Tan0013938 (gene) Snake gourd v1

Overview


Name	Tan0013938
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	E3 ubiquitin-protein ligase RING1-like
Location	LG08: 1057278 .. 1057711 (+)
RNA-Seq Expression	Tan0013938
Synteny	Tan0013938

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCACAAGTAGAGAAGAGAACCCGCTATCTACTCCATCTCCCTAGTTCCTAAACCACTCTTTTTTTTTCTCTCTCTAATGGCTGCCGGTGCTGTGATGGCTGAGGCGACAAGAAACTTAGCGGCAAATCCAATCGAATTTCTGTTTGATCTGGACATGGTTTTGTCGGGAGCCGACGACTTCGGATGCTGCCAGATCAGCGTTTCCGATTCCGATTCTCTGGTGGCGGATTTGCCGACGGTGCTCGCCGATGTTTGCGCCGTTTGTTTGGAGGATTTCCGGCCAGATGAGGGCGGAAAACAAATCCCCTGCGGCCACGTGTACCACGAGTCTTGTATTTCCTCTTGGCTCGCCGTCGGCGACTGTTGCCCTCTCTGTCGGTGTCTTGTCGCCGGCCAACCACCGGAAGTTCCTTCCACTTTGATCCGACGGTAG

mRNA sequence

CTCACAAGTAGAGAAGAGAACCCGCTATCTACTCCATCTCCCTAGTTCCTAAACCACTCTTTTTTTTTCTCTCTCTAATGGCTGCCGGTGCTGTGATGGCTGAGGCGACAAGAAACTTAGCGGCAAATCCAATCGAATTTCTGTTTGATCTGGACATGGTTTTGTCGGGAGCCGACGACTTCGGATGCTGCCAGATCAGCGTTTCCGATTCCGATTCTCTGGTGGCGGATTTGCCGACGGTGCTCGCCGATGTTTGCGCCGTTTGTTTGGAGGATTTCCGGCCAGATGAGGGCGGAAAACAAATCCCCTGCGGCCACGTGTACCACGAGTCTTGTATTTCCTCTTGGCTCGCCGTCGGCGACTGTTGCCCTCTCTGTCGGTGTCTTGTCGCCGGCCAACCACCGGAAGTTCCTTCCACTTTGATCCGACGGTAG

Coding sequence (CDS)

ATGGCTGCCGGTGCTGTGATGGCTGAGGCGACAAGAAACTTAGCGGCAAATCCAATCGAATTTCTGTTTGATCTGGACATGGTTTTGTCGGGAGCCGACGACTTCGGATGCTGCCAGATCAGCGTTTCCGATTCCGATTCTCTGGTGGCGGATTTGCCGACGGTGCTCGCCGATGTTTGCGCCGTTTGTTTGGAGGATTTCCGGCCAGATGAGGGCGGAAAACAAATCCCCTGCGGCCACGTGTACCACGAGTCTTGTATTTCCTCTTGGCTCGCCGTCGGCGACTGTTGCCCTCTCTGTCGGTGTCTTGTCGCCGGCCAACCACCGGAAGTTCCTTCCACTTTGATCCGACGGTAG

Protein sequence

MAAGAVMAEATRNLAANPIEFLFDLDMVLSGADDFGCCQISVSDSDSLVADLPTVLADVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCRCLVAGQPPEVPSTLIRR

Homology

[Close]

BLAST of Tan0013938 vs. ExPASy Swiss-Prot
Match: Q91YL2 (E3 ubiquitin-protein ligase RNF126 OS=Mus musculus OX=10090 GN=Rnf126 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 8.9e-09
Identity = 23/48 (47.92%), Postives = 31/48 (64.58%), Query Frame = 0


Query: 60  CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCRCLVAGQ 108
           C VC ED+   E  +Q+PC H++H+SCI  WL   D CP+CR  + GQ
Sbjct: 231 CPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 278

[Close]

BLAST of Tan0013938 vs. ExPASy Swiss-Prot
Match: Q9VHI7 (E3 ubiquitin-protein ligase Iruka OS=Drosophila melanogaster OX=7227 GN=Iru PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-08
Identity = 20/42 (47.62%), Postives = 31/42 (73.81%), Query Frame = 0


Query: 60  CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCR 102
           C++C +DF+ DE  +++PC H+YHE+CI  WL +   CP+CR
Sbjct: 253 CSICWDDFKIDETVRKLPCSHLYHENCIVPWLNLHSTCPICR 294

[Close]

BLAST of Tan0013938 vs. ExPASy Swiss-Prot
Match: Q6IRP0 (E3 ubiquitin-protein ligase RNF126-B OS=Xenopus laevis OX=8355 GN=rnf126-b PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.6e-08
Identity = 22/48 (45.83%), Postives = 30/48 (62.50%), Query Frame = 0


Query: 60  CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCRCLVAGQ 108
           C VC ED+   E  +Q+PC H++H  CI  WL   D CP+CR  ++GQ
Sbjct: 228 CPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSLSGQ 275

[Close]

BLAST of Tan0013938 vs. ExPASy Swiss-Prot
Match: Q9Y4L5 (E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens OX=9606 GN=RNF115 PE=1 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 2.6e-08
Identity = 22/48 (45.83%), Postives = 31/48 (64.58%), Query Frame = 0


Query: 60  CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCRCLVAGQ 108
           C VC ED+  +E  +Q+PC H +H SCI  WL + D CP+CR  + G+
Sbjct: 228 CPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSLNGE 275

[Close]

BLAST of Tan0013938 vs. ExPASy Swiss-Prot
Match: Q9D0C1 (E3 ubiquitin-protein ligase RNF115 OS=Mus musculus OX=10090 GN=Rnf115 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.6e-08
Identity = 22/48 (45.83%), Postives = 31/48 (64.58%), Query Frame = 0


Query: 60  CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCRCLVAGQ 108
           C VC ED+  +E  +Q+PC H +H SCI  WL + D CP+CR  + G+
Sbjct: 229 CPVCKEDYTVEEKVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSLNGE 276

[Close]

BLAST of Tan0013938 vs. NCBI nr
Match: XP_023545409.1 (E3 ubiquitin-protein ligase RING1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 207.6 bits (527), Expect = 5.9e-50
Identity = 104/120 (86.67%), Postives = 108/120 (90.00%), Query Frame = 0


Query: 1   MAAGAVMAEATRNLA-ANPIEFLFDLDMVLSGADDFGCCQISVSDSDSLVADLPTVLADV 60
           MAA +V AE TRNLA A PIEFLFDLDMVLSGADDFGCCQIS   SDSLVADLPTV+ADV
Sbjct: 1   MAAVSVSAETTRNLAVAYPIEFLFDLDMVLSGADDFGCCQISA--SDSLVADLPTVVADV 60

Query: 61  CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCRCLVAGQPPEVP-STLIRR 119
           CAVCLEDFRPDE GKQIPCGHVYHESCISSWLAV +CCPLCRCL+AGQPPE P STLIRR
Sbjct: 61  CAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLIAGQPPESPSSTLIRR 118

[Close]

BLAST of Tan0013938 vs. NCBI nr
Match: XP_022946863.1 (E3 ubiquitin-protein ligase RING1-like [Cucurbita moschata])

HSP 1 Score: 207.6 bits (527), Expect = 5.9e-50
Identity = 104/120 (86.67%), Postives = 108/120 (90.00%), Query Frame = 0


Query: 1   MAAGAVMAEATRNL-AANPIEFLFDLDMVLSGADDFGCCQISVSDSDSLVADLPTVLADV 60
           MAA +V AE TRNL AA PIEFLFDLDMVLSGADDFGCCQIS   SDSLVADLPTV+ADV
Sbjct: 1   MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISA--SDSLVADLPTVVADV 60

Query: 61  CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCRCLVAGQPPEVP-STLIRR 119
           CAVCLEDFRPDE GKQIPCGHVYHESCISSWLAV +CCPLCRCL+AGQPPE P STLIRR
Sbjct: 61  CAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLIAGQPPESPSSTLIRR 118

[Close]

BLAST of Tan0013938 vs. NCBI nr
Match: KAG7030453.1 (E3 ubiquitin-protein ligase RING1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 206.5 bits (524), Expect = 1.3e-49
Identity = 103/120 (85.83%), Postives = 108/120 (90.00%), Query Frame = 0


Query: 1   MAAGAVMAEATRNL-AANPIEFLFDLDMVLSGADDFGCCQISVSDSDSLVADLPTVLADV 60
           MAA +V AE TRNL AA PIEFLFDLDMVLSGADDFGCCQIS   SDSLVADLPTV+ADV
Sbjct: 1   MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISA--SDSLVADLPTVVADV 60

Query: 61  CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCRCLVAGQPPEVP-STLIRR 119
           CAVCLEDFRPDE GKQIPCGHVYHESCISSWLAV +CCPLCRCL++GQPPE P STLIRR
Sbjct: 61  CAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLISGQPPESPSSTLIRR 118

[Close]

BLAST of Tan0013938 vs. NCBI nr
Match: KAG6599476.1 (E3 ubiquitin-protein ligase RING1-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 206.5 bits (524), Expect = 1.3e-49
Identity = 103/120 (85.83%), Postives = 108/120 (90.00%), Query Frame = 0


Query: 1   MAAGAVMAEATRNL-AANPIEFLFDLDMVLSGADDFGCCQISVSDSDSLVADLPTVLADV 60
           MAA +V AE TRNL AA PIEFLFDLDMVLSGADDFGCCQIS   SDSLVADLPTV+ADV
Sbjct: 1   MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISA--SDSLVADLPTVVADV 60

Query: 61  CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCRCLVAGQPPEVP-STLIRR 119
           CAVCLEDFRPDE GKQIPCGHVYHESCISSWLAV +CCPLCRCL++GQPPE P STLIRR
Sbjct: 61  CAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLISGQPPESPSSTLIRR 118

[Close]

BLAST of Tan0013938 vs. NCBI nr
Match: XP_038877422.1 (E3 ubiquitin-protein ligase RNF181-like [Benincasa hispida])

HSP 1 Score: 198.4 bits (503), Expect = 3.5e-47
Identity = 99/119 (83.19%), Postives = 102/119 (85.71%), Query Frame = 0


Query: 1   MAAGAVMAEATRNLAAN-PIEFLFDLDMVLSGADDFGCCQISVSDSDSLVADLPTVLADV 60
           MAA AVM E TRNL A  PIEFLFDLDMVLSGADDFGCCQIS   +DSLVADLP V+ADV
Sbjct: 1   MAAAAVMTEPTRNLPATYPIEFLFDLDMVLSGADDFGCCQISA--TDSLVADLPIVVADV 60

Query: 61  CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCRCLVAGQPPEVPSTLIRR 119
           CAVCLEDF PDE GKQIPCGHVYHESCISSWL V DCCPLCRC VAGQPP+  STLIRR
Sbjct: 61  CAVCLEDFLPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCHVAGQPPD--STLIRR 115

[Close]

BLAST of Tan0013938 vs. ExPASy TrEMBL
Match: A0A6J1G511 (E3 ubiquitin-protein ligase RING1-like OS=Cucurbita moschata OX=3662 GN=LOC111450796 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 2.8e-50
Identity = 104/120 (86.67%), Postives = 108/120 (90.00%), Query Frame = 0


Query: 1   MAAGAVMAEATRNL-AANPIEFLFDLDMVLSGADDFGCCQISVSDSDSLVADLPTVLADV 60
           MAA +V AE TRNL AA PIEFLFDLDMVLSGADDFGCCQIS   SDSLVADLPTV+ADV
Sbjct: 1   MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISA--SDSLVADLPTVVADV 60

Query: 61  CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCRCLVAGQPPEVP-STLIRR 119
           CAVCLEDFRPDE GKQIPCGHVYHESCISSWLAV +CCPLCRCL+AGQPPE P STLIRR
Sbjct: 61  CAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLIAGQPPESPSSTLIRR 118

[Close]

BLAST of Tan0013938 vs. ExPASy TrEMBL
Match: A0A0A0LKR7 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G000930 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.4e-44
Identity = 94/119 (78.99%), Postives = 99/119 (83.19%), Query Frame = 0


Query: 1   MAAGAVMAEATRNL-AANPIEFLFDLDMVLSGADDFGCCQISVSDSDSLVADLPTVLADV 60
           MAA AVM E T NL +  PIEFLFDLD VLSGADD GCCQI+ SDS   VAD PTV+ADV
Sbjct: 1   MAAAAVMTEPTINLPSPYPIEFLFDLDTVLSGADDLGCCQITPSDSP--VADFPTVVADV 60

Query: 61  CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCRCLVAGQPPEVPSTLIRR 119
           CAVCL+DF PDE GKQIPCGHVYHESCISSWL V DCCPLCRCLVAGQPP+  STLIRR
Sbjct: 61  CAVCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPD--STLIRR 115

[Close]

BLAST of Tan0013938 vs. ExPASy TrEMBL
Match: A0A5A7V2P4 (RING-H2 finger protein ATL5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00540 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 2.8e-42
Identity = 93/120 (77.50%), Postives = 98/120 (81.67%), Query Frame = 0


Query: 1   MAAGAVMAEATRNL-AANPIEFLFDLDMVLSGADDFGC-CQISVSDSDSLVADLPTVLAD 60
           MAA AVM E T  L +  PIEFLFDLD VLSGADD  C CQI+ SDS   VAD PTV+AD
Sbjct: 1   MAAAAVMTEPTVTLPSPYPIEFLFDLDTVLSGADDLDCSCQITPSDSP--VADFPTVVAD 60

Query: 61  VCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCRCLVAGQPPEVPSTLIRR 119
           VCAVCL+DFRPDE GKQIPCGHVYHESCISSWL V DCCPLCRCLVAGQPP+  STLIRR
Sbjct: 61  VCAVCLDDFRPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPD--STLIRR 116

[Close]

BLAST of Tan0013938 vs. ExPASy TrEMBL
Match: A0A1S4DZX3 (RING-H2 finger protein ATL5-like OS=Cucumis melo OX=3656 GN=LOC107991276 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 2.8e-42
Identity = 93/120 (77.50%), Postives = 98/120 (81.67%), Query Frame = 0


Query: 1   MAAGAVMAEATRNL-AANPIEFLFDLDMVLSGADDFGC-CQISVSDSDSLVADLPTVLAD 60
           MAA AVM E T  L +  PIEFLFDLD VLSGADD  C CQI+ SDS   VAD PTV+AD
Sbjct: 1   MAAAAVMTEPTVTLPSPYPIEFLFDLDTVLSGADDLDCSCQITPSDSP--VADFPTVVAD 60

Query: 61  VCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCRCLVAGQPPEVPSTLIRR 119
           VCAVCL+DFRPDE GKQIPCGHVYHESCISSWL V DCCPLCRCLVAGQPP+  STLIRR
Sbjct: 61  VCAVCLDDFRPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPD--STLIRR 116

[Close]

BLAST of Tan0013938 vs. ExPASy TrEMBL
Match: A0A6J1DM93 (E3 ubiquitin-protein ligase RHA1B-like OS=Momordica charantia OX=3673 GN=LOC111021870 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.8e-41
Identity = 89/118 (75.42%), Postives = 98/118 (83.05%), Query Frame = 0


Query: 1   MAAGAVMAEATRNL-AANPIEFLFDLDMVLSGADDFGCCQISVSD-SDSLVADLPTVLAD 60
           MAA AV+AE TRNL AA P+E LFDLDMVLSG DDFGCC ++ ++ SDS+VADLPTV+AD
Sbjct: 1   MAAVAVLAETTRNLAAAYPMELLFDLDMVLSGDDDFGCCHVTAANSSDSIVADLPTVVAD 60

Query: 61  VCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCRCLVAGQPPEVPSTLI 117
           VCAVC EDFR DEGGKQIPCGHVYHE CISSWLAV DCCPLCR  V  +PP  PST I
Sbjct: 61  VCAVCFEDFRSDEGGKQIPCGHVYHEPCISSWLAVADCCPLCRRRV--EPPPPPSTSI 116

[Close]

BLAST of Tan0013938 vs. TAIR 10
Match: AT1G68180.1 (RING/U-box superfamily protein )

HSP 1 Score: 65.1 bits (157), Expect = 4.4e-11
Identity = 25/54 (46.30%), Postives = 35/54 (64.81%), Query Frame = 0


Query: 48  LVADLPTVLADVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCR 102
           ++ D   V   VCA+C E+F   E GK++ C H+YH SCI SWL + + CP+CR
Sbjct: 126 IITDEDLVKEKVCAICKEEFEVGEEGKELKCLHLYHSSCIVSWLNIHNTCPICR 179

[Close]

BLAST of Tan0013938 vs. TAIR 10
Match: AT3G60080.1 (RING/U-box superfamily protein )

HSP 1 Score: 62.4 bits (150), Expect = 2.8e-10
Identity = 27/64 (42.19%), Postives = 36/64 (56.25%), Query Frame = 0


Query: 38  CQISVSDSDSLVADLPTVLADVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCC 97
           C    SD DS++         +CAVC EDF   E  +++PC H+YH  CI  WL+  + C
Sbjct: 156 CSTDDSDPDSVL---------LCAVCKEDFIIGESARRLPCSHIYHSDCIVPWLSDHNSC 210

Query: 98  PLCR 102
           PLCR
Sbjct: 216 PLCR 210

[Close]

BLAST of Tan0013938 vs. TAIR 10
Match: AT2G44330.1 (RING/U-box superfamily protein )

HSP 1 Score: 59.3 bits (142), Expect = 2.4e-09
Identity = 21/42 (50.00%), Postives = 27/42 (64.29%), Query Frame = 0


Query: 60  CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCR 102
           CA+C EDF   E  +++PC H+YH  CI  WL   + CPLCR
Sbjct: 96  CAICREDFVVGESARRLPCNHLYHNDCIIPWLTSHNSCPLCR 137

[Close]

BLAST of Tan0013938 vs. TAIR 10
Match: AT3G02340.1 (RING/U-box superfamily protein )

HSP 1 Score: 58.5 bits (140), Expect = 4.1e-09
Identity = 37/123 (30.08%), Postives = 54/123 (43.90%), Query Frame = 0


Query: 9   EATRNLAANPIEFLFDLDMVLSGADDFGCCQISVSDSD---------------------S 68
           E    +  NP +   D  + LSG D+F        D+D                     S
Sbjct: 254 EQAEGIMLNPDDIDPDYYLYLSGLDEFDENHSGHYDADAILGQMFDDETGIRGNPPAAKS 313

Query: 69  LVADLPTV-LA--------DVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCP 102
           ++ DLP V LA        +VCAVC ++   +E  +++PC H YH  CI  WL + + CP
Sbjct: 314 VIQDLPVVELAVEELDKGNNVCAVCKDEMLVEEKVRRLPCSHFYHGECIIPWLGIRNTCP 373

[Close]

BLAST of Tan0013938 vs. TAIR 10
Match: AT3G19950.1 (RING/U-box superfamily protein )

HSP 1 Score: 58.5 bits (140), Expect = 4.1e-09
Identity = 26/75 (34.67%), Postives = 40/75 (53.33%), Query Frame = 0


Query: 45  SDSLVADLPTVLA---------DVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGD 104
           S S +  LPTV           + CAVC+++F      KQ+PC HV+H+ C+  WL + +
Sbjct: 192 SKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHN 251

Query: 105 CCPLCRCLVAGQPPE 111
            CP+CR  +    P+
Sbjct: 252 SCPVCRFELPTDDPD 266

The following BLAST results are available for this feature:

BLAST of Tan0013938 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q91YL2	8.9e-09	47.92	E3 ubiquitin-protein ligase RNF126 OS=Mus musculus OX=10090 GN=Rnf126 PE=1 SV=1	[more]
Q9VHI7	1.2e-08	47.62	E3 ubiquitin-protein ligase Iruka OS=Drosophila melanogaster OX=7227 GN=Iru PE=1...	[more]
Q6IRP0	2.6e-08	45.83	E3 ubiquitin-protein ligase RNF126-B OS=Xenopus laevis OX=8355 GN=rnf126-b PE=2 ...	[more]
Q9Y4L5	2.6e-08	45.83	E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens OX=9606 GN=RNF115 PE=1 SV=2	[more]
Q9D0C1	2.6e-08	45.83	E3 ubiquitin-protein ligase RNF115 OS=Mus musculus OX=10090 GN=Rnf115 PE=1 SV=1	[more]

BLAST of Tan0013938 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023545409.1	5.9e-50	86.67	E3 ubiquitin-protein ligase RING1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022946863.1	5.9e-50	86.67	E3 ubiquitin-protein ligase RING1-like [Cucurbita moschata]	[more]
KAG7030453.1	1.3e-49	85.83	E3 ubiquitin-protein ligase RING1, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6599476.1	1.3e-49	85.83	E3 ubiquitin-protein ligase RING1-like protein, partial [Cucurbita argyrosperma ...	[more]
XP_038877422.1	3.5e-47	83.19	E3 ubiquitin-protein ligase RNF181-like [Benincasa hispida]	[more]

BLAST of Tan0013938 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G511	2.8e-50	86.67	E3 ubiquitin-protein ligase RING1-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A0A0LKR7	1.4e-44	78.99	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G000930 P...	[more]
A0A5A7V2P4	2.8e-42	77.50	RING-H2 finger protein ATL5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S4DZX3	2.8e-42	77.50	RING-H2 finger protein ATL5-like OS=Cucumis melo OX=3656 GN=LOC107991276 PE=4 SV...	[more]
A0A6J1DM93	1.8e-41	75.42	E3 ubiquitin-protein ligase RHA1B-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]

BLAST of Tan0013938 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68180.1	4.4e-11	46.30	RING/U-box superfamily protein	[more]
AT3G60080.1	2.8e-10	42.19	RING/U-box superfamily protein	[more]
AT2G44330.1	2.4e-09	50.00	RING/U-box superfamily protein	[more]
AT3G02340.1	4.1e-09	30.08	RING/U-box superfamily protein	[more]
AT3G19950.1	4.1e-09	34.67	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 60..100 e-value: 3.3E-7 score: 40.0
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 59..101 e-value: 2.7E-11 score: 43.6
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 60..101 score: 12.607302
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 54..112 e-value: 2.8E-16 score: 60.4
None	No IPR available	PANTHER	PTHR15710:SF74	E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE	coord: 19..104
None	No IPR available	PANTHER	PTHR15710	E3 UBIQUITIN-PROTEIN LIGASE PRAJA	coord: 19..104
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 59..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0013938.1	Tan0013938.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0061630	ubiquitin protein ligase activity