Tan0013663 (gene) Snake gourd v1

Overview


Name	Tan0013663
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG08: 61516324 .. 61516657 (-)
RNA-Seq Expression	Tan0013663
Synteny	Tan0013663

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGACCAACCCTCAAGGATCGGTTCCAAATAAAACATCGGCATTTCCTCCCCCAATCTTAGCGTCAGCTGCACTTCAATGTCCATCCCCTCTCTCTTCTCTCTCTAACATTGATTAACATCCTGATTTTTTGTTGAATTAGGAGGAAGGGAATTGAATCAAGTAACGCACAATTTCAATCTTCAGCCATGGTTTCTGGGCTTGGATCTTCTGGCGTTTTCATCGTGCCGCTCAATCGATTAGCGCCAATCGCTTGGCTTGCGAAGCATTTTCCAGTTGCCGCGATCCCTCAGAGGCATGGCAGCAAGATCATCCGGTTAGCCTCTGATTAG

mRNA sequence

ATGTCGACCAACCCTCAAGGATCGGTTCCAAATAAAACATCGGCATTTCCTCCCCCAATCTTAGCGAGGAAGGGAATTGAATCAAGTAACGCACAATTTCAATCTTCAGCCATGGTTTCTGGGCTTGGATCTTCTGGCGTTTTCATCGTGCCGCTCAATCGATTAGCGCCAATCGCTTGGCTTGCGAAGCATTTTCCAGTTGCCGCGATCCCTCAGAGGCATGGCAGCAAGATCATCCGGTTAGCCTCTGATTAG

Coding sequence (CDS)

ATGTCGACCAACCCTCAAGGATCGGTTCCAAATAAAACATCGGCATTTCCTCCCCCAATCTTAGCGAGGAAGGGAATTGAATCAAGTAACGCACAATTTCAATCTTCAGCCATGGTTTCTGGGCTTGGATCTTCTGGCGTTTTCATCGTGCCGCTCAATCGATTAGCGCCAATCGCTTGGCTTGCGAAGCATTTTCCAGTTGCCGCGATCCCTCAGAGGCATGGCAGCAAGATCATCCGGTTAGCCTCTGATTAG

Protein sequence

MSTNPQGSVPNKTSAFPPPILARKGIESSNAQFQSSAMVSGLGSSGVFIVPLNRLAPIAWLAKHFPVAAIPQRHGSKIIRLASD

Homology

[Close]

BLAST of Tan0013663 vs. NCBI nr
Match: KAG6596233.1 (hypothetical protein SDJN03_09413, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 76.6 bits (187), Expect = 1.1e-10
Identity = 38/48 (79.17%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 23  RKGIESSNAQFQSSAMVSGLGSSGVFIVPLNRLAPIAWLAKHFPVAAI 71
           R GIESS AQFQS+AMVSGL SSGVF++PLNRLA IAWL KHFP  AI
Sbjct: 55  RNGIESSKAQFQSTAMVSGLRSSGVFVLPLNRLALIAWLVKHFPAVAI 102

[Close]

BLAST of Tan0013663 vs. NCBI nr
Match: KGN59311.1 (hypothetical protein Csa_000870 [Cucumis sativus])

HSP 1 Score: 64.7 bits (156), Expect = 4.4e-07
Identity = 43/79 (54.43%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 1  MSTNPQGSVPNKTSAFPPPILA------RKGIESSNAQFQSSAMVSGLGSSGVFIVPLNR 60
          MSTNPQGSVPNK      P L+        GIESSNAQFQ   M   L SS VF+  L+R
Sbjct: 1  MSTNPQGSVPNKNIGIFFPNLSVSWTSMMMGIESSNAQFQFPTMFFRLRSSSVFMPSLHR 60

Query: 61 LAPIAWLAKHFPVAAIPQR 74
          L  IA L  HFP AAI  R
Sbjct: 61 LLSIASLPTHFPAAAIHTR 79

[Close]

BLAST of Tan0013663 vs. ExPASy TrEMBL
Match: A0A0A0LGY9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G808890 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.1e-07
Identity = 43/79 (54.43%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 1  MSTNPQGSVPNKTSAFPPPILA------RKGIESSNAQFQSSAMVSGLGSSGVFIVPLNR 60
          MSTNPQGSVPNK      P L+        GIESSNAQFQ   M   L SS VF+  L+R
Sbjct: 1  MSTNPQGSVPNKNIGIFFPNLSVSWTSMMMGIESSNAQFQFPTMFFRLRSSSVFMPSLHR 60

Query: 61 LAPIAWLAKHFPVAAIPQR 74
          L  IA L  HFP AAI  R
Sbjct: 61 LLSIASLPTHFPAAAIHTR 79

The following BLAST results are available for this feature:

BLAST of Tan0013663 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0013663 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6596233.1	1.1e-10	79.17	hypothetical protein SDJN03_09413, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN59311.1	4.4e-07	54.43	hypothetical protein Csa_000870 [Cucumis sativus]	[more]

BLAST of Tan0013663 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGY9	2.1e-07	54.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G808890 PE=4 SV=1	[more]

BLAST of Tan0013663 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0013663.1	Tan0013663.1	mRNA