Tan0014085 (gene) Snake gourd v1

Overview


Name	Tan0014085
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG09: 66812602 .. 66812949 (-)
RNA-Seq Expression	Tan0014085
Synteny	Tan0014085

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCAAAATCACTAAACGCATCCGCCACAAAGTTTGCACTTACATTTCTACTCTGCATAGCCATTTTATCATCACCGGCAATGGCTCGCACGGTGGCAGCGGCAGCGGCACCCGATCCGTTAGTAACAGAGGATTTCTCTTTGTTTTCCTGCATATCGTTTGTTCCAGAAGTGACAAAGTGCGTGATAGATGTTTTCAAGCATGTGATTGCTCCTCATCCTCCTTGTTGCAAAGCCATTTCTAAACTCCATGATTGTTCTTCCAAGTTCCTCAGAGGCATTTCTTCTGATGAAATGGTTTTGATCAAGAGTGTTTGTGCTTCATGGGGTGTTTCAATTTCTTAG

mRNA sequence

ATGGCAGCAAAATCACTAAACGCATCCGCCACAAAGTTTGCACTTACATTTCTACTCTGCATAGCCATTTTATCATCACCGGCAATGGCTCGCACGGTGGCAGCGGCAGCGGCACCCGATCCGTTAGTAACAGAGGATTTCTCTTTGTTTTCCTGCATATCGTTTGTTCCAGAAGTGACAAAGTGCGTGATAGATGTTTTCAAGCATGTGATTGCTCCTCATCCTCCTTGTTGCAAAGCCATTTCTAAACTCCATGATTGTTCTTCCAAGTTCCTCAGAGGCATTTCTTCTGATGAAATGGTTTTGATCAAGAGTGTTTGTGCTTCATGGGGTGTTTCAATTTCTTAG

Coding sequence (CDS)

ATGGCAGCAAAATCACTAAACGCATCCGCCACAAAGTTTGCACTTACATTTCTACTCTGCATAGCCATTTTATCATCACCGGCAATGGCTCGCACGGTGGCAGCGGCAGCGGCACCCGATCCGTTAGTAACAGAGGATTTCTCTTTGTTTTCCTGCATATCGTTTGTTCCAGAAGTGACAAAGTGCGTGATAGATGTTTTCAAGCATGTGATTGCTCCTCATCCTCCTTGTTGCAAAGCCATTTCTAAACTCCATGATTGTTCTTCCAAGTTCCTCAGAGGCATTTCTTCTGATGAAATGGTTTTGATCAAGAGTGTTTGTGCTTCATGGGGTGTTTCAATTTCTTAG

Protein sequence

MAAKSLNASATKFALTFLLCIAILSSPAMARTVAAAAAPDPLVTEDFSLFSCISFVPEVTKCVIDVFKHVIAPHPPCCKAISKLHDCSSKFLRGISSDEMVLIKSVCASWGVSIS

Homology

[Close]

BLAST of Tan0014085 vs. NCBI nr
Match: KAA0050081.1 (hypothetical protein E6C27_scaffold675G00650 [Cucumis melo var. makuwa])

HSP 1 Score: 141.7 bits (356), Expect = 3.8e-30
Identity = 75/116 (64.66%), Postives = 80/116 (68.97%), Query Frame = 0


Query: 1   MAAKSLNASATKFALTFLLCIAILSSPAMARTVAAA-AAPDPLVTEDFSLFSCISFVPEV 60
           MAAKSL  S  K  L FL C AI + PA A   A A   PDP +TED S F C SFVPE 
Sbjct: 1   MAAKSLKTSTMKLILIFLCCTAIFTLPAEAMKAAVAPTQPDPFLTEDISFFPCFSFVPEA 60

Query: 61  TKCVIDVFKHVIAPHPPCCKAISKLHDCSSKFLRGISSDEMVLIKSVCASWGVSIS 116
           TKC+IDVFKH IAPHP CCKAISKL  CSS F  GI S +M+LIKSVC SWG SIS
Sbjct: 61  TKCMIDVFKHPIAPHPTCCKAISKLKSCSSSFFNGIPSADMILIKSVCTSWGASIS 116

[Close]

BLAST of Tan0014085 vs. NCBI nr
Match: TYK10345.1 (hypothetical protein E5676_scaffold367G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 135.2 bits (339), Expect = 3.6e-28
Identity = 69/109 (63.30%), Postives = 86/109 (78.90%), Query Frame = 0


Query: 8   ASATKFALTFLLCIAILSSPAMAR-TVAAAAAPDPLVTEDFSLFSCISFVPEVTKCVIDV 67
           ++ TK  L  L+CIAIL+S   AR T+ AAA P    +EDFSLF CISFVP+ TKCVIDV
Sbjct: 4   SAITKLPLVLLVCIAILASSVTARPTIVAAATP---TSEDFSLFPCISFVPKATKCVIDV 63

Query: 68  FKHVIAPHPPCCKAISKLHDCSSKFLRGISSDEMVLIKSVCASWGVSIS 116
            K+ +APHP CC+AIS+LHDCSS+FL+ I S +M+L+KS+CASWGVSIS
Sbjct: 64  LKNAVAPHPSCCEAISQLHDCSSQFLKDIPSSDMILVKSICASWGVSIS 109

[Close]

BLAST of Tan0014085 vs. NCBI nr
Match: KGN65096.1 (hypothetical protein Csa_004577 [Cucumis sativus])

HSP 1 Score: 133.7 bits (335), Expect = 1.0e-27
Identity = 71/116 (61.21%), Postives = 77/116 (66.38%), Query Frame = 0


Query: 1   MAAKSLNASATKFALTFLLCIAILSSPAMARTVA-AAAAPDPLVTEDFSLFSCISFVPEV 60
           MAAKSL     K  L F+ C AI + PA A  VA A   P P  TED S F C SFVPE 
Sbjct: 1   MAAKSLKTPTMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEA 60

Query: 61  TKCVIDVFKHVIAPHPPCCKAISKLHDCSSKFLRGISSDEMVLIKSVCASWGVSIS 116
           TKC+IDVFKH IA HP CCKAISKL  CSS F  GI S +M++IKSVC SWG SIS
Sbjct: 61  TKCMIDVFKHPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVCTSWGASIS 116

[Close]

BLAST of Tan0014085 vs. NCBI nr
Match: KAA0050063.1 (hypothetical protein E6C27_scaffold675G00440 [Cucumis melo var. makuwa])

HSP 1 Score: 131.0 bits (328), Expect = 6.8e-27
Identity = 68/109 (62.39%), Postives = 86/109 (78.90%), Query Frame = 0


Query: 8   ASATKFALTFLLCIAILSSPAMAR-TVAAAAAPDPLVTEDFSLFSCISFVPEVTKCVIDV 67
           ++ TK  L  L+CIAIL+S   AR T+ AAA P   +++DFSLF CISFVP  TK VIDV
Sbjct: 4   SAITKLPLILLVCIAILASSVTARPTIVAAATP---ISKDFSLFPCISFVPMATKRVIDV 63

Query: 68  FKHVIAPHPPCCKAISKLHDCSSKFLRGISSDEMVLIKSVCASWGVSIS 116
            K+ +APHP CC+AIS+LHDCSS+FL+ I SD+M+L+KS+CASWGVSIS
Sbjct: 64  LKNAVAPHPSCCEAISQLHDCSSQFLKDIPSDDMILVKSICASWGVSIS 109

[Close]

BLAST of Tan0014085 vs. NCBI nr
Match: KAA0050079.1 (hypothetical protein E6C27_scaffold675G00630 [Cucumis melo var. makuwa])

HSP 1 Score: 130.2 bits (326), Expect = 1.2e-26
Identity = 67/109 (61.47%), Postives = 85/109 (77.98%), Query Frame = 0


Query: 8   ASATKFALTFLLCIAILSSPAMA-RTVAAAAAPDPLVTEDFSLFSCISFVPEVTKCVIDV 67
           ++ TK  L   +CIAIL+S   A  T+ AAA P    +EDFSLF CISFVP+ TKCVIDV
Sbjct: 4   SAITKLPLVLRVCIAILASSVTACPTIVAAATP---TSEDFSLFPCISFVPKATKCVIDV 63

Query: 68  FKHVIAPHPPCCKAISKLHDCSSKFLRGISSDEMVLIKSVCASWGVSIS 116
            K+V+APHP CC+AI++LHDCSS+FL+ I S +M+L+KS+CASWGVSIS
Sbjct: 64  LKNVVAPHPSCCEAITQLHDCSSQFLKDIPSGDMILVKSICASWGVSIS 109

[Close]

BLAST of Tan0014085 vs. ExPASy TrEMBL
Match: A0A5A7U904 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00650 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.9e-30
Identity = 75/116 (64.66%), Postives = 80/116 (68.97%), Query Frame = 0


Query: 1   MAAKSLNASATKFALTFLLCIAILSSPAMARTVAAA-AAPDPLVTEDFSLFSCISFVPEV 60
           MAAKSL  S  K  L FL C AI + PA A   A A   PDP +TED S F C SFVPE 
Sbjct: 1   MAAKSLKTSTMKLILIFLCCTAIFTLPAEAMKAAVAPTQPDPFLTEDISFFPCFSFVPEA 60

Query: 61  TKCVIDVFKHVIAPHPPCCKAISKLHDCSSKFLRGISSDEMVLIKSVCASWGVSIS 116
           TKC+IDVFKH IAPHP CCKAISKL  CSS F  GI S +M+LIKSVC SWG SIS
Sbjct: 61  TKCMIDVFKHPIAPHPTCCKAISKLKSCSSSFFNGIPSADMILIKSVCTSWGASIS 116

[Close]

BLAST of Tan0014085 vs. ExPASy TrEMBL
Match: A0A5D3CFS6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00210 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.7e-28
Identity = 69/109 (63.30%), Postives = 86/109 (78.90%), Query Frame = 0


Query: 8   ASATKFALTFLLCIAILSSPAMAR-TVAAAAAPDPLVTEDFSLFSCISFVPEVTKCVIDV 67
           ++ TK  L  L+CIAIL+S   AR T+ AAA P    +EDFSLF CISFVP+ TKCVIDV
Sbjct: 4   SAITKLPLVLLVCIAILASSVTARPTIVAAATP---TSEDFSLFPCISFVPKATKCVIDV 63

Query: 68  FKHVIAPHPPCCKAISKLHDCSSKFLRGISSDEMVLIKSVCASWGVSIS 116
            K+ +APHP CC+AIS+LHDCSS+FL+ I S +M+L+KS+CASWGVSIS
Sbjct: 64  LKNAVAPHPSCCEAISQLHDCSSQFLKDIPSSDMILVKSICASWGVSIS 109

[Close]

BLAST of Tan0014085 vs. ExPASy TrEMBL
Match: A0A0A0LYQ3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G212820 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 5.1e-28
Identity = 71/116 (61.21%), Postives = 77/116 (66.38%), Query Frame = 0


Query: 1   MAAKSLNASATKFALTFLLCIAILSSPAMARTVA-AAAAPDPLVTEDFSLFSCISFVPEV 60
           MAAKSL     K  L F+ C AI + PA A  VA A   P P  TED S F C SFVPE 
Sbjct: 1   MAAKSLKTPTMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEA 60

Query: 61  TKCVIDVFKHVIAPHPPCCKAISKLHDCSSKFLRGISSDEMVLIKSVCASWGVSIS 116
           TKC+IDVFKH IA HP CCKAISKL  CSS F  GI S +M++IKSVC SWG SIS
Sbjct: 61  TKCMIDVFKHPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVCTSWGASIS 116

[Close]

BLAST of Tan0014085 vs. ExPASy TrEMBL
Match: A0A5A7U2D8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00440 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 3.3e-27
Identity = 68/109 (62.39%), Postives = 86/109 (78.90%), Query Frame = 0


Query: 8   ASATKFALTFLLCIAILSSPAMAR-TVAAAAAPDPLVTEDFSLFSCISFVPEVTKCVIDV 67
           ++ TK  L  L+CIAIL+S   AR T+ AAA P   +++DFSLF CISFVP  TK VIDV
Sbjct: 4   SAITKLPLILLVCIAILASSVTARPTIVAAATP---ISKDFSLFPCISFVPMATKRVIDV 63

Query: 68  FKHVIAPHPPCCKAISKLHDCSSKFLRGISSDEMVLIKSVCASWGVSIS 116
            K+ +APHP CC+AIS+LHDCSS+FL+ I SD+M+L+KS+CASWGVSIS
Sbjct: 64  LKNAVAPHPSCCEAISQLHDCSSQFLKDIPSDDMILVKSICASWGVSIS 109

[Close]

BLAST of Tan0014085 vs. ExPASy TrEMBL
Match: A0A5A7U9B0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00630 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 5.6e-27
Identity = 67/109 (61.47%), Postives = 85/109 (77.98%), Query Frame = 0


Query: 8   ASATKFALTFLLCIAILSSPAMA-RTVAAAAAPDPLVTEDFSLFSCISFVPEVTKCVIDV 67
           ++ TK  L   +CIAIL+S   A  T+ AAA P    +EDFSLF CISFVP+ TKCVIDV
Sbjct: 4   SAITKLPLVLRVCIAILASSVTACPTIVAAATP---TSEDFSLFPCISFVPKATKCVIDV 63

Query: 68  FKHVIAPHPPCCKAISKLHDCSSKFLRGISSDEMVLIKSVCASWGVSIS 116
            K+V+APHP CC+AI++LHDCSS+FL+ I S +M+L+KS+CASWGVSIS
Sbjct: 64  LKNVVAPHPSCCEAITQLHDCSSQFLKDIPSGDMILVKSICASWGVSIS 109

The following BLAST results are available for this feature:

BLAST of Tan0014085 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0014085 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050081.1	3.8e-30	64.66	hypothetical protein E6C27_scaffold675G00650 [Cucumis melo var. makuwa]	[more]
TYK10345.1	3.6e-28	63.30	hypothetical protein E5676_scaffold367G00210 [Cucumis melo var. makuwa]	[more]
KGN65096.1	1.0e-27	61.21	hypothetical protein Csa_004577 [Cucumis sativus]	[more]
KAA0050063.1	6.8e-27	62.39	hypothetical protein E6C27_scaffold675G00440 [Cucumis melo var. makuwa]	[more]
KAA0050079.1	1.2e-26	61.47	hypothetical protein E6C27_scaffold675G00630 [Cucumis melo var. makuwa]	[more]

BLAST of Tan0014085 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U904	1.9e-30	64.66	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CFS6	1.7e-28	63.30	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LYQ3	5.1e-28	61.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G212820 PE=4 SV=1	[more]
A0A5A7U2D8	3.3e-27	62.39	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U9B0	5.6e-27	61.47	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Tan0014085 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0014085.1	Tan0014085.1	mRNA