Tan0013837 (gene) Snake gourd v1

Overview


Name	Tan0013837
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG05: 65512263 .. 65512556 (+)
RNA-Seq Expression	Tan0013837
Synteny	Tan0013837

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACATTCAGGTCATTCAAACAAAGGTTCTCCAACACAAAGACCAGATAACTGTTGTAGCAGCAGTTTCAGTGGTTCTGTCATTGTTTGTGTATGCAGCCCCCCGGTTTCTAAGTATTCTAGCATTCTTTTGGCCTCTCTTTCTCTCCACAGCCGTACTCTTGGTGGCAATGACTGCCTTTGGAGGTGGTTTCCAAGTTGGAACCGAAGTTCATGGTGTAAGAGCAGGTGAAAGGATCCTAGACTATGTAGGACGGCCTGAATACGCCGAATACCAATATAAGTACCAATAA

mRNA sequence

ATGGACATTCAGGTCATTCAAACAAAGGTTCTCCAACACAAAGACCAGATAACTGTTGTAGCAGCAGTTTCAGTGGTTCTGTCATTGTTTGTGTATGCAGCCCCCCGGTTTCTAAGTATTCTAGCATTCTTTTGGCCTCTCTTTCTCTCCACAGCCGTACTCTTGGTGGCAATGACTGCCTTTGGAGGTGGTTTCCAAGTTGGAACCGAAGTTCATGGTGTAAGAGCAGGTGAAAGGATCCTAGACTATGTAGGACGGCCTGAATACGCCGAATACCAATATAAGTACCAATAA

Coding sequence (CDS)

ATGGACATTCAGGTCATTCAAACAAAGGTTCTCCAACACAAAGACCAGATAACTGTTGTAGCAGCAGTTTCAGTGGTTCTGTCATTGTTTGTGTATGCAGCCCCCCGGTTTCTAAGTATTCTAGCATTCTTTTGGCCTCTCTTTCTCTCCACAGCCGTACTCTTGGTGGCAATGACTGCCTTTGGAGGTGGTTTCCAAGTTGGAACCGAAGTTCATGGTGTAAGAGCAGGTGAAAGGATCCTAGACTATGTAGGACGGCCTGAATACGCCGAATACCAATATAAGTACCAATAA

Protein sequence

MDIQVIQTKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGFQVGTEVHGVRAGERILDYVGRPEYAEYQYKYQ

Homology

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BLAST of Tan0013837 vs. NCBI nr
Match: KAG7012637.1 (hypothetical protein SDJN02_25389, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 173.7 bits (439), Expect = 7.7e-40
Identity = 94/98 (95.92%), Postives = 96/98 (97.96%), Query Frame = 0


Query: 1  MDIQVIQTKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTA 60
          MDIQVIQTKVLQHKDQ+TVVAAVSVV+SLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTA
Sbjct: 1  MDIQVIQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTA 60

Query: 61 FGGGFQVGTEVHGVRAGERILDYV-GRPEYAEYQYKYQ 98
          FGGGFQVGTEVHG RAGERILDYV GRPEYAEYQYKYQ
Sbjct: 61 FGGGFQVGTEVHGERAGERILDYVAGRPEYAEYQYKYQ 98

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BLAST of Tan0013837 vs. NCBI nr
Match: KAG6573520.1 (hypothetical protein SDJN03_27407, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 172.6 bits (436), Expect = 1.7e-39
Identity = 93/98 (94.90%), Postives = 96/98 (97.96%), Query Frame = 0


Query: 1  MDIQVIQTKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTA 60
          MDIQVIQTKVLQHKDQ+TVVAAVSVV+SLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTA
Sbjct: 1  MDIQVIQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTA 60

Query: 61 FGGGFQVGTEVHGVRAGERILDYV-GRPEYAEYQYKYQ 98
          FGGGFQVGTEVHG +AGERILDYV GRPEYAEYQYKYQ
Sbjct: 61 FGGGFQVGTEVHGEKAGERILDYVAGRPEYAEYQYKYQ 98

[Close]

BLAST of Tan0013837 vs. NCBI nr
Match: KAA0042343.1 (hypothetical protein E6C27_scaffold795G00410 [Cucumis melo var. makuwa] >TYK15467.1 hypothetical protein E5676_scaffold477G00380 [Cucumis melo var. makuwa])

HSP 1 Score: 145.2 bits (365), Expect = 2.9e-31
Identity = 79/93 (84.95%), Postives = 83/93 (89.25%), Query Frame = 0


Query: 6  IQTKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
          IQ K+LQHKDQITVVAAVSVVLSLFVY APRFLSILAFFWPLF STAVLLV MTAFGGGF
Sbjct: 3  IQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGGGF 62

Query: 66 QVGTEVHGVRAGERILDYV-GRPEYAEYQYKYQ 98
          QVG+E+HG+RAGE ILDYV GRPE  E  YKYQ
Sbjct: 63 QVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]

BLAST of Tan0013837 vs. NCBI nr
Match: KGN64996.1 (hypothetical protein Csa_022896 [Cucumis sativus])

HSP 1 Score: 144.8 bits (364), Expect = 3.8e-31
Identity = 79/93 (84.95%), Postives = 82/93 (88.17%), Query Frame = 0


Query: 6  IQTKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
          I  KVLQHKDQ+TVVAAVSVVLSLFVYAAPRFLSILAFFWPLF STAVLLV M AFGGGF
Sbjct: 3  IHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGGGF 62

Query: 66 QVGTEVHGVRAGERILDYV-GRPEYAEYQYKYQ 98
          QVGTE+HG+RAGE ILDYV GRPE  E  YKYQ
Sbjct: 63 QVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]

BLAST of Tan0013837 vs. NCBI nr
Match: KAG6583721.1 (hypothetical protein SDJN03_19653, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 106.7 bits (265), Expect = 1.2e-19
Identity = 67/95 (70.53%), Postives = 73/95 (76.84%), Query Frame = 0


Query: 6   IQTKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFLSTAVLLVAM-TAFGGG 65
           +QTKVLQ+KDQITVVAAVSVVLSLF          LAFFWPLF STA LLV M  AF GG
Sbjct: 134 VQTKVLQNKDQITVVAAVSVVLSLF----------LAFFWPLFASTAALLVGMIAAFRGG 193

Query: 66  FQVGTEVHGVR-AGERILDYV-GRPEYAEYQYKYQ 98
           FQVGT++HGVR AGE ILDYV GRPEY +  YKY+
Sbjct: 194 FQVGTKIHGVRAAGEGILDYVAGRPEYGKNHYKYR 218

[Close]

BLAST of Tan0013837 vs. ExPASy TrEMBL
Match: A0A5D3CU44 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00380 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.4e-31
Identity = 79/93 (84.95%), Postives = 83/93 (89.25%), Query Frame = 0


Query: 6  IQTKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
          IQ K+LQHKDQITVVAAVSVVLSLFVY APRFLSILAFFWPLF STAVLLV MTAFGGGF
Sbjct: 3  IQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGGGF 62

Query: 66 QVGTEVHGVRAGERILDYV-GRPEYAEYQYKYQ 98
          QVG+E+HG+RAGE ILDYV GRPE  E  YKYQ
Sbjct: 63 QVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]

BLAST of Tan0013837 vs. ExPASy TrEMBL
Match: A0A0A0LYI8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173160 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.9e-31
Identity = 79/93 (84.95%), Postives = 82/93 (88.17%), Query Frame = 0


Query: 6  IQTKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
          I  KVLQHKDQ+TVVAAVSVVLSLFVYAAPRFLSILAFFWPLF STAVLLV M AFGGGF
Sbjct: 3  IHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGGGF 62

Query: 66 QVGTEVHGVRAGERILDYV-GRPEYAEYQYKYQ 98
          QVGTE+HG+RAGE ILDYV GRPE  E  YKYQ
Sbjct: 63 QVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]

BLAST of Tan0013837 vs. ExPASy TrEMBL
Match: A0A2N9EZM9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8190 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.9e-15
Identity = 50/85 (58.82%), Postives = 66/85 (77.65%), Query Frame = 0


Query: 6  IQTKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
          I  K+LQ++  +T+ A V +VLSL +YAAPR ++ILAFFWPLF STAVLL+A+ AFGG  
Sbjct: 3  IPEKLLQYRYHLTIAAIVPLVLSLLLYAAPRLVNILAFFWPLFASTAVLLMAILAFGGLS 62

Query: 66 QVGTEVHGVRAGERILDYV-GRPEY 90
          Q  TE HG +AG+ IL+YV G+PE+
Sbjct: 63 QFSTEAHGAKAGQGILEYVGGQPEH 87

[Close]

BLAST of Tan0013837 vs. ExPASy TrEMBL
Match: A0A396J444 (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr2g0290401 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 4.1e-15
Identity = 50/97 (51.55%), Postives = 69/97 (71.13%), Query Frame = 0


Query: 2   DIQVIQTKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAF 61
           D  V+  K+L+++ QIT+   +S+V SL +Y AP FL++LA+FWPLF ST V LVA+ AF
Sbjct: 66  DTMVLSQKLLKYRYQITIAILISLVFSLLIYGAPHFLTMLAYFWPLFASTTVFLVAIIAF 125

Query: 62  GGGFQVGTEVHGVRAGERILDYV-GRPEYA-EYQYKY 97
           GG  +  TE HG +AGE +LDYV G+PE+  E QY +
Sbjct: 126 GGVSKFSTESHGEKAGEGLLDYVAGKPEHTQESQYNF 162

[Close]

BLAST of Tan0013837 vs. ExPASy TrEMBL
Match: A0A061GGG1 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_030419 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.4e-15
Identity = 46/93 (49.46%), Postives = 66/93 (70.97%), Query Frame = 0


Query: 6   IQTKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
           IQ K++Q++   T+    S +++  +Y APR L+IL +FWPLF ST V LVA+ AFGGG 
Sbjct: 92  IQQKLVQYRYHFTIAILASFIIAFLLYVAPRLLTILTYFWPLFASTTVFLVAIIAFGGGS 151

Query: 66  QVGTEVHGVRAGERILDYV-GRPEYAEYQYKYQ 98
           Q+ TEVHG +AG+ ++DYV  RPE+AE   K++
Sbjct: 152 QLATEVHGEKAGQGLMDYVAARPEHAEEAQKFE 184

[Close]

BLAST of Tan0013837 vs. TAIR 10
Match: AT4G16400.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13175.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 69.3 bits (168), Expect = 1.9e-12
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 0


Query: 6   IQTKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
           IQ K+++++    V   VSV+++  VYAAPR L+ILA+FWPLF STA  L     FGG  
Sbjct: 124 IQAKLMEYRFHFMVTIMVSVIVASLVYAAPRILNILAYFWPLFASTAAFLAMAITFGGFQ 183

Query: 66  QVGTEVHGVRAGERILDYV-GRPE 89
           Q+  E      GER++DYV GRPE
Sbjct: 184 QLSEEA----TGERLMDYVAGRPE 203

[Close]

BLAST of Tan0013837 vs. TAIR 10
Match: AT3G13175.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16400.1); Has 29 Blast hits to 29 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.7 bits (99), Expect = 1.9e-04
Identity = 33/84 (39.29%), Postives = 47/84 (55.95%), Query Frame = 0


Query: 9  KVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGFQV- 68
          K+L+ K QI     +S++    V  +P FL++L++FWPLFLSTA+ L A+  F     + 
Sbjct: 6  KLLKFKLQIVFAFVLSLLTVALVAYSPGFLTVLSYFWPLFLSTALFLAAVFFFARTSDLP 65

Query: 69 --GTEVHGVRAG-----ERILDYV 85
             T + G  AG     E ILDYV
Sbjct: 66 VSSTIIPGEGAGLKVAAEGILDYV 89

The following BLAST results are available for this feature:

BLAST of Tan0013837 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0013837 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7012637.1	7.7e-40	95.92	hypothetical protein SDJN02_25389, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6573520.1	1.7e-39	94.90	hypothetical protein SDJN03_27407, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0042343.1	2.9e-31	84.95	hypothetical protein E6C27_scaffold795G00410 [Cucumis melo var. makuwa] >TYK1546...	[more]
KGN64996.1	3.8e-31	84.95	hypothetical protein Csa_022896 [Cucumis sativus]	[more]
KAG6583721.1	1.2e-19	70.53	hypothetical protein SDJN03_19653, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Tan0013837 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CU44	1.4e-31	84.95	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LYI8	1.9e-31	84.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173160 PE=4 SV=1	[more]
A0A2N9EZM9	1.9e-15	58.82	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8190 PE=4 SV=1	[more]
A0A396J444	4.1e-15	51.55	Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr2g0290401 ...	[more]
A0A061GGG1	5.4e-15	49.46	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_030419 PE=4 SV=1	[more]

BLAST of Tan0013837 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G16400.1	1.9e-12	48.81	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G13175.1	1.9e-04	39.29	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34125	OS01G0762900 PROTEIN	coord: 6..91
None	No IPR available	PANTHER	PTHR34125:SF7	TRANSMEMBRANE PROTEIN	coord: 6..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0013837.1	Tan0013837.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane