Tan0014277 (gene) Snake gourd v1

Overview


Name	Tan0014277
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	CLAVATA3/ESR (CLE)-related protein 25
Location	LG04: 10806631 .. 10808430 (+)
RNA-Seq Expression	Tan0014277
Synteny	Tan0014277

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTGTCAACAATAAACAAAAAGGCAAAGCAAGGTTTGAGAAAAGTGCAACAGAATCCATCAACCCTATAAAGCAAAAAAAAAGACAACTCCCTAATTAAACATGCAGCCCCTACCAAAAACAAAAACTCATCATCTCCCTCTTTTTCACTTACTCATAATCCCATACTTCTTCTCTTCATTTTGCTTCATGTTTCCTAAGACGATACACCGATCGCCATTATCCTTCCCTTTCGGGTCGTAAAAACGACTAATCTCTCGAAACAATCGTACACAAACCGAAGTATATATATATATATATTTATGAGAAGTGAAGGTAGTTGTTGTTGGTTTTCTTATTTGAAGGTCTTGCTTGGAGCTATGGCTGTGGGGCTGTTTGTATGGCTTTTAATAGTCGGTTCACCGGAGATGGCGAAAACAACAACCTCGCCGGAGGCAGCTGGGTCTGAGGTTGAGGGAAGCCATGGGAAGGAAGCCAAGGTACTGCCTAACAGCAACCATCCAGATCAGTTGGATCTTAACTTTATGAGCAAAGTTAAAGTTCCTAAAGGACCAGATCCCATTCATAACAGGTAATTTAATTTCTTCTAGCTTATGAATATCAACATAGGATTAAATTTTTCATACTCTATCTCAAATTAATTTAACACTTGTCGTGTGTTCAAACACTCTTTTTTTTAATAGTATTAATAATAACTTGCTAGACTTTGGTACTATAAGCTCCAAGCTCATAAGTTAGAATTATTATTTATAAGATTAAATTGATATTTATACTTTAGAAGTGAGTAGGGAGGTCTAAAAGTGTTTTATTTAAAAAAAAAAAAAAATAGTGTTTAGTTAAGATTTTAATGAGTGCCTTTAACCCATTAAAAACACTTTAAAATTAAAATTTCGTCAAAAATGAGTTAAATCTCATTTAAAATTGGGCAGTGCTTGAGTGCTACGTGCTCCCTATTTAATTCACTGCACATTTTTTCCTTTTCTATTTTTCTTTTAAAAAAATACACACACAAAAAAAAATTGTGTGGCCACCAAGGGGCTACACCATATTTAGGTCCCGCTATTCTCCTTTAAAATTTCTAACTCAAGCTTGTACATATTTAAGTAATTTTTCTATTGCACTTATATTATTATTTTTTAAAAAATATTTGGTTGCTCTTCGGTAAGAATCTTTCTTGCTTCTACTATTTAATCATTGACAACAAGTAGTGCAGAGAGAAAATATTTTGCCACATTTCTTTTTCTTTACTGTACTTTCTCTCTCCTTGTTGTCAACAATTAAACAATGTCATAGTGAATTATTCTTGTTATTTGTTTTAGATGTTAAAAGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTGAATAAGTATGTACTTGTTGTTGGGTTTGGCTTGCAGGAGAATTGGGGTTAAAGGAGGGCCTCCAAGCCGAGCGTAGGCTTAGGCTTAGTTTCAGAGGAATTCATGCACTTGTGTTCTTCTCAACCTTAGCTTTTAATATTTATTAACATGTCTTTTATTTGTATTGTAATTTCAATAATCCAAAATTGCTTCTGAAAAATATCTGGATTGTATAGACAACAATTTACAACACTAACTCTTCTCTCTTCATAATATGCCTTTTAAACTCTCTCTCTCTTTCTATGGGCTTGGGCTTGGGCTATTTTGGTTCCAGTTCGACTTGGCCCAATGTAAGCTCGGCCCACAGCCCCCGTGTATGCGTGCTCGGTCCAAATACAAACCAATTGGGCTGTAGGTCTCGAAAGTCCAGTTCGATTTCAAACTACAGAATCATTTAGTCCCC

mRNA sequence

TGTGTCAACAATAAACAAAAAGGCAAAGCAAGGTTTGAGAAAAGTGCAACAGAATCCATCAACCCTATAAAGCAAAAAAAAAGACAACTCCCTAATTAAACATGCAGCCCCTACCAAAAACAAAAACTCATCATCTCCCTCTTTTTCACTTACTCATAATCCCATACTTCTTCTCTTCATTTTGCTTCATGTTTCCTAAGACGATACACCGATCGCCATTATCCTTCCCTTTCGGGTCGTAAAAACGACTAATCTCTCGAAACAATCGTACACAAACCGAAGTATATATATATATATATTTATGAGAAGTGAAGGTAGTTGTTGTTGGTTTTCTTATTTGAAGGTCTTGCTTGGAGCTATGGCTGTGGGGCTGTTTGTATGGCTTTTAATAGTCGGTTCACCGGAGATGGCGAAAACAACAACCTCGCCGGAGGCAGCTGGGTCTGAGGTTGAGGGAAGCCATGGGAAGGAAGCCAAGGTACTGCCTAACAGCAACCATCCAGATCAGTTGGATCTTAACTTTATGAGCAAAGTTAAAGTTCCTAAAGGACCAGATCCCATTCATAACAGGAGAATTGGGGTTAAAGGAGGGCCTCCAAGCCGAGCGTAGGCTTAGGCTTAGTTTCAGAGGAATTCATGCACTTGTGTTCTTCTCAACCTTAGCTTTTAATATTTATTAACATGTCTTTTATTTGTATTGTAATTTCAATAATCCAAAATTGCTTCTGAAAAATATCTGGATTGTATAGACAACAATTTACAACACTAACTCTTCTCTCTTCATAATATGCCTTTTAAACTCTCTCTCTCTTTCTATGGGCTTGGGCTTGGGCTATTTTGGTTCCAGTTCGACTTGGCCCAATGTAAGCTCGGCCCACAGCCCCCGTGTATGCGTGCTCGGTCCAAATACAAACCAATTGGGCTGTAGGTCTCGAAAGTCCAGTTCGATTTCAAACTACAGAATCATTTAGTCCCC

Coding sequence (CDS)

ATGAGAAGTGAAGGTAGTTGTTGTTGGTTTTCTTATTTGAAGGTCTTGCTTGGAGCTATGGCTGTGGGGCTGTTTGTATGGCTTTTAATAGTCGGTTCACCGGAGATGGCGAAAACAACAACCTCGCCGGAGGCAGCTGGGTCTGAGGTTGAGGGAAGCCATGGGAAGGAAGCCAAGGTACTGCCTAACAGCAACCATCCAGATCAGTTGGATCTTAACTTTATGAGCAAAGTTAAAGTTCCTAAAGGACCAGATCCCATTCATAACAGGAGAATTGGGGTTAAAGGAGGGCCTCCAAGCCGAGCGTAG

Protein sequence

MRSEGSCCWFSYLKVLLGAMAVGLFVWLLIVGSPEMAKTTTSPEAAGSEVEGSHGKEAKVLPNSNHPDQLDLNFMSKVKVPKGPDPIHNRRIGVKGGPPSRA

Homology

[Close]

BLAST of Tan0014277 vs. NCBI nr
Match: XP_038891924.1 (uncharacterized protein LOC120081268 [Benincasa hispida])

HSP 1 Score: 136.0 bits (341), Expect = 1.9e-28
Identity = 75/103 (72.82%), Postives = 83/103 (80.58%), Query Frame = 0


Query: 1   MRSEGSCCWFSYLKVLLGAMAVGLFVWLLIVGSPEMAKTTTSPEAAGSEVEGSH-GKEAK 60
           MRS  SC +FSYLKVLLGA+ VGLFVWLLIVGS    +TT+   AA SEVEGSH  K+A+
Sbjct: 1   MRSVDSCSYFSYLKVLLGAVVVGLFVWLLIVGSLPPGRTTSRRPAAESEVEGSHVMKQAE 60

Query: 61  VLPNSNHPDQLDLNFMSKVKVPKGPDPIHNRRIGVKGGPPSRA 103
            L N+NHP +LD NFMSKVKVPKGPDPIHNRRIGVKGGPP  A
Sbjct: 61  ELANNNHP-KLDPNFMSKVKVPKGPDPIHNRRIGVKGGPPRGA 102

[Close]

BLAST of Tan0014277 vs. NCBI nr
Match: XP_022151235.1 (uncharacterized protein LOC111019209 [Momordica charantia])

HSP 1 Score: 127.5 bits (319), Expect = 6.7e-26
Identity = 66/103 (64.08%), Postives = 77/103 (74.76%), Query Frame = 0


Query: 1   MRSEGSCCWFSYLKVLLGAMAVGLFVWLLIVGSPEMAKTTTSPEAAG-SEVEGSHGKEAK 60
           MRSEG+ C FSYLK LL A+ VGLF+W+L+VG PE  +        G     GSH K+ K
Sbjct: 1   MRSEGNLCLFSYLKFLLQALVVGLFLWILMVGLPESRERPAVETTNGLLATVGSHVKQVK 60

Query: 61  VLPNSNHPDQLDLNFMSKVKVPKGPDPIHNRRIGVKGGPPSRA 103
           VLPN+NH D LDLNFMSKV+VPKGPDPIHNRR+G+ GGPPSRA
Sbjct: 61  VLPNNNHQD-LDLNFMSKVRVPKGPDPIHNRRVGINGGPPSRA 102

[Close]

BLAST of Tan0014277 vs. NCBI nr
Match: KAG7030819.1 (hypothetical protein SDJN02_04856, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 124.8 bits (312), Expect = 4.3e-25
Identity = 71/105 (67.62%), Postives = 78/105 (74.29%), Query Frame = 0


Query: 1   MRSEGSCCWFSYLKVLLGAMAVGLFVWLLIVGSPE-----MAKTTTSPEAAGSEVEGSHG 60
           MR EGSCC FSY KVLLGA+AVG+FVWLLIVG P+     MAKTT+ P AA SE EGSH 
Sbjct: 1   MRREGSCCSFSYFKVLLGAVAVGMFVWLLIVGMPDSGERSMAKTTSWP-AARSEFEGSHM 60

Query: 61  KEAKVLPNSNHPDQLDLNFMSKVKVPKGPDPIHNRRIGVKGGPPS 101
           K+AK           +LNFMSKVKVPKGPDPIHNRR GVKG PP+
Sbjct: 61  KQAK-----------ELNFMSKVKVPKGPDPIHNRRTGVKGRPPA 93

[Close]

BLAST of Tan0014277 vs. NCBI nr
Match: XP_011655655.1 (uncharacterized protein LOC105435565 [Cucumis sativus] >KGN51858.1 hypothetical protein Csa_008237 [Cucumis sativus])

HSP 1 Score: 122.5 bits (306), Expect = 2.1e-24
Identity = 71/108 (65.74%), Postives = 81/108 (75.00%), Query Frame = 0


Query: 1   MRSEGSCCWFSYLKVLLGAMAVGLFVWLLIVGS--PEMAKTTTSPEAAGS--EVEGSHG- 60
           M+S  SCC+FSYLKVLLGA+ VGLFVWLL+VGS  P   +T +   AA S  +VEG H  
Sbjct: 1   MKSVDSCCYFSYLKVLLGAVVVGLFVWLLVVGSSPPPPGRTKSWQAAAESVHQVEGRHAM 60

Query: 61  KEAK-VLPNSNHPDQLDLNFMSKVKVPKGPDPIHNRRIGVKGGPPSRA 103
           KEA+  L  +NHP  LD NFMSKV+VPKGPDPIHNRRIGVKGGPP  A
Sbjct: 61  KEAEDQLAINNHPKLLDPNFMSKVRVPKGPDPIHNRRIGVKGGPPRGA 108

[Close]

BLAST of Tan0014277 vs. NCBI nr
Match: XP_041009970.1 (uncharacterized protein LOC121254074 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 72.8 bits (177), Expect = 1.9e-09
Identity = 41/94 (43.62%), Postives = 55/94 (58.51%), Query Frame = 0


Query: 12  YLKVLLGAMAVGLFVWLLIVGSPEMAKTTTSPEAAGSEVEGSHGKEAKVLPNSN---HPD 71
           +LKVL GA+A+   ++L    S +  +T  +     SE  G+    A ++   N   HP 
Sbjct: 19  HLKVLFGALALVGVIFLFTASSQQGGRTEINAPTVTSESGGNSKLHAYIMGRGNFVDHPP 78

Query: 72  QLDLNFMSKVKVPKGPDPIHNRRIGVKGGPPSRA 103
           +LDLN+MSK +VP GPDPIHNRR G  G PP RA
Sbjct: 79  ELDLNYMSKRRVPNGPDPIHNRRTGNSGRPPGRA 112

[Close]

BLAST of Tan0014277 vs. ExPASy TrEMBL
Match: A0A6J1DAM7 (uncharacterized protein LOC111019209 OS=Momordica charantia OX=3673 GN=LOC111019209 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 3.2e-26
Identity = 66/103 (64.08%), Postives = 77/103 (74.76%), Query Frame = 0


Query: 1   MRSEGSCCWFSYLKVLLGAMAVGLFVWLLIVGSPEMAKTTTSPEAAG-SEVEGSHGKEAK 60
           MRSEG+ C FSYLK LL A+ VGLF+W+L+VG PE  +        G     GSH K+ K
Sbjct: 1   MRSEGNLCLFSYLKFLLQALVVGLFLWILMVGLPESRERPAVETTNGLLATVGSHVKQVK 60

Query: 61  VLPNSNHPDQLDLNFMSKVKVPKGPDPIHNRRIGVKGGPPSRA 103
           VLPN+NH D LDLNFMSKV+VPKGPDPIHNRR+G+ GGPPSRA
Sbjct: 61  VLPNNNHQD-LDLNFMSKVRVPKGPDPIHNRRVGINGGPPSRA 102

[Close]

BLAST of Tan0014277 vs. ExPASy TrEMBL
Match: A0A0A0KQF7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G604030 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.0e-24
Identity = 71/108 (65.74%), Postives = 81/108 (75.00%), Query Frame = 0


Query: 1   MRSEGSCCWFSYLKVLLGAMAVGLFVWLLIVGS--PEMAKTTTSPEAAGS--EVEGSHG- 60
           M+S  SCC+FSYLKVLLGA+ VGLFVWLL+VGS  P   +T +   AA S  +VEG H  
Sbjct: 1   MKSVDSCCYFSYLKVLLGAVVVGLFVWLLVVGSSPPPPGRTKSWQAAAESVHQVEGRHAM 60

Query: 61  KEAK-VLPNSNHPDQLDLNFMSKVKVPKGPDPIHNRRIGVKGGPPSRA 103
           KEA+  L  +NHP  LD NFMSKV+VPKGPDPIHNRRIGVKGGPP  A
Sbjct: 61  KEAEDQLAINNHPKLLDPNFMSKVRVPKGPDPIHNRRIGVKGGPPRGA 108

[Close]

BLAST of Tan0014277 vs. ExPASy TrEMBL
Match: A0A2I4DZU0 (uncharacterized protein LOC108985001 OS=Juglans regia OX=51240 GN=LOC108985001 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.1e-09
Identity = 41/94 (43.62%), Postives = 55/94 (58.51%), Query Frame = 0


Query: 12  YLKVLLGAMAVGLFVWLLIVGSPEMAKTTTSPEAAGSEVEGSHGKEAKVLPNSN---HPD 71
           +LKVL GA+A+   ++L    S +  +T  +     S+  G+    A V+   N   HP 
Sbjct: 19  HLKVLFGALALVGVIFLFTASSQQGGRTEINAPTLTSDSGGNSKLHAYVMGRGNFVDHPP 78

Query: 72  QLDLNFMSKVKVPKGPDPIHNRRIGVKGGPPSRA 103
           +LDLN+MSK +VP GPDPIHNRR G  G PP RA
Sbjct: 79  ELDLNYMSKRRVPNGPDPIHNRRTGNSGRPPGRA 112

[Close]

BLAST of Tan0014277 vs. ExPASy TrEMBL
Match: M5XZR3 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G263100 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.0e-08
Identity = 46/98 (46.94%), Postives = 59/98 (60.20%), Query Frame = 0


Query: 12  YLKVLLGAMAVGLFVWLLIVGSPE----MAKTTTSPEAAGSEVEGSHGKEAKVLPNSN-- 71
           +LK+  G +AV  F+ +L+VG+ E    + KT TS  AA    E    K A V+   N  
Sbjct: 10  FLKLFFGTLAVMGFICVLLVGTLETQGGLTKTATSTAAA---PESFSEKPADVVGRENKL 69

Query: 72  -HPDQLDLNFMSKVKVPKGPDPIHNRRIGVKGGPPSRA 103
            HP +LDLN+MSK +VP GPDPIHNRR G  G PP +A
Sbjct: 70  VHP-ELDLNYMSKRRVPNGPDPIHNRRAGSSGRPPGQA 103

[Close]

BLAST of Tan0014277 vs. ExPASy TrEMBL
Match: A0A6P4AZK1 (CLAVATA3/ESR (CLE)-related protein 25 OS=Ziziphus jujuba OX=326968 GN=LOC107428761 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.0e-08
Identity = 40/92 (43.48%), Postives = 57/92 (61.96%), Query Frame = 0


Query: 12  YLKVLLGAMAVGLFVWLLIVGSPEMAKTTTSPEAAGSEVEGS-HGKEAKVLPNSNHPDQL 71
           + K+L  A+AV  F+W+L+VG+ +    +   E+AG+  +    G+E  V P      QL
Sbjct: 17  FSKLLFRALAVVGFIWILLVGTGDTKSASFVAESAGNIKDSDVVGREKLVRP------QL 76

Query: 72  DLNFMSKVKVPKGPDPIHNRRIGVKGGPPSRA 103
           D+N+MSK +VP GPDPIHNRR G  G PP +A
Sbjct: 77  DINYMSKRRVPNGPDPIHNRRAGNSGRPPGQA 102

[Close]

BLAST of Tan0014277 vs. TAIR 10
Match: AT1G69970.2 (CLAVATA3/ESR-RELATED 26 )

HSP 1 Score: 43.1 bits (100), Expect = 1.5e-04
Identity = 21/33 (63.64%), Postives = 25/33 (75.76%), Query Frame = 0


Query: 71  DLNFM-SKVKVPKGPDPIHNRRIGVKGGPPSRA 103
           DL+++ SK KVP+GPDPIHNRR G    PP RA
Sbjct: 70  DLSYVASKRKVPRGPDPIHNRRAGNSRRPPGRA 102

The following BLAST results are available for this feature:

BLAST of Tan0014277 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0014277 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891924.1	1.9e-28	72.82	uncharacterized protein LOC120081268 [Benincasa hispida]	[more]
XP_022151235.1	6.7e-26	64.08	uncharacterized protein LOC111019209 [Momordica charantia]	[more]
KAG7030819.1	4.3e-25	67.62	hypothetical protein SDJN02_04856, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_011655655.1	2.1e-24	65.74	uncharacterized protein LOC105435565 [Cucumis sativus] >KGN51858.1 hypothetical ...	[more]
XP_041009970.1	1.9e-09	43.62	uncharacterized protein LOC121254074 [Juglans microcarpa x Juglans regia]	[more]

BLAST of Tan0014277 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DAM7	3.2e-26	64.08	uncharacterized protein LOC111019209 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A0A0KQF7	1.0e-24	65.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G604030 PE=4 SV=1	[more]
A0A2I4DZU0	2.1e-09	43.62	uncharacterized protein LOC108985001 OS=Juglans regia OX=51240 GN=LOC108985001 P...	[more]
M5XZR3	1.0e-08	46.94	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G263100 PE=4 SV=1	[more]
A0A6P4AZK1	1.0e-08	43.48	CLAVATA3/ESR (CLE)-related protein 25 OS=Ziziphus jujuba OX=326968 GN=LOC1074287...	[more]

BLAST of Tan0014277 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G69970.2	1.5e-04	63.64	CLAVATA3/ESR-RELATED 26	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..102
None	No IPR available	PANTHER	PTHR34277:SF2	CLAVATA3/ESR (CLE)-RELATED PROTEIN 26	coord: 12..102
IPR039316	CLAVATA3/ESR (CLE)-related protein 25/26	PANTHER	PTHR34277	CLAVATA3/ESR (CLE)-RELATED PROTEIN 26	coord: 12..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0014277.1	Tan0014277.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045168	cell-cell signaling involved in cell fate commitment
cellular_component	GO:0016020	membrane