Tan0013595 (gene) Snake gourd v1

Overview


Name	Tan0013595
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG09: 67142699 .. 67143239 (-)
RNA-Seq Expression	Tan0013595
Synteny	Tan0013595

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCCACACAACTCCTCATCAAACCCATTAAATTTGAACCCTCTAAAATCAAATCCTTCACTTTTTTTTTTCTCACAAAGAGAAGAGAAAAAGGGCCCAAAAAAAAAAAAAACAGAGAGAATTGGGAAATGGGAGGATCTGAAATGTGTGTGTTCGATGGAAGCATTTCAATGCAAGACTTTTTGATCGAACGAAGGCCTTACCATCGCAACTGTGGCTGCGCATTGCACGATCGCATCAAAAATGGAGCTTGTCAACATGCTCTGAAAACCTCTGTTTCGTTTCTCAAAACCCAAAAATGGACCAAAACTTGTGTGCTGCAGATTCAGACCTCCAAATTCTCTTCTAATTTTGTTATTCACAGGTTCTCTTCCAGTTTATGTGCAGACCAAACTTCAATTTCTTCAGAGAATTAAGTTTTATGCTTTTCTTTTCTTTTCTTTTTGTTGGTTTTATTAGCATACAAAGAGATTATACTCTCTAGTTATGTGTATGAGAATGGAATTCATCTTCACGACCAAACCAAAATTTTCTTATGTGGG

mRNA sequence

CCCCACACAACTCCTCATCAAACCCATTAAATTTGAACCCTCTAAAATCAAATCCTTCACTTTTTTTTTTCTCACAAAGAGAAGAGAAAAAGGGCCCAAAAAAAAAAAAAACAGAGAGAATTGGGAAATGGGAGGATCTGAAATGTGTGTGTTCGATGGAAGCATTTCAATGCAAGACTTTTTGATCGAACGAAGGCCTTACCATCGCAACTGTGGCTGCGCATTGCACGATCGCATCAAAAATGGAGCTTGTCAACATGCTCTGAAAACCTCTGTTTCGTTTCTCAAAACCCAAAAATGGACCAAAACTTGTGTGCTGCAGATTCAGACCTCCAAATTCTCTTCTAATTTTGTTATTCACAGGTTCTCTTCCAGTTTATGTGCAGACCAAACTTCAATTTCTTCAGAGAATTAAGTTTTATGCTTTTCTTTTCTTTTCTTTTTGTTGGTTTTATTAGCATACAAAGAGATTATACTCTCTAGTTATGTGTATGAGAATGGAATTCATCTTCACGACCAAACCAAAATTTTCTTATGTGGG

Coding sequence (CDS)

ATGGGAGGATCTGAAATGTGTGTGTTCGATGGAAGCATTTCAATGCAAGACTTTTTGATCGAACGAAGGCCTTACCATCGCAACTGTGGCTGCGCATTGCACGATCGCATCAAAAATGGAGCTTGTCAACATGCTCTGAAAACCTCTGTTTCGTTTCTCAAAACCCAAAAATGGACCAAAACTTGTGTGCTGCAGATTCAGACCTCCAAATTCTCTTCTAATTTTGTTATTCACAGGTTCTCTTCCAGTTTATGTGCAGACCAAACTTCAATTTCTTCAGAGAATTAA

Protein sequence

MGGSEMCVFDGSISMQDFLIERRPYHRNCGCALHDRIKNGACQHALKTSVSFLKTQKWTKTCVLQIQTSKFSSNFVIHRFSSSLCADQTSISSEN

Homology

[Close]

BLAST of Tan0013595 vs. NCBI nr
Match: KAG6587851.1 (hypothetical protein SDJN03_16416, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 134.0 bits (336), Expect = 6.6e-28
Identity = 68/102 (66.67%), Postives = 79/102 (77.45%), Query Frame = 0


Query: 1   MGGSEM--CVFDGSISMQDFLIERRPYHRNCGCALHDRIKNGACQHALKTSVSFLKTQKW 60
           MGG  M  CVFDGSISM+DFLIERRPYHRNCGCALH R+KNG C HAL +SVSFLK +KW
Sbjct: 1   MGGEMMGGCVFDGSISMRDFLIERRPYHRNCGCALHHRLKNGGCPHALNSSVSFLKARKW 60

Query: 61  TKTCVLQIQT-SKFSSN----FVIHRFSSSLCADQTSISSEN 96
           T TC LQIQ  S+FS++     ++H  SS +CAD+ SI SEN
Sbjct: 61  TDTCRLQIQAMSEFSAHAAPTSLLHDLSSGICADEVSICSEN 102

[Close]

BLAST of Tan0013595 vs. NCBI nr
Match: XP_023531633.1 (uncharacterized protein LOC111793815 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 120.2 bits (300), Expect = 9.9e-24
Identity = 62/94 (65.96%), Postives = 68/94 (72.34%), Query Frame = 0


Query: 1  MGGSEM--CVFDGSISMQDFLIERRPYHRNCGCALHDRIKNGACQHALKTSVSFLKTQKW 60
          MGG  M  CVFDGSISM DFLIERRPYHRNCGCALH R KNG C HAL TSVSFLK +KW
Sbjct: 1  MGGEVMGGCVFDGSISMHDFLIERRPYHRNCGCALHHRAKNGGCPHALNTSVSFLKARKW 60

Query: 61 TKTCVLQIQT-SKFSSN----FVIHRFSSSLCAD 88
          T TC LQIQ  S+FS++     ++H  SS    D
Sbjct: 61 TDTCRLQIQAMSEFSAHAAPTSLLHHLSSGFLCD 94

[Close]

BLAST of Tan0013595 vs. NCBI nr
Match: XP_023531631.1 (uncharacterized protein LOC111793815 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 118.6 bits (296), Expect = 2.9e-23
Identity = 61/89 (68.54%), Postives = 67/89 (75.28%), Query Frame = 0


Query: 1  MGGSEM--CVFDGSISMQDFLIERRPYHRNCGCALHDRIKNGACQHALKTSVSFLKTQKW 60
          MGG  M  CVFDGSISM DFLIERRPYHRNCGCALH R KNG C HAL TSVSFLK +KW
Sbjct: 1  MGGEVMGGCVFDGSISMHDFLIERRPYHRNCGCALHHRAKNGGCPHALNTSVSFLKARKW 60

Query: 61 TKTCVLQIQT-SKFSSN----FVIHRFSS 83
          T TC LQIQ  S+FS++     ++H  SS
Sbjct: 61 TDTCRLQIQAMSEFSAHAAPTSLLHHLSS 89

[Close]

BLAST of Tan0013595 vs. NCBI nr
Match: KGN65216.1 (hypothetical protein Csa_019753 [Cucumis sativus])

HSP 1 Score: 92.4 bits (228), Expect = 2.2e-15
Identity = 56/80 (70.00%), Postives = 60/80 (75.00%), Query Frame = 0


Query: 1  MGGSEMCVFDGSISMQDFLIERRPYHRNCGCALH-DRIKNG-ACQHALKT--SVSFLKTQ 60
          MGG    VFDGS+S+Q FLIERRPYHRNCGCALH DRI+NG AC HALK+  SVSFLKTQ
Sbjct: 4  MGGVGSRVFDGSLSLQSFLIERRPYHRNCGCALHDDRIRNGAACSHALKSKNSVSFLKTQ 63

Query: 61 KWTKTCVLQIQTSKFSSNFV 77
          K  KT  LQI  S  S  FV
Sbjct: 64 KCPKTS-LQILPSS-SRQFV 81

[Close]

BLAST of Tan0013595 vs. NCBI nr
Match: KAA0050036.1 (hypothetical protein E6C27_scaffold675G00110 [Cucumis melo var. makuwa] >TYK03640.1 hypothetical protein E5676_scaffold1369G00690 [Cucumis melo var. makuwa])

HSP 1 Score: 92.0 bits (227), Expect = 2.9e-15
Identity = 60/93 (64.52%), Postives = 65/93 (69.89%), Query Frame = 0


Query: 7   CVFDGSISMQDFLIERRPYHRNCGCALH-DRIKNG-ACQHA--LKTSVSFLKTQKWTKTC 66
           CVFDGS+SMQDFLIERRPYHRNCGCALH DR +NG AC HA  LK SVSFLKTQK   T 
Sbjct: 68  CVFDGSLSMQDFLIERRPYHRNCGCALHDDRFRNGAACSHAMKLKNSVSFLKTQKCPITS 127

Query: 67  VLQI--QTSKFSSNFVIHRFSSSLCADQTSISS 94
            LQI   +SK SS   ++  S S    Q S SS
Sbjct: 128 -LQILRSSSKVSSRQFVNSESPSF-VSQFSTSS 158

[Close]

BLAST of Tan0013595 vs. ExPASy TrEMBL
Match: A0A0A0LZ02 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G265640 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.1e-15
Identity = 56/80 (70.00%), Postives = 60/80 (75.00%), Query Frame = 0


Query: 1  MGGSEMCVFDGSISMQDFLIERRPYHRNCGCALH-DRIKNG-ACQHALKT--SVSFLKTQ 60
          MGG    VFDGS+S+Q FLIERRPYHRNCGCALH DRI+NG AC HALK+  SVSFLKTQ
Sbjct: 4  MGGVGSRVFDGSLSLQSFLIERRPYHRNCGCALHDDRIRNGAACSHALKSKNSVSFLKTQ 63

Query: 61 KWTKTCVLQIQTSKFSSNFV 77
          K  KT  LQI  S  S  FV
Sbjct: 64 KCPKTS-LQILPSS-SRQFV 81

[Close]

BLAST of Tan0013595 vs. ExPASy TrEMBL
Match: A0A5A7U781 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00690 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.4e-15
Identity = 60/93 (64.52%), Postives = 65/93 (69.89%), Query Frame = 0


Query: 7   CVFDGSISMQDFLIERRPYHRNCGCALH-DRIKNG-ACQHA--LKTSVSFLKTQKWTKTC 66
           CVFDGS+SMQDFLIERRPYHRNCGCALH DR +NG AC HA  LK SVSFLKTQK   T 
Sbjct: 68  CVFDGSLSMQDFLIERRPYHRNCGCALHDDRFRNGAACSHAMKLKNSVSFLKTQKCPITS 127

Query: 67  VLQI--QTSKFSSNFVIHRFSSSLCADQTSISS 94
            LQI   +SK SS   ++  S S    Q S SS
Sbjct: 128 -LQILRSSSKVSSRQFVNSESPSF-VSQFSTSS 158

[Close]

BLAST of Tan0013595 vs. ExPASy TrEMBL
Match: M5VW71 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G254200 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.2e-12
Identity = 39/73 (53.42%), Postives = 51/73 (69.86%), Query Frame = 0


Query: 7  CVFDGSISMQDFLIERRPYHRNCGCALHDRIKNGACQHALKTSVSFLKTQKWT--KTCVL 66
          CVF+GS+SM+D  IERRPYH+NC CALH + K GAC +A + ++SF K Q WT    C+ 
Sbjct: 13 CVFEGSLSMRDTEIERRPYHKNCSCALH-KSKGGACSNACQRNISFPKKQSWTDGSLCMQ 72

Query: 67 QIQTSKFSSNFVI 78
             +SKFSS  V+
Sbjct: 73 AAVSSKFSSPLVV 84

[Close]

BLAST of Tan0013595 vs. ExPASy TrEMBL
Match: V7CAB1 (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_003G175000g PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.6e-11
Identity = 41/69 (59.42%), Postives = 47/69 (68.12%), Query Frame = 0


Query: 7  CVFDGSISMQDFLIERRPYHRNCGCALHDRIKNGACQHAL--KTSVSFLKTQKWTKTCVL 66
          CVF+GSIS+ D  IERRPYH+NCGCALH+   NG C  A   KT VSF K   WT+ C +
Sbjct: 12 CVFEGSISLHDMEIERRPYHKNCGCALHN--LNGICSKACPQKTCVSFTKETSWTE-CSM 71

Query: 67 QIQTSKFSS 74
             TSKFSS
Sbjct: 72 YTTTSKFSS 77

[Close]

BLAST of Tan0013595 vs. ExPASy TrEMBL
Match: A0A498HZI5 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_029044 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.1e-11
Identity = 39/72 (54.17%), Postives = 48/72 (66.67%), Query Frame = 0


Query: 7  CVFDGSISMQDFLIERRPYHRNCGCALHDRIKNGACQHALKTSVSFLKTQKWTK--TCVL 66
          CVF+GS+SMQD  IERRPYH+NC CALH   K G C +A + ++SF K Q W+    C+ 
Sbjct: 13 CVFEGSLSMQDTEIERRPYHKNCSCALHS--KAGVCSNACQRNISFPKKQSWSDRFLCMQ 72

Query: 67 QIQTSKFSSNFV 77
             TSKFSS  V
Sbjct: 73 ASATSKFSSPLV 82

[Close]

BLAST of Tan0013595 vs. TAIR 10
Match: AT5G35110.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46490.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 61.6 bits (148), Expect = 3.9e-10
Identity = 33/87 (37.93%), Postives = 47/87 (54.02%), Query Frame = 0


Query: 1  MGGSEMCVFDGSISMQDFLIERRPYHRNCGCALHDRIKNGA----CQHALKTSVSFLKTQ 60
          M G    +F+G IS  D  I+RRPYH+NCGCALH+R + G     C+H     V F   +
Sbjct: 6  MDGIFRNIFEGCISSCDSSIQRRPYHKNCGCALHERSRGGGSATPCRHGRSEVVMFPIQR 65

Query: 61 KWTKTCVLQIQTSKFSSNFVIHRFSSS 84
           W++   L +  +  SS+  +   SSS
Sbjct: 66 SWSEGNSLALHLASSSSSSNLQSLSSS 92

[Close]

BLAST of Tan0013595 vs. TAIR 10
Match: AT2G46490.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35110.1); Has 34 Blast hits to 34 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 55.5 bits (132), Expect = 2.8e-08
Identity = 34/91 (37.36%), Postives = 48/91 (52.75%), Query Frame = 0


Query: 8   VFDGSISMQDFLIERRPYHRNCGCALHDRIKNG----------AC-QHALKTSVSFLKTQ 67
           +F+G IS  D  IERRPYH+NCGCALHD+              +C +H    S+SF   +
Sbjct: 10  IFEGCISGLDSAIERRPYHKNCGCALHDKSSGAGKNQNQRRPPSCRRHGSSESISFPIRR 69

Query: 68  KWTKTCVLQI---QTSKFSSNFVIHRFSSSL 85
            W++  ++ +    +S  SSN      SSSL
Sbjct: 70  SWSEGNIMAMNLFSSSSSSSNLQSLSSSSSL 100

The following BLAST results are available for this feature:

BLAST of Tan0013595 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0013595 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6587851.1	6.6e-28	66.67	hypothetical protein SDJN03_16416, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023531633.1	9.9e-24	65.96	uncharacterized protein LOC111793815 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023531631.1	2.9e-23	68.54	uncharacterized protein LOC111793815 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
KGN65216.1	2.2e-15	70.00	hypothetical protein Csa_019753 [Cucumis sativus]	[more]
KAA0050036.1	2.9e-15	64.52	hypothetical protein E6C27_scaffold675G00110 [Cucumis melo var. makuwa] >TYK0364...	[more]

BLAST of Tan0013595 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LZ02	1.1e-15	70.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G265640 PE=4 SV=1	[more]
A0A5A7U781	1.4e-15	64.52	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
M5VW71	3.2e-12	53.42	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G254200 PE=4 SV=1	[more]
V7CAB1	1.6e-11	59.42	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_003G175000g PE=4 ...	[more]
A0A498HZI5	2.1e-11	54.17	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_029044 PE=4 SV=1	[more]

BLAST of Tan0013595 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G35110.1	3.9e-10	37.93	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G46490.1	2.8e-08	37.36	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35121:SF8	SUBFAMILY NOT NAMED	coord: 5..78
None	No IPR available	PANTHER	PTHR35121	HOMEODOMAIN PROTEIN 8, PUTATIVE-RELATED	coord: 5..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0013595.1	Tan0013595.1	mRNA