Tan0013931 (gene) Snake gourd v1

Overview


Name	Tan0013931
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Location	LG11: 44817093 .. 44817437 (+)
RNA-Seq Expression	Tan0013931
Synteny	Tan0013931

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTAGCTCTATAATTTCCTTATTGGGTGCGGAAATGTTAACCGGAGAGAATATGATGACATGGAAAAACAAACTCAACACTATTTTGGTAGTGGATAATCTGAAGTTTGTGCTAACTGAGGAGTGTCCTCAGGTGCCAGGCTCGAATGCGTCACGAAATGTTCGTGATTCATATGATCGATGGATCAAGGCCAATGAAAAGGCCAAGGTCTACATGTTGGCAAGTATGTCTGACATATTAGCCAAGAATCATGAGGGCATGATTACCGCCAAGGAAATCATGGATTACGTGCGCGAGGTATGTTTGGACAACAGTCCACACAAGCCCGACATAATGCCCTAA

mRNA sequence

ATGTCTAGCTCTATAATTTCCTTATTGGGTGCGGAAATGTTAACCGGAGAGAATATGATGACATGGAAAAACAAACTCAACACTATTTTGGTAGTGGATAATCTGAAGTTTGTGCTAACTGAGGAGTGTCCTCAGGTGCCAGGCTCGAATGCGTCACGAAATGTTCGTGATTCATATGATCGATGGATCAAGGCCAATGAAAAGGCCAAGGTCTACATGTTGGCAAGTATGTCTGACATATTAGCCAAGAATCATGAGGGCATGATTACCGCCAAGGAAATCATGGATTACGTGCGCGAGGTATGTTTGGACAACAGTCCACACAAGCCCGACATAATGCCCTAA

Coding sequence (CDS)

ATGTCTAGCTCTATAATTTCCTTATTGGGTGCGGAAATGTTAACCGGAGAGAATATGATGACATGGAAAAACAAACTCAACACTATTTTGGTAGTGGATAATCTGAAGTTTGTGCTAACTGAGGAGTGTCCTCAGGTGCCAGGCTCGAATGCGTCACGAAATGTTCGTGATTCATATGATCGATGGATCAAGGCCAATGAAAAGGCCAAGGTCTACATGTTGGCAAGTATGTCTGACATATTAGCCAAGAATCATGAGGGCATGATTACCGCCAAGGAAATCATGGATTACGTGCGCGAGGTATGTTTGGACAACAGTCCACACAAGCCCGACATAATGCCCTAA

Protein sequence

MSSSIISLLGAEMLTGENMMTWKNKLNTILVVDNLKFVLTEECPQVPGSNASRNVRDSYDRWIKANEKAKVYMLASMSDILAKNHEGMITAKEIMDYVREVCLDNSPHKPDIMP

Homology

[Close]

BLAST of Tan0013931 vs. NCBI nr
Match: XP_038882358.1 (uncharacterized protein LOC120073622 [Benincasa hispida])

HSP 1 Score: 146.0 bits (367), Expect = 2.0e-31
Identity = 68/101 (67.33%), Postives = 86/101 (85.15%), Query Frame = 0


Query: 1   MSSSIISLLGAEMLTGENMMTWKNKLNTILVVDNLKFVLTEECPQVPGSNASRNVRDSYD 60
           M+SSII LL +E L G+N   WK+ LNTILVVD+L+FVLTEECPQ P SNA+R VR++YD
Sbjct: 1   MNSSIIQLLTSEKLNGDNYSAWKSNLNTILVVDDLRFVLTEECPQAPTSNANRTVREAYD 60

Query: 61  RWIKANEKAKVYMLASMSDILAKNHEGMITAKEIMDYVREV 102
           RW+KANEKA++Y+LASMSD+LAK HE + TAKEI+D +RE+
Sbjct: 61  RWVKANEKARIYILASMSDVLAKKHESLATAKEIIDSLREL 101

[Close]

BLAST of Tan0013931 vs. NCBI nr
Match: XP_022157844.1 (uncharacterized protein LOC111024457 [Momordica charantia])

HSP 1 Score: 145.2 bits (365), Expect = 3.4e-31
Identity = 66/99 (66.67%), Postives = 86/99 (86.87%), Query Frame = 0


Query: 1   MSSSIISLLGAEMLTGENMMTWKNKLNTILVVDNLKFVLTEECPQVPGSNASRNVRDSYD 60
           M+SSI+ LL +E L G N  TWKN LNTILVVD+L+FVLTEECPQ P +NA+RNVR+++D
Sbjct: 1   MNSSIVQLLASEKLNGVNYSTWKNNLNTILVVDDLRFVLTEECPQTPATNANRNVREAFD 60

Query: 61  RWIKANEKAKVYMLASMSDILAKNHEGMITAKEIMDYVR 100
           RW+KAN+KA+VY+LASM+D+LAK HE ++TAKEIMD ++
Sbjct: 61  RWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLK 99

[Close]

BLAST of Tan0013931 vs. NCBI nr
Match: XP_022157632.1 (uncharacterized protein LOC111024294 [Momordica charantia])

HSP 1 Score: 144.4 bits (363), Expect = 5.9e-31
Identity = 66/99 (66.67%), Postives = 85/99 (85.86%), Query Frame = 0


Query: 1   MSSSIISLLGAEMLTGENMMTWKNKLNTILVVDNLKFVLTEECPQVPGSNASRNVRDSYD 60
           M+SSI+ LL +E L G N  TWKN LNTILVVD+L+FVLTEECPQ P  NA+RNVR+++D
Sbjct: 1   MNSSIVQLLASEKLNGVNYSTWKNNLNTILVVDDLQFVLTEECPQTPAENANRNVREAFD 60

Query: 61  RWIKANEKAKVYMLASMSDILAKNHEGMITAKEIMDYVR 100
           RW+KAN+KA+VY+LASM+D+LAK HE ++TAKEIMD ++
Sbjct: 61  RWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLK 99

[Close]

BLAST of Tan0013931 vs. NCBI nr
Match: XP_022157095.1 (uncharacterized protein LOC111023904 [Momordica charantia])

HSP 1 Score: 144.1 bits (362), Expect = 7.7e-31
Identity = 66/99 (66.67%), Postives = 85/99 (85.86%), Query Frame = 0


Query: 1   MSSSIISLLGAEMLTGENMMTWKNKLNTILVVDNLKFVLTEECPQVPGSNASRNVRDSYD 60
           M+SSI+ LL +E L G N  TWKN LNTILVVD+L+FVLTEECPQ P  NA+RNVR+++D
Sbjct: 1   MNSSIVQLLASEKLNGVNYSTWKNNLNTILVVDDLRFVLTEECPQTPAVNANRNVREAFD 60

Query: 61  RWIKANEKAKVYMLASMSDILAKNHEGMITAKEIMDYVR 100
           RW+KAN+KA+VY+LASM+D+LAK HE ++TAKEIMD ++
Sbjct: 61  RWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLK 99

[Close]

BLAST of Tan0013931 vs. NCBI nr
Match: XP_022143540.1 (uncharacterized protein LOC111013417 [Momordica charantia])

HSP 1 Score: 143.7 bits (361), Expect = 1.0e-30
Identity = 65/99 (65.66%), Postives = 85/99 (85.86%), Query Frame = 0


Query: 1   MSSSIISLLGAEMLTGENMMTWKNKLNTILVVDNLKFVLTEECPQVPGSNASRNVRDSYD 60
           M+SSI+ L  +E L G N  TWKN LNTILVVD+L+FVLTEECPQ P +NA+RNVR+++D
Sbjct: 1   MNSSIVQLFASEKLNGVNYSTWKNNLNTILVVDDLRFVLTEECPQTPAANANRNVREAFD 60

Query: 61  RWIKANEKAKVYMLASMSDILAKNHEGMITAKEIMDYVR 100
           RW+KAN+KA+VY+LASM+D+LAK HE ++TAKEIMD ++
Sbjct: 61  RWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLK 99

[Close]

BLAST of Tan0013931 vs. ExPASy TrEMBL
Match: A0A6J1DXQ5 (uncharacterized protein LOC111024457 OS=Momordica charantia OX=3673 GN=LOC111024457 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.7e-31
Identity = 66/99 (66.67%), Postives = 86/99 (86.87%), Query Frame = 0


Query: 1   MSSSIISLLGAEMLTGENMMTWKNKLNTILVVDNLKFVLTEECPQVPGSNASRNVRDSYD 60
           M+SSI+ LL +E L G N  TWKN LNTILVVD+L+FVLTEECPQ P +NA+RNVR+++D
Sbjct: 1   MNSSIVQLLASEKLNGVNYSTWKNNLNTILVVDDLRFVLTEECPQTPATNANRNVREAFD 60

Query: 61  RWIKANEKAKVYMLASMSDILAKNHEGMITAKEIMDYVR 100
           RW+KAN+KA+VY+LASM+D+LAK HE ++TAKEIMD ++
Sbjct: 61  RWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLK 99

[Close]

BLAST of Tan0013931 vs. ExPASy TrEMBL
Match: A0A6J1DUZ9 (uncharacterized protein LOC111024294 OS=Momordica charantia OX=3673 GN=LOC111024294 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.8e-31
Identity = 66/99 (66.67%), Postives = 85/99 (85.86%), Query Frame = 0


Query: 1   MSSSIISLLGAEMLTGENMMTWKNKLNTILVVDNLKFVLTEECPQVPGSNASRNVRDSYD 60
           M+SSI+ LL +E L G N  TWKN LNTILVVD+L+FVLTEECPQ P  NA+RNVR+++D
Sbjct: 1   MNSSIVQLLASEKLNGVNYSTWKNNLNTILVVDDLQFVLTEECPQTPAENANRNVREAFD 60

Query: 61  RWIKANEKAKVYMLASMSDILAKNHEGMITAKEIMDYVR 100
           RW+KAN+KA+VY+LASM+D+LAK HE ++TAKEIMD ++
Sbjct: 61  RWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLK 99

[Close]

BLAST of Tan0013931 vs. ExPASy TrEMBL
Match: A0A6J1DS54 (uncharacterized protein LOC111023904 OS=Momordica charantia OX=3673 GN=LOC111023904 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 3.7e-31
Identity = 66/99 (66.67%), Postives = 85/99 (85.86%), Query Frame = 0


Query: 1   MSSSIISLLGAEMLTGENMMTWKNKLNTILVVDNLKFVLTEECPQVPGSNASRNVRDSYD 60
           M+SSI+ LL +E L G N  TWKN LNTILVVD+L+FVLTEECPQ P  NA+RNVR+++D
Sbjct: 1   MNSSIVQLLASEKLNGVNYSTWKNNLNTILVVDDLRFVLTEECPQTPAVNANRNVREAFD 60

Query: 61  RWIKANEKAKVYMLASMSDILAKNHEGMITAKEIMDYVR 100
           RW+KAN+KA+VY+LASM+D+LAK HE ++TAKEIMD ++
Sbjct: 61  RWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLK 99

[Close]

BLAST of Tan0013931 vs. ExPASy TrEMBL
Match: A0A6J1CP29 (uncharacterized protein LOC111013417 OS=Momordica charantia OX=3673 GN=LOC111013417 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 4.9e-31
Identity = 65/99 (65.66%), Postives = 85/99 (85.86%), Query Frame = 0


Query: 1   MSSSIISLLGAEMLTGENMMTWKNKLNTILVVDNLKFVLTEECPQVPGSNASRNVRDSYD 60
           M+SSI+ L  +E L G N  TWKN LNTILVVD+L+FVLTEECPQ P +NA+RNVR+++D
Sbjct: 1   MNSSIVQLFASEKLNGVNYSTWKNNLNTILVVDDLRFVLTEECPQTPAANANRNVREAFD 60

Query: 61  RWIKANEKAKVYMLASMSDILAKNHEGMITAKEIMDYVR 100
           RW+KAN+KA+VY+LASM+D+LAK HE ++TAKEIMD ++
Sbjct: 61  RWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLK 99

[Close]

BLAST of Tan0013931 vs. ExPASy TrEMBL
Match: A0A5A7U2U6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00570 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 4.1e-30
Identity = 64/101 (63.37%), Postives = 85/101 (84.16%), Query Frame = 0


Query: 1   MSSSIISLLGAEMLTGENMMTWKNKLNTILVVDNLKFVLTEECPQVPGSNASRNVRDSYD 60
           M++SI+ LL ++ L G+N  TWK+ LN ILV+D+L+FVLTEE PQ P SNA++NVR++YD
Sbjct: 1   MNNSIVQLLASQKLNGDNYATWKSNLNKILVIDDLRFVLTEERPQTPASNANQNVREAYD 60

Query: 61  RWIKANEKAKVYMLASMSDILAKNHEGMITAKEIMDYVREV 102
           RW+KANEKA+VY+ ASMSD+LAK HE + TAKEIMD +RE+
Sbjct: 61  RWVKANEKARVYIFASMSDVLAKKHESLATAKEIMDSLREM 101

The following BLAST results are available for this feature:

BLAST of Tan0013931 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0013931 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882358.1	2.0e-31	67.33	uncharacterized protein LOC120073622 [Benincasa hispida]	[more]
XP_022157844.1	3.4e-31	66.67	uncharacterized protein LOC111024457 [Momordica charantia]	[more]
XP_022157632.1	5.9e-31	66.67	uncharacterized protein LOC111024294 [Momordica charantia]	[more]
XP_022157095.1	7.7e-31	66.67	uncharacterized protein LOC111023904 [Momordica charantia]	[more]
XP_022143540.1	1.0e-30	65.66	uncharacterized protein LOC111013417 [Momordica charantia]	[more]

BLAST of Tan0013931 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DXQ5	1.7e-31	66.67	uncharacterized protein LOC111024457 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1DUZ9	2.8e-31	66.67	uncharacterized protein LOC111024294 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1DS54	3.7e-31	66.67	uncharacterized protein LOC111023904 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1CP29	4.9e-31	65.66	uncharacterized protein LOC111013417 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A5A7U2U6	4.1e-30	63.37	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G0057...	[more]

BLAST of Tan0013931 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0013931.1	Tan0013931.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding