDSNAQETSSEDGGSEPDEPSKKTEQSNEAVVAPGNPLSAPYEHHEKNDGGPCS 180

Query: 181 TLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGS 240
           TLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKV+EELQGS
Sbjct: 181 TLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVLEELQGS 240

Query: 241 MLPSSDRGGMHIEYARSKMRKS 263
           MLPSSDRGGMHIEYARSKMRKS
Sbjct: 241 MLPSSDRGGMHIEYARSKMRKS 262

[Close]

BLAST of Tan0014850 vs. ExPASy TrEMBL
Match: A0A6J1KI66 (U2 small nuclear ribonucleoprotein B'' 2 OS=Cucurbita maxima OX=3661 GN=LOC111494642 PE=4 SV=1)

HSP 1 Score: 510.0 bits (1312), Expect = 5.9e-141
Identity = 251/262 (95.80%), Postives = 253/262 (96.56%), Query Frame = 0


Query: 1   MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60
           MAHQ YDPYYLYHQPD NYSDR+NINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT
Sbjct: 1   MAHQTYDPYYLYHQPDSNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60

Query: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120
           GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV
Sbjct: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120

Query: 121 IDKRKNIDFNAQETSSDDGGSEPDEPSKKTEQSNEVVVTSGNALSAPYEHHEKNDGGPCS 180
           IDKRK  D NAQETSS+DGGSEPDEPSKKTEQSNE VV  GN LSAPYEHHEKNDGGPCS
Sbjct: 121 IDKRKKSDSNAQETSSEDGGSEPDEPSKKTEQSNEAVVAPGNPLSAPYEHHEKNDGGPCS 180

Query: 181 TLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGS 240
           TLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGS
Sbjct: 181 TLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGS 240

Query: 241 MLPSSDRGGMHIEYARSKMRKS 263
           MLPSSDRGGMHIEYARSKMRKS
Sbjct: 241 MLPSSDRGGMHIEYARSKMRKS 262

[Close]

BLAST of Tan0014850 vs. ExPASy TrEMBL
Match: A0A6J1D3Z3 (uncharacterized protein LOC111017052 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111017052 PE=4 SV=1)

HSP 1 Score: 504.2 bits (1297), Expect = 3.3e-139
Identity = 247/262 (94.27%), Postives = 251/262 (95.80%), Query Frame = 0


Query: 1   MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60
           MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT
Sbjct: 52  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 111

Query: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120
           GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV
Sbjct: 112 GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 171

Query: 121 IDKRKNIDFNAQETSSDDGGSEPDEPSKKTEQSNEVVVTSGNALSAPYEHHEKNDGGPCS 180
           IDKRK  D NAQETSSDDGGSEPDEPSKKTE+S+E V+T  NALS PYEHHEK DGG CS
Sbjct: 172 IDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSVPYEHHEKTDGGHCS 231

Query: 181 TLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGS 240
           TLFIANLGPNCNEDEL EVLSKYPGFNVLKLRAKSGMPVAFADFEE+EQA KVMEELQGS
Sbjct: 232 TLFIANLGPNCNEDELGEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGS 291

Query: 241 MLPSSDRGGMHIEYARSKMRKS 263
           MLPSSDRGGMHIEYARSKMRKS
Sbjct: 292 MLPSSDRGGMHIEYARSKMRKS 313

[Close]

BLAST of Tan0014850 vs. ExPASy TrEMBL
Match: A0A5A7V0X3 (Protein WHI4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00800 PE=4 SV=1)

HSP 1 Score: 502.3 bits (1292), Expect = 1.2e-138
Identity = 245/262 (93.51%), Postives = 252/262 (96.18%), Query Frame = 0


Query: 1   MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60
           MAH PYDPYYLY+QPDP YSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT
Sbjct: 1   MAHHPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60

Query: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120
           GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV
Sbjct: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120

Query: 121 IDKRKNIDFNAQETSSDDGGSEPDEPSKKTEQSNEVVVTSGNALSAPYEHHEKNDGGPCS 180
           IDKRK  D N+QETSSDDGGSEPDEPSKK +QSNE VVT  +A+SAPYEHHEKNDGGPCS
Sbjct: 121 IDKRKKTDANSQETSSDDGGSEPDEPSKKAQQSNEAVVTPASAISAPYEHHEKNDGGPCS 180

Query: 181 TLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGS 240
           TLFIANLGPNCNEDELKEVL KYPGFNVLKLRAKSGMPVAFADFE+IEQASKVMEELQGS
Sbjct: 181 TLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGS 240

Query: 241 MLPSSDRGGMHIEYARSKMRKS 263
           +LPSSDRGGMHIEYARSKMRKS
Sbjct: 241 VLPSSDRGGMHIEYARSKMRKS 262

[Close]

BLAST of Tan0014850 vs. ExPASy TrEMBL
Match: A0A0A0K772 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G451410 PE=4 SV=1)

HSP 1 Score: 501.9 bits (1291), Expect = 1.6e-138
Identity = 245/262 (93.51%), Postives = 252/262 (96.18%), Query Frame = 0


Query: 1   MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60
           MAH PYDPYYLY+QPDP YS+RSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT
Sbjct: 1   MAHLPYDPYYLYNQPDPTYSERSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60

Query: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120
           GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV
Sbjct: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120

Query: 121 IDKRKNIDFNAQETSSDDGGSEPDEPSKKTEQSNEVVVTSGNALSAPYEHHEKNDGGPCS 180
           IDKRK  D N+QETSSDDGGSEPDEPSKK +QSNE VVT  NA+SAPYEHHEKNDGGPCS
Sbjct: 121 IDKRKKTDANSQETSSDDGGSEPDEPSKKAQQSNEAVVTPANAISAPYEHHEKNDGGPCS 180

Query: 181 TLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGS 240
           TLFIANLGPNCNEDELKEVL KYPGFNVLKLRAKSGMPVAFADFE+IEQASKVMEELQGS
Sbjct: 181 TLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGS 240

Query: 241 MLPSSDRGGMHIEYARSKMRKS 263
           +LPSSDRGGMHIEYARSKMRKS
Sbjct: 241 VLPSSDRGGMHIEYARSKMRKS 262

[Close]

BLAST of Tan0014850 vs. TAIR 10
Match: AT3G13700.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 320.9 bits (821), Expect = 9.8e-88
Identity = 175/283 (61.84%), Postives = 208/283 (73.50%), Query Frame = 0


Query: 3   HQPYDPYYLY-------HQPD--PNYSDRSN-INTLFISGLPDDVKAREIHNLFRRRPGF 62
           HQPYDP+Y+Y       H P   P  +D    INTLF+SGLP+DVKAREIHNLFRRR GF
Sbjct: 4   HQPYDPFYVYQLHSHPHHLPPQLPLLADEPGAINTLFVSGLPNDVKAREIHNLFRRRHGF 63

Query: 63  DSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHK 122
           +SCQLKYTGRG+QVVAFATF +H+ A+ A++ LNGVKFDPQ+GS LHIELARSNSRRK +
Sbjct: 64  ESCQLKYTGRGDQVVAFATFTSHRFALAAMNELNGVKFDPQTGSNLHIELARSNSRRKER 123

Query: 123 PGGGAYVVIDKRKNIDFNAQETSSDDGGSEPDEPSK--KTEQSNEVVVTSGNALSAPYE- 182
           PG G YVVID R      +Q+  SD+G S+PDE  +   ++   E   T   A S P   
Sbjct: 124 PGSGPYVVIDNRNKEISKSQDDQSDEGDSDPDEVQEPGNSDSPKENDTTKSEADSEPDSK 183

Query: 183 ------HHEK-NDGG----PCSTLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMP 242
                 H EK ++GG     CSTLFIANLGPNC EDELK++LS+YPGF++LK+RA+ GMP
Sbjct: 184 APSANGHLEKASEGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMP 243

Query: 243 VAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRK 262
           VAFADFEEIEQA+  M  LQG++L SSDRGGMHIEYARSKMRK
Sbjct: 244 VAFADFEEIEQATDAMNHLQGNLLSSSDRGGMHIEYARSKMRK 286

[Close]

BLAST of Tan0014850 vs. TAIR 10
Match: AT3G13700.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 295.0 bits (754), Expect = 5.8e-80
Identity = 167/293 (57.00%), Postives = 200/293 (68.26%), Query Frame = 0


Query: 3   HQPYDPYYLY-------HQPD--PNYSDRSN-INTLFISGLPDDVKAREIHNLFRRRPGF 62
           HQPYDP+Y+Y       H P   P  +D    INTLF+SGLP+DVKAREIHNLFRRR GF
Sbjct: 4   HQPYDPFYVYQLHSHPHHLPPQLPLLADEPGAINTLFVSGLPNDVKAREIHNLFRRRHGF 63

Query: 63  DSCQLKYTGRGNQ------------------VVAFATFYNHQSAVTALHALNGVKFDPQS 122
           +SCQLKYTGRG+Q                  VVAFATF +H+ A+ A++ LNGVKFDPQ+
Sbjct: 64  ESCQLKYTGRGDQVCKNLQFLFFFIPIFRKAVVAFATFTSHRFALAAMNELNGVKFDPQT 123

Query: 123 GSVLHIELARSNSRRKHKPGGGAYVVIDKRKNIDFNAQETSSDDGGSEPDEPSK--KTEQ 182
           GS LHIELARSNSRRK +PG G YVVID R      +Q+  SD+G S+PDE  +   ++ 
Sbjct: 124 GSNLHIELARSNSRRKERPGSGPYVVIDNRNKEISKSQDDQSDEGDSDPDEVQEPGNSDS 183

Query: 183 SNEVVVTSGNALSAPYE-------HHEK-NDGG----PCSTLFIANLGPNCNEDELKEVL 242
             E   T   A S P         H EK ++GG     CSTLFIANLGPNC EDELK++L
Sbjct: 184 PKENDTTKSEADSEPDSKAPSANGHLEKASEGGSGARACSTLFIANLGPNCTEDELKQLL 243

Query: 243 SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIE 254
           S+YPGF++LK+RA+ GMPVAFADFEEIEQA+  M  LQG++L SSDRGGMHIE
Sbjct: 244 SRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLLSSSDRGGMHIE 296

[Close]

BLAST of Tan0014850 vs. TAIR 10
Match: AT2G42240.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 161.0 bits (406), Expect = 1.3e-39
Identity = 99/266 (37.22%), Postives = 146/266 (54.89%), Query Frame = 0


Query: 2   AHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTG 61
           AH  Y P ++      +   R  + TLF++GLP+DVK REI+NLFR  PG+++  L+ + 
Sbjct: 32  AHSVYLPTHV------SIGARDEVRTLFVAGLPEDVKPREIYNLFREFPGYETSHLR-SS 91

Query: 62  RGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVI 121
            G +  AFA F + QSAV  +HALNG+ FD +  S LHI+LA+SN + K       +  +
Sbjct: 92  DGAKPFAFAVFSDLQSAVAVMHALNGMVFDLEKHSTLHIDLAKSNPKSKRSRTDDGWESL 151

Query: 122 DKRKNIDFNAQETSSDDGGSEPDEPSKKTEQSNEVVVTSGN-------ALSAPYEHHEKN 181
            K K     +  T+++ G      P   +   N +  +          A  AP       
Sbjct: 152 KKLK-----SWNTTTESGFGSFQTPGMSSSAYNTIGYSPAQSQGIANVAGRAPTSRKPSK 211

Query: 182 DGGPCSTLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVM 241
              PC TLFIAN+GPNC E EL +V S+  GF  LK++   G PVAF DF+++  +S+ +
Sbjct: 212 AADPCPTLFIANMGPNCTEAELIQVFSRCRGFLKLKIQGTYGTPVAFVDFQDVSCSSEAL 271

Query: 242 EELQGSMLPSSDRGG-MHIEYARSKM 260
             LQG++L SS  G  + ++YARS+M
Sbjct: 272 HTLQGTVLYSSLTGEVLRLQYARSRM 285

[Close]

BLAST of Tan0014850 vs. TAIR 10
Match: AT2G42240.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 156.0 bits (393), Expect = 4.2e-38
Identity = 98/267 (36.70%), Postives = 143/267 (53.56%), Query Frame = 0


Query: 2   AHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTG 61
           AH  Y P ++      +   R  + TLF++GLP+DVK REI+NLFR  PG+++  L+ + 
Sbjct: 32  AHSVYLPTHV------SIGARDEVRTLFVAGLPEDVKPREIYNLFREFPGYETSHLR-SS 91

Query: 62  RGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVI 121
            G +  AFA F + QSAV  +HALNG+ FD +  S LHI+LA+SN + K       +  +
Sbjct: 92  DGAKPFAFAVFSDLQSAVAVMHALNGMVFDLEKHSTLHIDLAKSNPKSKRSRTDDGWESL 151

Query: 122 DKRKNIDFNAQETSSDDGGSEPDEPSKKTEQSNEVVVTSGN-------ALSAPYEHHEKN 181
            K K     +  T+++ G      P   +   N +  +          A  AP       
Sbjct: 152 KKLK-----SWNTTTESGFGSFQTPGMSSSAYNTIGYSPAQSQGIANVAGRAPTSRKPSK 211

Query: 182 DGGPCSTLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVM 241
              PC TLFIAN+GPNC E EL +V S+  GF  LK++   G PVAF DF+++  +S+ +
Sbjct: 212 AADPCPTLFIANMGPNCTEAELIQVFSRCRGFLKLKIQGTYGTPVAFVDFQDVSCSSEAL 271

Query: 242 EELQGSMLPSSDRGGMHIEYARSKMRK 262
             LQG++L SS  G +    +R  MRK
Sbjct: 272 HTLQGTVLYSSLTGEVLRLQSRMGMRK 286

[Close]

BLAST of Tan0014850 vs. TAIR 10
Match: AT2G42240.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 153.7 bits (387), Expect = 2.1e-37
Identity = 94/254 (37.01%), Postives = 137/254 (53.94%), Query Frame = 0


Query: 2   AHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTG 61
           AH  Y P ++      +   R  + TLF++GLP+DVK REI+NLFR  PG+++  L+ + 
Sbjct: 32  AHSVYLPTHV------SIGARDEVRTLFVAGLPEDVKPREIYNLFREFPGYETSHLR-SS 91

Query: 62  RGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVI 121
            G +  AFA F + QSAV  +HALNG+ FD +  S LHI+LA+SN + K       +  +
Sbjct: 92  DGAKPFAFAVFSDLQSAVAVMHALNGMVFDLEKHSTLHIDLAKSNPKSKRSRTDDGWESL 151

Query: 122 DKRKNIDFNAQETSSDDGGSEPDEPSKKTEQSNEVVVTSGN-------ALSAPYEHHEKN 181
            K K     +  T+++ G      P   +   N +  +          A  AP       
Sbjct: 152 KKLK-----SWNTTTESGFGSFQTPGMSSSAYNTIGYSPAQSQGIANVAGRAPTSRKPSK 211

Query: 182 DGGPCSTLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVM 241
              PC TLFIAN+GPNC E EL +V S+  GF  LK++   G PVAF DF+++  +S+ +
Sbjct: 212 AADPCPTLFIANMGPNCTEAELIQVFSRCRGFLKLKIQGTYGTPVAFVDFQDVSCSSEAL 271

Query: 242 EELQGSMLPSSDRG 249
             LQG++L SS  G
Sbjct: 272 HTLQGTVLYSSLTG 273

The following BLAST results are available for this feature:

BLAST of Tan0014850 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9YGP5	2.0e-13	40.66	RNA-binding protein with multiple splicing 2 OS=Xenopus laevis OX=8355 GN=rbpms2...	[more]
Q6DH13	5.9e-13	38.95	RNA-binding protein, mRNA-processing factor 2a OS=Danio rerio OX=7955 GN=rbpms2a...	[more]
Q9W6I1	1.3e-12	41.67	RNA-binding protein with multiple splicing 2 OS=Gallus gallus OX=9031 GN=RBPMS2 ...	[more]
Q6ZRY4	2.9e-12	41.67	RNA-binding protein with multiple splicing 2 OS=Homo sapiens OX=9606 GN=RBPMS2 P...	[more]
Q8VC52	2.9e-12	41.67	RNA-binding protein with multiple splicing 2 OS=Mus musculus OX=10090 GN=Rbpms2 ...	[more]

BLAST of Tan0014850 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023513427.1	1.4e-141	96.18	U2 small nuclear ribonucleoprotein B'' 2 [Cucurbita pepo subsp. pepo]	[more]
XP_022964622.1	3.2e-141	95.80	protein WHI4 [Cucurbita moschata] >KAG6593512.1 RNA-binding protein, mRNA-proces...	[more]
XP_023000385.1	1.2e-140	95.80	U2 small nuclear ribonucleoprotein B'' 2 [Cucurbita maxima]	[more]
KAG7025857.1	1.6e-140	95.42	RNA-binding protein with multiple splicing 2 [Cucurbita argyrosperma subsp. argy...	[more]
XP_038898771.1	5.1e-139	94.27	protein WHI4 isoform X1 [Benincasa hispida]	[more]

BLAST of Tan0014850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HI97	1.6e-141	95.80	protein WHI4 OS=Cucurbita moschata OX=3662 GN=LOC111464580 PE=4 SV=1	[more]
A0A6J1KI66	5.9e-141	95.80	U2 small nuclear ribonucleoprotein B'' 2 OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A6J1D3Z3	3.3e-139	94.27	uncharacterized protein LOC111017052 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A5A7V0X3	1.2e-138	93.51	Protein WHI4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00800 P...	[more]
A0A0A0K772	1.6e-138	93.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G451410 PE=4 SV=1	[more]

BLAST of Tan0014850 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13700.2	9.8e-88	61.84	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G13700.1	5.8e-80	57.00	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G42240.1	1.3e-39	37.22	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G42240.3	4.2e-38	36.70	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G42240.2	2.1e-37	37.01	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 181..253 e-value: 8.7E-9 score: 45.2 coord: 27..101 e-value: 1.0E-5 score: 35.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 182..244 e-value: 5.8E-11 score: 42.1 coord: 28..91 e-value: 3.2E-7 score: 30.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 26..105 score: 11.622288
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 180..257 score: 11.997507
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 172..262 e-value: 1.1E-19 score: 72.3
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 21..108 e-value: 3.6E-21 score: 77.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..157
None	No IPR available	PANTHER	PTHR10501	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	coord: 9..251
None	No IPR available	PANTHER	PTHR10501:SF43	RNA-BINDING PROTEIN-RELATED	coord: 9..251
None	No IPR available	CDD	cd12245	RRM_scw1_like	coord: 178..256 e-value: 3.22931E-44 score: 142.343
None	No IPR available	CDD	cd12420	RRM_RBPMS_like	coord: 26..101 e-value: 7.81583E-31 score: 108.126
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 26..242

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0014850.1	Tan0014850.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding