Tan0013870 (gene) Snake gourd v1

Overview


Name	Tan0013870
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG08: 9145597 .. 9147901 (-)
RNA-Seq Expression	Tan0013870
Synteny	Tan0013870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGATGGTACTTCAGAGTGCACTTCCTACAAATCCTTGTTGTTTGTCTGGCGAACCCTTCCACATTCGTTGTATATCATAATTGCACTTTCTGATTCCAAAAAGGAATAAAAATTAGCACAAAACAATTGACGAAAATTAAACGAGCTTCCTTCTTATCTCTCTCTAAATCTCTCTTTTTCTCTCAACCTTCTTATCAGAATCGTCACTTCAACTTGGTCGTTGAATCGATTTCAGAAAAAAAAAACAGGAAAAAACAAATGACTTTGCCTAGTGACTACGTACCACAAATCAAATTACAAACACAATCCATCAACAATACACAAATCACATTCATAACTTAACTAGAAGCAGAGCATCTCAAAATTAGAGTAAAAAAATAGTATTAGAGCATCTCAAAATACTAACTTAACTAGAAGCAGAGCATCTCACATTCATAACCTAACCAGACGGATCTCCAGCGACCCGATCGATTTGTTGTTCGCTCTGCACCTTCAATACACGTAATCGAGGTGTTCTTCCACGACGATGTAGCAATCCTGCAGCACGATCAAGAAATCGAGGGCGGCGGCGGCGGTGGAGAAGAGATTCAGAGAGTGGAGGCGGATCTCCCAGTACAAGACGTAGTGACTGGGGATGGAGGAGGTGTCAGTGAAGCTTGTGTATTCGGCGAGAAGATCGTTGTAGGGCTCGAGAAGCTTCTTGGCTATGGCGATGTTCTTGTGGAGGTCTTGCTCGTTCGCCTTGTCGTTATCGATGCTCAGAACCGTGAGGAGCGATTGCAAGGAGCAACGATGAAAACTCTGGAAAGAAAAGGAGGCGTGGGTATGTTTACAATCATGAACATTAGGGTTGAACTAATTTATAAGCTAACAAACAATGACAGAAAAATTTATTTTTATTTTAAAAATCATATATATGAGAATCAATAACGGGCATTGCCCGACATTATAGAGGTAAAAATCCGAAAATGAACGTCAATCCCGCGTTTTCCAATGTCCGTCATTATTTCTTTTAAGTGAAATTTTTAGACTGTCATTAAAGGTCTAATTTTTTGTAGTGATAATGTCAATAACATTATACTCGAATTTCAACCCTTAAAAGTAACAAAAGAAACTGACAAGGAAGAATAACAAGAACAAAAGAAGAAAAAGAAACAATAAAAAAAAACCCAACCAATAATCGATTTGAAGATGATCAAAATCAAAGAAATTACAAGGAAAATAAGAAAAAAAATAAAAGATCTTTCAAGTTGAGGGCAATTTAAATACAATGAGTACAAGTATTGGTCCATGAGTAGAGCTTCAATGGGATCCTTCAACCACCATGTTCTCAAGCTTTAACAACACCAACAAAAAAAAAAAATAATAATAAATGAAACTATTAGACAGAGGAAAAATAAAACACACTCCTGTGGCTTAAATTACAATATCATGCACACTACTCATAATTTTAGAATTTTCTTTTTGTGGCTTTATGCGAGTTTTAGGATACTTTGTTGTAGTTGGAGGCAACAAAAAATCAAACACACTATTGTGGCTTAAACAAGATCAAGCAATATAGCACCATAAAGACAACTTTAAGTACCTTCAAATGAAATCAAAGAACAAAAATTCAAATATAACAAAAAAAAATGAGTATCTTAAAAAAGAATAATAAGCCTACCTTCCTTTACCTTTGTTACCCTTTAGCTGCTCAATGTTCTAAAATCTTCCTCGATAGTTAGAGTCATCATTTGGTTAATCTTCTATAGCATATATGTCAAAATTAAACTACAATTTTCCTTTGTCATGAAAACTGTAACGCCCATGAACTTTAGGTACAATTAAATTGTATTTTTTGGTTAATTTTTTTAATGGAGAATATTCAGTTGGACCTTGAATACATGATTTAATTTAAGTTTTGTTCAAAAGTAAGAAAAATAAGTAAATTTGGTGATATAATTATGATTAGGACATGATTGTGGTTTTATATAAGAGAAAGGGCAAAAGAAAAGAAAAGTTGAATTAGGGTTTTTCAAAGAAAAAGACACCCTTTCTTTGTCTCTTCTATGCATGCAAATCGAGGACTCTTCCCTCCTCCATCTTTTCCAACAACCCATCTTGGAGAAGCCCTCGTCGCCCTTGCTTGAAGTCATCCGGCAACCATCGTTAGCCGATGGTTGACGATGAGGAATAGTTTATTTAGGAAAAATAAACTATTCTAATTATTATTTTTGGATGGTTGCAGACGAGGCTCCACGATCGGTGCGCGTCGTCGGAGCCAAATCGCAACCATCGCCGCCACAAATCTGCATGAGCTGA

mRNA sequence

ATGAGGATGACGGATCTCCAGCGACCCGATCGATTTGTTGTTCGCTCTGCACCTTCAATACACGTAATCGAGGTGTTCTTCCACGACGATGTAGCAATCCTGCAGCACGATCAAGAAATCGAGGGCGGCGGCGGCGGTGGAGAAGAGATTCAGAGAGTGGAGGCGGATCTCCCAGTACAAGACGTAGTGACTGGGGATGGAGGAGGTGTCAGTGAAGCTTGTGTATTCGGCGAGAAGATCGTTGTAGGGCTCGAGAAGCTTCTTGGCTATGGCGATGTTCTTGTGGAGGTCTTGCTCGTTCGCCTTGTCGTTATCGATGCTCAGAACCGTGAGGAGCGATTGCAAGGAGCAACGATGAAAACTCTGGAAAGAAAAGGAGGCGTGGACGAGGCTCCACGATCGGTGCGCGTCGTCGGAGCCAAATCGCAACCATCGCCGCCACAAATCTGCATGAGCTGA

Coding sequence (CDS)

ATGAGGATGACGGATCTCCAGCGACCCGATCGATTTGTTGTTCGCTCTGCACCTTCAATACACGTAATCGAGGTGTTCTTCCACGACGATGTAGCAATCCTGCAGCACGATCAAGAAATCGAGGGCGGCGGCGGCGGTGGAGAAGAGATTCAGAGAGTGGAGGCGGATCTCCCAGTACAAGACGTAGTGACTGGGGATGGAGGAGGTGTCAGTGAAGCTTGTGTATTCGGCGAGAAGATCGTTGTAGGGCTCGAGAAGCTTCTTGGCTATGGCGATGTTCTTGTGGAGGTCTTGCTCGTTCGCCTTGTCGTTATCGATGCTCAGAACCGTGAGGAGCGATTGCAAGGAGCAACGATGAAAACTCTGGAAAGAAAAGGAGGCGTGGACGAGGCTCCACGATCGGTGCGCGTCGTCGGAGCCAAATCGCAACCATCGCCGCCACAAATCTGCATGAGCTGA

Protein sequence

MRMTDLQRPDRFVVRSAPSIHVIEVFFHDDVAILQHDQEIEGGGGGGEEIQRVEADLPVQDVVTGDGGGVSEACVFGEKIVVGLEKLLGYGDVLVEVLLVRLVVIDAQNREERLQGATMKTLERKGGVDEAPRSVRVVGAKSQPSPPQICMS

Homology

[Close]

BLAST of Tan0013870 vs. NCBI nr
Match: ONK73932.1 (uncharacterized protein A4U43_C03F1060 [Asparagus officinalis])

HSP 1 Score: 56.2 bits (134), Expect = 2.8e-04
Identity = 55/147 (37.41%), Postives = 73/147 (49.66%), Query Frame = 0


Query: 5   DLQRPDRFVVRSAPSIHVIEVFFHDDVAILQHDQEIEGGGGGGEEIQRVEADLPVQDVVT 64
           DLQ PDR V+  A  +  I+    DD A L +D+ I+G G GG        D P +DVV 
Sbjct: 19  DLQWPDRLVLPPALPVDRIKRGL-DDGAALLNDRGIDGCGRGG--------DFPEEDVVV 78

Query: 65  GDGGGVSEACVFGEKIVVGLEK-LLGYGDVLVEVLLVRLVVIDAQNREERLQGATMKTLE 124
           G GG V  A V  E+   G+E+  LG  D + EV+LVRLV ID ++       A +   E
Sbjct: 79  GGGGVVGVAGVLCEEEAEGVEEAALGGRDGVEEVILVRLVSIDTEHNV-----AAVDETE 138

Query: 125 RKGGVDEAPRSVRVVGAKSQPSPPQIC 151
             GG+ E+     V    + P P Q C
Sbjct: 139 LWGGIVESGHLKDV----ANPVPVQAC 147

[Close]

BLAST of Tan0013870 vs. ExPASy TrEMBL
Match: A0A5P1F6X6 (Uncharacterized protein OS=Asparagus officinalis OX=4686 GN=A4U43_C03F1060 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.4e-04
Identity = 55/147 (37.41%), Postives = 73/147 (49.66%), Query Frame = 0


Query: 5   DLQRPDRFVVRSAPSIHVIEVFFHDDVAILQHDQEIEGGGGGGEEIQRVEADLPVQDVVT 64
           DLQ PDR V+  A  +  I+    DD A L +D+ I+G G GG        D P +DVV 
Sbjct: 19  DLQWPDRLVLPPALPVDRIKRGL-DDGAALLNDRGIDGCGRGG--------DFPEEDVVV 78

Query: 65  GDGGGVSEACVFGEKIVVGLEK-LLGYGDVLVEVLLVRLVVIDAQNREERLQGATMKTLE 124
           G GG V  A V  E+   G+E+  LG  D + EV+LVRLV ID ++       A +   E
Sbjct: 79  GGGGVVGVAGVLCEEEAEGVEEAALGGRDGVEEVILVRLVSIDTEHNV-----AAVDETE 138

Query: 125 RKGGVDEAPRSVRVVGAKSQPSPPQIC 151
             GG+ E+     V    + P P Q C
Sbjct: 139 LWGGIVESGHLKDV----ANPVPVQAC 147

The following BLAST results are available for this feature:

BLAST of Tan0013870 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0013870 vs. NCBI nr


Match Name	E-value	Identity	Description
ONK73932.1	2.8e-04	37.41	uncharacterized protein A4U43_C03F1060 [Asparagus officinalis]	[more]

BLAST of Tan0013870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5P1F6X6	1.4e-04	37.41	Uncharacterized protein OS=Asparagus officinalis OX=4686 GN=A4U43_C03F1060 PE=4 ...	[more]

BLAST of Tan0013870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 133..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0013870.1	Tan0013870.1	mRNA