Tan0014792 (gene) Snake gourd v1

Overview
NameTan0014792
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionGag/pol protein
LocationLG11: 21503765 .. 21505820 (-)
RNA-Seq ExpressionTan0014792
SyntenyTan0014792
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGATTCCATGTCCGCATATGGTGCAATGCGGCGTTAACGCTGTGCTTGCTTGGGAGAAAGCGCGCACAGAGTCGAGTGTTGTTGTAACGCAGCCTCTAGCGTTGCAACGCTCGCGAAGACGACAAAAAAGCGTTGTAACGCCAAAGGCGTTTCACGTAATTCAAAGAACGCGTAAATCGATTTTTATTATATATATTAATTATAAAAATGTTTTATTTTTAGTATATTTAATATATTTAATTTTAATTAATATAACTAGATTATATTAATTAAAATTATTTCTAGGGTGCCAAAATTGGTCTAATTTTTTCTATTTTAATTATGCAATTGTTGTGTAATTATTGCCATGCATAGTGTATGCTTGTATTTTAGAAATCCTACCTTAGGTTAAGCATTTTTATGCATCATTTATAATATAAGGAGTTATATTATATAGTTTACATGATTAATTAATATAAGGTTGTTATATTAATTTTTGGACAGCATTGACATGCATTATTTTTCATGAGATGAATATGCTATGAATGTCTTATTATTCATGTGATGATTGATCAAGCACTATAACATAGTATGCATGTCACCTAAGGTTAATTATTAGTTTTAAAATGTTTAGAACTTGGAAAGAATAGACCTTAGGTTATCTAGTTCTAATTAGATTAGAATTAGGAAGCAAGTAATTTATAAGCTATGATTAAAAGAGGAACTCTGTCTAAGGAAAGTTCTGTCTAGGCTGAGGTATTTAAGCTGACGTAAACAGAACACCCCTACAGGAATCGACACGGGAGTGAAATTTAATCGAGAGAGTCTTATAAATTACTGAGAAGCGTCGTGAGTTTATTAAGGGGTTAATAAACTAGAAATCCTAGGTTTAATATAAGGAGTTATATTAACAAACTTAGGATAAAATCAATATAAGAGTTATATTGATTATCAATATAAGAGTTATATTGATAGAGTTAGGTAAAACCATTAGCCGGGTTTAGCCTAAGAAAGATTCCTATAAACTTAAAGTATTCAGTGTGAGGAAAAAGTGTATGAGATACATATTTTTCCACCTATGCTATCTCCGGGAAGTTCACACCGTGAGACTCATACTTGGCCTCGTGGCGCAAACGGGAGCGCCCCCCTTCGGATGGTGTTTGTATGAGTCAATATCAAGGTGAATGGAGAGGATACTTATAGTGAGTGGGAGCAAGTTTAGTGAAAACAAAACCTACGGTCTCTTTTGTCGGTTTACACCGTTAGACCACTATAGTCAGCCTGCTAGTTTGGCATAGACCAGACAATCCCTTCGGAGGGCTTGATCGTAGGGGATCTAACACAGTAGACACCCGAAAGGGATAAAGATTTCCTTAGACTATTTTCCAATCTAGTCCTCCCTTCGGCGGATTTTATTGGATCGAGACTCTGGGATCTAAAGACAGAAGGTTACAATCACGGGGTACATAAGTTGTGTATGTATCCAGACCGAAAAATGGTAACTAAAACCTATAGGAATAAGAGTTATTCTGGTATTAGGTTTTGGTCAAGAGTGTCTTGATCCAGAGGATGAGTGTTTTTGATTACCCTTCAGTGTCATACATTCTAAACCTTTGGAGTATCATTGCAAATTATAAATGGCCTAGGAATCATTTGATAATTAGCTAAAACATGATTGGATTAGAGTTATAGCAAGAAACTCATACAAGTTTGTTTGTAAATTTTCAGCAAAAATGTCTAGCTCTATAATTTCCTTATTGGGTGCAGAAAAGTTAACCGGAGAGAATATGATGACATAGAAAAACAAACTCAACACTATTTTGGTAGTGAATGATCTAAAGTTTGTGCTAACTGAGAAGTGCCCTCAGGTGCCAGGCTCGAATGCGTCACAAATGTTCGTGATGCTATGATCGATGGATCAAGGCCAATGATAAGGCCAAGGTCCACATGCTGGCAAGTATGTCTGACATATTAGCCAAGAAGCATGAGGGCATGATTACCGCCAAGGAAATCATGAATTCTGTGCAGGGTATGTTTGAACAACAGTCCACACAAGCCGACATAATGCCCTAA

mRNA sequence

ATGGGGATTCCATGTCCGCATATGGTGCAATGCGGCGTTAACGCTGTGCTTGCTTGGGAGAAAGCGCGCACAGAGTCGAGTGTTGTTGTAACGCAGCCTCTAGCGTTGCAACGCTCGCGAAGACGACAAAAAAGCGTTGTAACGCCAAAGGCGTTTCACGCCAATGATAAGGCCAAGGTCCACATGCTGGCAAGTATGTCTGACATATTAGCCAAGAAGCATGAGGGCATGATTACCGCCAAGGAAATCATGAATTCTGTGCAGGGTATGTTTGAACAACAGTCCACACAAGCCGACATAATGCCCTAA

Coding sequence (CDS)

ATGGGGATTCCATGTCCGCATATGGTGCAATGCGGCGTTAACGCTGTGCTTGCTTGGGAGAAAGCGCGCACAGAGTCGAGTGTTGTTGTAACGCAGCCTCTAGCGTTGCAACGCTCGCGAAGACGACAAAAAAGCGTTGTAACGCCAAAGGCGTTTCACGCCAATGATAAGGCCAAGGTCCACATGCTGGCAAGTATGTCTGACATATTAGCCAAGAAGCATGAGGGCATGATTACCGCCAAGGAAATCATGAATTCTGTGCAGGGTATGTTTGAACAACAGTCCACACAAGCCGACATAATGCCCTAA

Protein sequence

MGIPCPHMVQCGVNAVLAWEKARTESSVVVTQPLALQRSRRRQKSVVTPKAFHANDKAKVHMLASMSDILAKKHEGMITAKEIMNSVQGMFEQQSTQADIMP
Homology
[Close]
BLAST of Tan0014792 vs. NCBI nr
Match: XP_022152352.1 (uncharacterized protein LOC111020095 [Momordica charantia])

HSP 1 Score: 65.1 bits (157), Expect = 4.1e-07
Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = 0 

Query: 54  ANDKAKVHMLASMSDILAKKHEGMITAKEIMNSVQGMFEQQSTQA 99
           ANDKAKV++LAS+SD+LAKKHE  ITAKEIM+S+Q MF Q S+QA
Sbjct: 65  ANDKAKVYILASISDVLAKKHEDTITAKEIMDSLQSMFGQPSSQA 109

[Close]
BLAST of Tan0014792 vs. NCBI nr
Match: XP_022154837.1 (uncharacterized protein LOC111022000 [Momordica charantia])

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-06
Identity = 31/45 (68.89%), Postives = 40/45 (88.89%), Query Frame = 0 

Query: 54 ANDKAKVHMLASMSDILAKKHEGMITAKEIMNSVQGMFEQQSTQA 99
          ANDKAKV++L+S+SD+LAKKHE  +TAKEIM+S+Q MF Q S+QA
Sbjct: 35 ANDKAKVYILSSISDVLAKKHEDTVTAKEIMDSLQSMFGQPSSQA 79

[Close]
BLAST of Tan0014792 vs. NCBI nr
Match: XP_022151295.1 (uncharacterized protein LOC111019259 [Momordica charantia])

HSP 1 Score: 62.8 bits (151), Expect = 2.0e-06
Identity = 30/45 (66.67%), Postives = 40/45 (88.89%), Query Frame = 0 

Query: 54  ANDKAKVHMLASMSDILAKKHEGMITAKEIMNSVQGMFEQQSTQA 99
           ANDKA+V++L S+S++LAKKHE M+TAKEIM+S+Q MF Q S+QA
Sbjct: 65  ANDKAEVYILTSISNVLAKKHENMVTAKEIMDSLQSMFGQSSSQA 109

[Close]
BLAST of Tan0014792 vs. NCBI nr
Match: KAA0063740.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK10966.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 2.6e-06
Identity = 30/44 (68.18%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 54  ANDKAKVHMLASMSDILAKKHEGMITAKEIMNSVQGMFEQQSTQ 98
           ANDKA++H+LASMSDIL+KKHE M+TA++IM+S++ MFEQ S Q
Sbjct: 65  ANDKARLHILASMSDILSKKHEIMVTARQIMDSLREMFEQPSIQ 108

[Close]
BLAST of Tan0014792 vs. NCBI nr
Match: KAA0041460.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK24334.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 4.5e-06
Identity = 29/40 (72.50%), Postives = 37/40 (92.50%), Query Frame = 0 

Query: 54  ANDKAKVHMLASMSDILAKKHEGMITAKEIMNSVQGMFEQ 94
           AN+KA+V++LASMSD+LAKKHE + TAKEIMNS++GMF Q
Sbjct: 65  ANEKARVYILASMSDVLAKKHESLATAKEIMNSLKGMFGQ 104

[Close]
BLAST of Tan0014792 vs. ExPASy TrEMBL
Match: A0A6J1DFZ2 (uncharacterized protein LOC111020095 OS=Momordica charantia OX=3673 GN=LOC111020095 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.0e-07
Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = 0 

Query: 54  ANDKAKVHMLASMSDILAKKHEGMITAKEIMNSVQGMFEQQSTQA 99
           ANDKAKV++LAS+SD+LAKKHE  ITAKEIM+S+Q MF Q S+QA
Sbjct: 65  ANDKAKVYILASISDVLAKKHEDTITAKEIMDSLQSMFGQPSSQA 109

[Close]
BLAST of Tan0014792 vs. ExPASy TrEMBL
Match: A0A6J1DMS3 (uncharacterized protein LOC111022000 OS=Momordica charantia OX=3673 GN=LOC111022000 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 5.7e-07
Identity = 31/45 (68.89%), Postives = 40/45 (88.89%), Query Frame = 0 

Query: 54 ANDKAKVHMLASMSDILAKKHEGMITAKEIMNSVQGMFEQQSTQA 99
          ANDKAKV++L+S+SD+LAKKHE  +TAKEIM+S+Q MF Q S+QA
Sbjct: 35 ANDKAKVYILSSISDVLAKKHEDTVTAKEIMDSLQSMFGQPSSQA 79

[Close]
BLAST of Tan0014792 vs. ExPASy TrEMBL
Match: A0A6J1DAT1 (uncharacterized protein LOC111019259 OS=Momordica charantia OX=3673 GN=LOC111019259 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 9.7e-07
Identity = 30/45 (66.67%), Postives = 40/45 (88.89%), Query Frame = 0 

Query: 54  ANDKAKVHMLASMSDILAKKHEGMITAKEIMNSVQGMFEQQSTQA 99
           ANDKA+V++L S+S++LAKKHE M+TAKEIM+S+Q MF Q S+QA
Sbjct: 65  ANDKAEVYILTSISNVLAKKHENMVTAKEIMDSLQSMFGQSSSQA 109

[Close]
BLAST of Tan0014792 vs. ExPASy TrEMBL
Match: A0A5A7V970 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold107G00490 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.3e-06
Identity = 30/44 (68.18%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 54  ANDKAKVHMLASMSDILAKKHEGMITAKEIMNSVQGMFEQQSTQ 98
           ANDKA++H+LASMSDIL+KKHE M+TA++IM+S++ MFEQ S Q
Sbjct: 65  ANDKARLHILASMSDILSKKHEIMVTARQIMDSLREMFEQPSIQ 108

[Close]
BLAST of Tan0014792 vs. ExPASy TrEMBL
Match: A0A5D3DL59 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G001080 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.2e-06
Identity = 29/40 (72.50%), Postives = 37/40 (92.50%), Query Frame = 0 

Query: 54  ANDKAKVHMLASMSDILAKKHEGMITAKEIMNSVQGMFEQ 94
           AN+KA+V++LASMSD+LAKKHE + TAKEIMNS++GMF Q
Sbjct: 65  ANEKARVYILASMSDVLAKKHESLATAKEIMNSLKGMFGQ 104

The following BLAST results are available for this feature:
BLAST of Tan0014792 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0014792 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022152352.14.1e-0773.33uncharacterized protein LOC111020095 [Momordica charantia][more]
XP_022154837.11.2e-0668.89uncharacterized protein LOC111022000 [Momordica charantia][more]
XP_022151295.12.0e-0666.67uncharacterized protein LOC111019259 [Momordica charantia][more]
KAA0063740.12.6e-0668.18gag/pol protein [Cucumis melo var. makuwa] >TYK10966.1 gag/pol protein [Cucumis ... [more]
KAA0041460.14.5e-0672.50gag/pol protein [Cucumis melo var. makuwa] >TYK24334.1 gag/pol protein [Cucumis ... [more]
BLAST of Tan0014792 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DFZ22.0e-0773.33uncharacterized protein LOC111020095 OS=Momordica charantia OX=3673 GN=LOC111020... [more]
A0A6J1DMS35.7e-0768.89uncharacterized protein LOC111022000 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1DAT19.7e-0766.67uncharacterized protein LOC111019259 OS=Momordica charantia OX=3673 GN=LOC111019... [more]
A0A5A7V9701.3e-0668.18Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold107G0049... [more]
A0A5D3DL592.2e-0672.50Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G0010... [more]
BLAST of Tan0014792 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0014792.1Tan0014792.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003677 DNA binding
molecular_function GO:0008270 zinc ion binding