Tan0013854 (gene) Snake gourd v1

Overview


Name	Tan0013854
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Reverse transcriptase domain-containing protein
Location	LG01: 26001048 .. 26002832 (-)
RNA-Seq Expression	Tan0013854
Synteny	Tan0013854

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGAAGCTCGAGCAAAATCCGACTTTGAGTTAATGATTTATGAAGAGGAAAGCAGAGAAGAGAATTTGCTGTCAAATCTGAGAAACCTCTGATTTTTTAGACGTGTTGATATGTAGAATTTGAATAAGAAGTTTTATTAGGTATGGTTGGAAAGCTTATTTAACTTCCTATAACTTTCATGAAGAAGTCGTGAGTAGAAAATGATTAGAAGTTACTTTAAAATTCAGGTCAAGTTCAAGATACAACAGGAAAACGATTTTGGAAGTTTCAGAAACTTAGTTTGGGGGAAATAGCTTTCGAAGTAGTTACGGACACATCCTTTAGGAATTTCAATTTCGTTTCTTGAGTTAAGTTTTAGAGGGGTTCAAAAAGGAAGAGTTTGGTATAAAGTACATTATTGTTGGCCAAGTAATGAAGAAGTTATGAGTATATGAGGTAATGGTATAAAATCTGTAGAATGCTATAAAATAGATAGAATGATTTTTGCAATCCTTAGTTTGAAATTCATGAGATTGAAGTTCTAATGCTTGATTTTGGTTTGTTTGACAGGCCAAGAGGAAATAGGTCAAGTATACGAGCCCGGGATCTAGTCTTAACGCTGTGAGTGATAAAACGAACTTCGAAAACGATTTTTATGCTTGAATTTATGCTTAAGGAAATACAAGCTTCCCTAGAATGAAATAGTTTAAATACTTTATGTTTGTTTTGAACACATACTTATGAGCATACATCGTTTCCTATAAATGATATCAAATGCTCGTTGAGAGCTTAGTTTGTCCCAATGAAATTTACACGTGACCATAAGTTTATGGGTTTTCTGAAATTTAGTGGAAACGTTATAGTTTCAAGCAAGCATGTACTAGCAAATAGTTTCATGTGATTTTCTGAGACTTGAATGAATAAAATCCTGCCATATTGAGCCCGAGGCTGTATAGTACCGTGTGCACACAGGTCATTTTCTATTGTCGACATTGAGTGTACTCCGTGACAACAATGTTGTCGTGAGTGTTGGGCATGTCCCACTACGACAATAACGATGAGAGTGTTGGGCGGACCCCATTACATCGTAGAGTGAACGTGACAACAATGCTGTCTTGAGTGTTGGGTGGGCCCCACTGCGACAAAGACGATGGGAGTGTTGGGTGGGCCCCATTACATCGTAGAGTGAATGTTGGTTATATTGGGCATGCCTTACACAACGTAGAATGTCATATGTTTTTAAATGGTTAATATTCTTGATATGCCTTGCGAGATTTAAAATGACATACTTGCTAGATTTCTAAAAGAGCTATTATGATTACACGTTTATATTTAACGCTTGATTACAGATGCTTATGCTCATAGACTATTAGGTGATATCGCTTGCGAGTTAATGGTTTTAAACTTAGTCACTCACGAGCTTCATAGCTTATTCTTTCAATGTTTTCTAACTTTTCAGGTAGAGATCGAGCTCCTGGTGCCTGACATCCTGCCATTGTCTGCCGAAAGCTCTCAGAGTTTGATATTTTGTACGTGGGTGGGGTTGTATAACAAGTTCGTATATGTTGTAGATATTTTGAAAGGATTTTATAGTAATTTTCAAGATTCCACTGTGTTGTGTTTAGGGTATTTCGTGTACAAGTATAGTGTGTTTATCAGGTATAACAGAGTCAACAGGTATCGTTAGATAGGTAAACGATGTCTGTTGGCTTTATGCTATCTTTCGAGCTAAGTTAGCAGGTAGTTCGAGAGGGAGTGTGACATGTTATAAAACAATTTATAACACAAAAACTCTCTCTTGA

mRNA sequence

ATGAAGGAAGCTCGAGCAAAATCCGACTTTGAGTTAATGATTTATGAAGAGGAAAGCAGAGAAGAGAATTTGCTGCCAAGAGGAAATAGGTCAAGTATACGAGCCCGGGATCTAGTAGAGATCGAGCTCCTGGTGCCTGACATCCTGCCATTGTCTGCCGAAAGCTCTCAGAGTTTGATATTTTGTACGTGGGTGGGGTTGTATAACAAGTTCGTATATGTTGTAAACGATGTCTGTTGGCTTTATGCTATCTTTCGAGCTAAGTTAGCAGGTAGTTCGAGAGGGAGTGTGACATGTTATAAAACAATTTATAACACAAAAACTCTCTCTTGA

Coding sequence (CDS)

ATGAAGGAAGCTCGAGCAAAATCCGACTTTGAGTTAATGATTTATGAAGAGGAAAGCAGAGAAGAGAATTTGCTGCCAAGAGGAAATAGGTCAAGTATACGAGCCCGGGATCTAGTAGAGATCGAGCTCCTGGTGCCTGACATCCTGCCATTGTCTGCCGAAAGCTCTCAGAGTTTGATATTTTGTACGTGGGTGGGGTTGTATAACAAGTTCGTATATGTTGTAAACGATGTCTGTTGGCTTTATGCTATCTTTCGAGCTAAGTTAGCAGGTAGTTCGAGAGGGAGTGTGACATGTTATAAAACAATTTATAACACAAAAACTCTCTCTTGA

Protein sequence

MKEARAKSDFELMIYEEESREENLLPRGNRSSIRARDLVEIELLVPDILPLSAESSQSLIFCTWVGLYNKFVYVVNDVCWLYAIFRAKLAGSSRGSVTCYKTIYNTKTLS

Homology

[Close]

BLAST of Tan0013854 vs. NCBI nr
Match: TYK27998.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 3.3e-07
Identity = 41/85 (48.24%), Postives = 51/85 (60.00%), Query Frame = 0


Query: 24  LLPRGNRSSIRARD-LVEIELLVPDILPLSAESSQSLIFCTWVGLYNKFVYV-------- 83
           + P    S +R  D +VEIEL VPD LP SAESS+S    TW+ LY +FV+V        
Sbjct: 18  IFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSES-NSSTWLELYVEFVHVEMFWLAGI 77

Query: 84  --VNDVCWLYAIFRAKLAGSSRGSV 98
              +DVCWL+A+FRAK AG   G V
Sbjct: 78  VREDDVCWLHAVFRAKTAGGPGGGV 101

[Close]

BLAST of Tan0013854 vs. NCBI nr
Match: KAA0066851.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 3.3e-07
Identity = 41/85 (48.24%), Postives = 51/85 (60.00%), Query Frame = 0


Query: 24  LLPRGNRSSIRARD-LVEIELLVPDILPLSAESSQSLIFCTWVGLYNKFVYV-------- 83
           + P    S +R  D +VEIEL VPD LP SAESS+S    TW+ LY +FV+V        
Sbjct: 18  IFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSES-NSSTWLELYVEFVHVEMFWLAGI 77

Query: 84  --VNDVCWLYAIFRAKLAGSSRGSV 98
              +DVCWL+A+FRAK AG   G V
Sbjct: 78  VREDDVCWLHAVFRAKTAGGPGGGV 101

[Close]

BLAST of Tan0013854 vs. NCBI nr
Match: KAA0067117.1 (hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa] >TYJ97479.1 hypothetical protein E5676_scaffold598G00400 [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 8.2e-06
Identity = 48/127 (37.80%), Postives = 59/127 (46.46%), Query Frame = 0


Query: 19  SREENL-LPRGNRSSIRARDL--------------------VEIELLVPDILPLSAESSQ 78
           S  ENL +PRGNRSS++  +L                    VEIEL VPD LP SAES  
Sbjct: 87  SNLENLEMPRGNRSSLQTGELDKTVIFLLSTLSVLYDNNAVVEIELPVPDTLPTSAESFG 146

Query: 79  SLIFCTWVGLYNKFVYVV--------------------------NDVCWLYAIFRAKLAG 99
           S    TW+ LY +FV+V                           +DVCWL+ +FRAK+AG
Sbjct: 147 S-NSSTWLELYFEFVHVEMLFYKPSDVRAASYVCWEGSAGIVRGDDVCWLHTVFRAKIAG 206

[Close]

BLAST of Tan0013854 vs. NCBI nr
Match: KAA0052218.1 (uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK01785.1 uncharacterized protein E5676_scaffold113G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-05
Identity = 42/104 (40.38%), Postives = 54/104 (51.92%), Query Frame = 0


Query: 23  NLLPRGNRSSIRARDL---VEIELLVPDILPLSAESSQSLIFCTWVGLYNKFVYVV---- 82
           ++LPRGNR ++    L   VEIEL VPD LP SAESS+S    TW+ LY + V+V     
Sbjct: 76  SILPRGNRPNLHTGKLDKTVEIELPVPDTLPTSAESSKS-NSSTWLELYFESVHVEMLFY 135

Query: 83  ----------------------NDVCWLYAIFRAKLAGSSRGSV 98
                                 +D+CWL+A+F AK AGS  G V
Sbjct: 136 KPSDVRVASYVCWEGSAGIVRGDDLCWLHAVFWAKTAGSPGGGV 178

[Close]

BLAST of Tan0013854 vs. NCBI nr
Match: KAA0037581.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 58.9 bits (141), Expect = 3.1e-05
Identity = 40/88 (45.45%), Postives = 47/88 (53.41%), Query Frame = 0


Query: 38  LVEIELLVPDILPLSAESSQSLIFCTWVGLYNKFVYVV---------------------- 97
           LVEIEL VPDILP SAESS+S    TW+ LY + V+V                       
Sbjct: 146 LVEIELPVPDILPTSAESSRS-NSSTWLELYFESVHVEMFYKVILQTKRCQGCILWSAWI 205

Query: 98  ---NDVCWLYAIFRAKLAGSSRGSVTCY 101
              +DVCWL+AIFRAK AG   G VT +
Sbjct: 206 VRGDDVCWLHAIFRAKTAGGPGGGVTTW 232

[Close]

BLAST of Tan0013854 vs. ExPASy TrEMBL
Match: A0A5D3DX39 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G002140 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.6e-07
Identity = 41/85 (48.24%), Postives = 51/85 (60.00%), Query Frame = 0


Query: 24  LLPRGNRSSIRARD-LVEIELLVPDILPLSAESSQSLIFCTWVGLYNKFVYV-------- 83
           + P    S +R  D +VEIEL VPD LP SAESS+S    TW+ LY +FV+V        
Sbjct: 18  IFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSES-NSSTWLELYVEFVHVEMFWLAGI 77

Query: 84  --VNDVCWLYAIFRAKLAGSSRGSV 98
              +DVCWL+A+FRAK AG   G V
Sbjct: 78  VREDDVCWLHAVFRAKTAGGPGGGV 101

[Close]

BLAST of Tan0013854 vs. ExPASy TrEMBL
Match: A0A5A7VMG9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G002220 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.6e-07
Identity = 41/85 (48.24%), Postives = 51/85 (60.00%), Query Frame = 0


Query: 24  LLPRGNRSSIRARD-LVEIELLVPDILPLSAESSQSLIFCTWVGLYNKFVYV-------- 83
           + P    S +R  D +VEIEL VPD LP SAESS+S    TW+ LY +FV+V        
Sbjct: 18  IFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSES-NSSTWLELYVEFVHVEMFWLAGI 77

Query: 84  --VNDVCWLYAIFRAKLAGSSRGSV 98
              +DVCWL+A+FRAK AG   G V
Sbjct: 78  VREDDVCWLHAVFRAKTAGGPGGGV 101

[Close]

BLAST of Tan0013854 vs. ExPASy TrEMBL
Match: A0A5A7VIY9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold598G00400 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.0e-06
Identity = 48/127 (37.80%), Postives = 59/127 (46.46%), Query Frame = 0


Query: 19  SREENL-LPRGNRSSIRARDL--------------------VEIELLVPDILPLSAESSQ 78
           S  ENL +PRGNRSS++  +L                    VEIEL VPD LP SAES  
Sbjct: 87  SNLENLEMPRGNRSSLQTGELDKTVIFLLSTLSVLYDNNAVVEIELPVPDTLPTSAESFG 146

Query: 79  SLIFCTWVGLYNKFVYVV--------------------------NDVCWLYAIFRAKLAG 99
           S    TW+ LY +FV+V                           +DVCWL+ +FRAK+AG
Sbjct: 147 S-NSSTWLELYFEFVHVEMLFYKPSDVRAASYVCWEGSAGIVRGDDVCWLHTVFRAKIAG 206

[Close]

BLAST of Tan0013854 vs. ExPASy TrEMBL
Match: A0A5A7UAH6 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00130 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 6.8e-06
Identity = 42/104 (40.38%), Postives = 54/104 (51.92%), Query Frame = 0


Query: 23  NLLPRGNRSSIRARDL---VEIELLVPDILPLSAESSQSLIFCTWVGLYNKFVYVV---- 82
           ++LPRGNR ++    L   VEIEL VPD LP SAESS+S    TW+ LY + V+V     
Sbjct: 76  SILPRGNRPNLHTGKLDKTVEIELPVPDTLPTSAESSKS-NSSTWLELYFESVHVEMLFY 135

Query: 83  ----------------------NDVCWLYAIFRAKLAGSSRGSV 98
                                 +D+CWL+A+F AK AGS  G V
Sbjct: 136 KPSDVRVASYVCWEGSAGIVRGDDLCWLHAVFWAKTAGSPGGGV 178

[Close]

BLAST of Tan0013854 vs. ExPASy TrEMBL
Match: A0A5D3BTP3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00020 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.5e-05
Identity = 40/88 (45.45%), Postives = 47/88 (53.41%), Query Frame = 0


Query: 38  LVEIELLVPDILPLSAESSQSLIFCTWVGLYNKFVYVV---------------------- 97
           LVEIEL VPDILP SAESS+S    TW+ LY + V+V                       
Sbjct: 146 LVEIELPVPDILPTSAESSRS-NSSTWLELYFESVHVEMFYKVILQTKRCQGCILWSAWI 205

Query: 98  ---NDVCWLYAIFRAKLAGSSRGSVTCY 101
              +DVCWL+AIFRAK AG   G VT +
Sbjct: 206 VRGDDVCWLHAIFRAKTAGGPGGGVTTW 232

The following BLAST results are available for this feature:

BLAST of Tan0013854 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0013854 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK27998.1	3.3e-07	48.24	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0066851.1	3.3e-07	48.24	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0067117.1	8.2e-06	37.80	hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa] >TYJ9747...	[more]
KAA0052218.1	1.4e-05	40.38	uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK0...	[more]
KAA0037581.1	3.1e-05	45.45	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Tan0013854 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DX39	1.6e-07	48.24	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38...	[more]
A0A5A7VMG9	1.6e-07	48.24	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27...	[more]
A0A5A7VIY9	4.0e-06	37.80	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UAH6	6.8e-06	40.38	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5D3BTP3	1.5e-05	45.45	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37...	[more]

BLAST of Tan0013854 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0013854.1	Tan0013854.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:0003824	catalytic activity