Tan0013586 (gene) Snake gourd v1

Overview


Name	Tan0013586
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG10: 40481924 .. 40483264 (+)
RNA-Seq Expression	Tan0013586
Synteny	Tan0013586

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAAGATCCCAGAGAAATTCAAAACTTTTGTAGAAAAAAAAAAATGGAGGATTCAACTGAAAAGAGCAAGAAGCTTTATGATGAAACTGATCATCGTGAACTTCTTCATTCTCACTCTCCTTTCTGTTTACCCATCTGTGATTCCATCCTTCAACCTCTCATCGCTATTTTGAGGTTCTTAGGTTTTAATGGCGATGGAGCTTGTTGTCTAACTCCGTCCTCACCGGAAGATTCCTACACCGGCGGCTCAGCTCCGCCTTCCACGGCGGTCGACCCACCATATGACGACTTTGTAAGCCTCTCTCCTTTTTAGGTTCTAATTTTTTTTAATAATTTTTTATTTTGGTACTTATTTTTTTAAAAATGTTTTCTTGAAAAAAAAATAATAAATAAATAACAACGATTATCTATCCATGTTTCTAAAAAGTAAAATATGAAAGAAGGTATTTTCGTTGAGATGACTCATTTTTTAGCCCTTTAATAACTGATAACTTATATTTTGATTATAACGAAATGTGTACAAAATTATCTATGTGAGCATGAAGCGATCTTCATTATTTACGCTCTCATACGCAAAAATATCATCATTCTCAGTCTTGCTTAAATGAGTTATCCAAAATCTAATAAAAAAAAAGACAAGGAAGAATTAAGCCATAGAAAGCAATAGCAATAAAGCTAGAACTAGAGCGAGAATAAAAAGAGCTAGAGCAATGGCGAGTCCATGATTTTTATTGAGGGGCTTAAATATAAAATTCAAAAAAATATTTAAGATTGTAAGAAGTAGAGCTTAAACCTAGGTCTTGATGGGAAGTTAGAGACATATTAACTAGTAAGTTAGAAGACTTCTTTTGTATTTTTATTTGATTTTTCCTATACATATTATATAAAGTAAAAATTTTTAGGGCGCTCGGGCCTTAACTAAATCCGCCTCTAAGAGCAGCATGAGACAAGCAATAGAGCGAGAGAGGGAGCAAAAACTGGAACTAGGACGAGAGTGAGAATTGGAACTAGAACTTGAGCGAGAGAGCGATTTTCCGTGTCTTTTTCTTTTTTCTAGAATTTCGATCACTCATTACTATCATGAGTGAAAATATGAGAGTTAGAGCTAGAGCAAAATATCCTCGCATTAATTTGAACATAACACTACAGAAAATGTGACATTAAAACGTGTAAAAATAAGTCTTTCGTACAAATTTCTTGTGGAACAATTTTCTTTTTTCGTTATTTAAAAAGAAAAAAGAATTATATATTTGGATGTAGGAGCAGGAAAGTGAGTACTACAGGCGACATGTTCCTCCTCGGCCGCCGTGGAGCACCGGCGGCGGTGGTCAGACCGACTAA

mRNA sequence

CGAAGATCCCAGAGAAATTCAAAACTTTTGTAGAAAAAAAAAAATGGAGGATTCAACTGAAAAGAGCAAGAAGCTTTATGATGAAACTGATCATCGTGAACTTCTTCATTCTCACTCTCCTTTCTGTTTACCCATCTGTGATTCCATCCTTCAACCTCTCATCGCTATTTTGAGGTTCTTAGGTTTTAATGGCGATGGAGCTTGTTGTCTAACTCCGTCCTCACCGGAAGATTCCTACACCGGCGGCTCAGCTCCGCCTTCCACGGCGGTCGACCCACCATATGACGACTTTGAGCAGGAAAGTGAGTACTACAGGCGACATGTTCCTCCTCGGCCGCCGTGGAGCACCGGCGGCGGTGGTCAGACCGACTAA

Coding sequence (CDS)

ATGGAGGATTCAACTGAAAAGAGCAAGAAGCTTTATGATGAAACTGATCATCGTGAACTTCTTCATTCTCACTCTCCTTTCTGTTTACCCATCTGTGATTCCATCCTTCAACCTCTCATCGCTATTTTGAGGTTCTTAGGTTTTAATGGCGATGGAGCTTGTTGTCTAACTCCGTCCTCACCGGAAGATTCCTACACCGGCGGCTCAGCTCCGCCTTCCACGGCGGTCGACCCACCATATGACGACTTTGAGCAGGAAAGTGAGTACTACAGGCGACATGTTCCTCCTCGGCCGCCGTGGAGCACCGGCGGCGGTGGTCAGACCGACTAA

Protein sequence

MEDSTEKSKKLYDETDHRELLHSHSPFCLPICDSILQPLIAILRFLGFNGDGACCLTPSSPEDSYTGGSAPPSTAVDPPYDDFEQESEYYRRHVPPRPPWSTGGGGQTD

Homology

[Close]

BLAST of Tan0013586 vs. NCBI nr
Match: XP_038886557.1 (uncharacterized protein LOC120076731 [Benincasa hispida])

HSP 1 Score: 140.2 bits (352), Expect = 1.1e-29
Identity = 75/108 (69.44%), Postives = 81/108 (75.00%), Query Frame = 0


Query: 3   DSTEKSKKLYDETDHRELLHSHSPFCLPICDSILQPLIAILRFLGFNGDGACCL-TPSSP 62
           DS EKSKK  D+ D  + LHSH P  L ICDSILQ  IAILRFLGFN +G      PSSP
Sbjct: 2   DSIEKSKKQVDDDDETD-LHSHCPIFLIICDSILQAFIAILRFLGFNHNGPPYRPAPSSP 61

Query: 63  EDSYTGGSAPPSTAVDPPYDDFEQESEYYRRHVPPRPPWSTGGGGQTD 110
           ED YT GS PPSTAV+PP D+ E+ESEYYR HVPP PPWSTGGGGQTD
Sbjct: 62  EDCYTDGSDPPSTAVNPPDDESEEESEYYRPHVPPPPPWSTGGGGQTD 108

[Close]

BLAST of Tan0013586 vs. NCBI nr
Match: XP_004138360.2 (uncharacterized protein LOC101208454 [Cucumis sativus] >KAE8646592.1 hypothetical protein Csa_005099 [Cucumis sativus])

HSP 1 Score: 122.9 bits (307), Expect = 1.8e-24
Identity = 70/112 (62.50%), Postives = 76/112 (67.86%), Query Frame = 0


Query: 1   MEDSTEKSKKLYDETDHRELLH--SHSPFCLPICDSILQPLIAILRFLGFNGDGACCLTP 60
           M+ STEKSKK   + D+   LH   H    L I DSILQP I+ILRF GF  D       
Sbjct: 30  MKGSTEKSKK---QDDNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPA 89

Query: 61  SSP-EDSYTGGSAPPSTAVDPPYDDFEQESEYYRRHVPPRPPWSTGGGGQTD 110
           SS  ED YT GS PPSTAVDPP+DD E+ESEYYR HVPPRPPWSTGGGGQ D
Sbjct: 90  SSSLEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPRPPWSTGGGGQID 138

[Close]

BLAST of Tan0013586 vs. NCBI nr
Match: XP_008464348.1 (PREDICTED: uncharacterized protein LOC103502256 [Cucumis melo])

HSP 1 Score: 117.1 bits (292), Expect = 9.6e-23
Identity = 68/110 (61.82%), Postives = 74/110 (67.27%), Query Frame = 0


Query: 1   MEDSTEKSKKLYDETDHRELLH--SHSPFCLPICDSILQPLIAILRFLGFNGDGACCLTP 60
           M+DSTEKSKK   + D+   LH   H    L I DSILQ  IAILRF GF  +       
Sbjct: 40  MKDSTEKSKK---QADNESDLHPIPHCSIILTIFDSILQAFIAILRFFGFKRNAPPYRPA 99

Query: 61  SSP-EDSYTGGSAPPSTAVDPPYDDFEQESEYYRRHVPPRPPWSTGGGGQ 108
           SS  ED YT GS PPSTAVDPP+DD E+ESEYYR HVPP PPWSTGGGGQ
Sbjct: 100 SSSLEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPPPPWSTGGGGQ 146

[Close]

BLAST of Tan0013586 vs. NCBI nr
Match: KAA0039201.1 (uncharacterized protein E6C27_scaffold121G001180 [Cucumis melo var. makuwa] >TYK18468.1 uncharacterized protein E5676_scaffold607G00380 [Cucumis melo var. makuwa])

HSP 1 Score: 117.1 bits (292), Expect = 9.6e-23
Identity = 68/110 (61.82%), Postives = 74/110 (67.27%), Query Frame = 0


Query: 1   MEDSTEKSKKLYDETDHRELLH--SHSPFCLPICDSILQPLIAILRFLGFNGDGACCLTP 60
           M+DSTEKSKK   + D+   LH   H    L I DSILQ  IAILRF GF  +       
Sbjct: 1   MKDSTEKSKK---QADNESDLHPIPHCSIILTIFDSILQAFIAILRFFGFKRNAPPYRPA 60

Query: 61  SSP-EDSYTGGSAPPSTAVDPPYDDFEQESEYYRRHVPPRPPWSTGGGGQ 108
           SS  ED YT GS PPSTAVDPP+DD E+ESEYYR HVPP PPWSTGGGGQ
Sbjct: 61  SSSLEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPPPPWSTGGGGQ 107

[Close]

BLAST of Tan0013586 vs. NCBI nr
Match: KAG7024354.1 (hypothetical protein SDJN02_13168 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 80.9 bits (198), Expect = 7.6e-12
Identity = 50/109 (45.87%), Postives = 57/109 (52.29%), Query Frame = 0


Query: 1   MEDSTEKSKKLYDETDHRELLHSHSPFCLPICDSILQPLIAILRFLGFNGDGACCLTPSS 60
           ME+ST K+ KL DE D    +HSHS     +CD IL   IAIL + GFN  G    TP  
Sbjct: 1   MENSTTKTNKLTDEPD----VHSHS----TLCDCILHFFIAILSYFGFNHRGRYRPTPDE 60

Query: 61  PEDSYTGGSAPPSTAVDPPYDDFEQESEYYRRHVPPRPPWSTGGGGQTD 110
           P                      E+ESEY+R H PP PPWSTGGGGQTD
Sbjct: 61  P----------------------EEESEYFRGHAPPPPPWSTGGGGQTD 79

[Close]

BLAST of Tan0013586 vs. ExPASy TrEMBL
Match: A0A0A0KBZ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020160 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 8.5e-25
Identity = 70/112 (62.50%), Postives = 76/112 (67.86%), Query Frame = 0


Query: 1   MEDSTEKSKKLYDETDHRELLH--SHSPFCLPICDSILQPLIAILRFLGFNGDGACCLTP 60
           M+ STEKSKK   + D+   LH   H    L I DSILQP I+ILRF GF  D       
Sbjct: 1   MKGSTEKSKK---QDDNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPA 60

Query: 61  SSP-EDSYTGGSAPPSTAVDPPYDDFEQESEYYRRHVPPRPPWSTGGGGQTD 110
           SS  ED YT GS PPSTAVDPP+DD E+ESEYYR HVPPRPPWSTGGGGQ D
Sbjct: 61  SSSLEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPRPPWSTGGGGQID 109

[Close]

BLAST of Tan0013586 vs. ExPASy TrEMBL
Match: A0A5D3D4J4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold607G00380 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 4.7e-23
Identity = 68/110 (61.82%), Postives = 74/110 (67.27%), Query Frame = 0


Query: 1   MEDSTEKSKKLYDETDHRELLH--SHSPFCLPICDSILQPLIAILRFLGFNGDGACCLTP 60
           M+DSTEKSKK   + D+   LH   H    L I DSILQ  IAILRF GF  +       
Sbjct: 1   MKDSTEKSKK---QADNESDLHPIPHCSIILTIFDSILQAFIAILRFFGFKRNAPPYRPA 60

Query: 61  SSP-EDSYTGGSAPPSTAVDPPYDDFEQESEYYRRHVPPRPPWSTGGGGQ 108
           SS  ED YT GS PPSTAVDPP+DD E+ESEYYR HVPP PPWSTGGGGQ
Sbjct: 61  SSSLEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPPPPWSTGGGGQ 107

[Close]

BLAST of Tan0013586 vs. ExPASy TrEMBL
Match: A0A1S3CLD8 (uncharacterized protein LOC103502256 OS=Cucumis melo OX=3656 GN=LOC103502256 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 4.7e-23
Identity = 68/110 (61.82%), Postives = 74/110 (67.27%), Query Frame = 0


Query: 1   MEDSTEKSKKLYDETDHRELLH--SHSPFCLPICDSILQPLIAILRFLGFNGDGACCLTP 60
           M+DSTEKSKK   + D+   LH   H    L I DSILQ  IAILRF GF  +       
Sbjct: 40  MKDSTEKSKK---QADNESDLHPIPHCSIILTIFDSILQAFIAILRFFGFKRNAPPYRPA 99

Query: 61  SSP-EDSYTGGSAPPSTAVDPPYDDFEQESEYYRRHVPPRPPWSTGGGGQ 108
           SS  ED YT GS PPSTAVDPP+DD E+ESEYYR HVPP PPWSTGGGGQ
Sbjct: 100 SSSLEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPPPPWSTGGGGQ 146

[Close]

BLAST of Tan0013586 vs. ExPASy TrEMBL
Match: A0A5A7T6U0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold607G00390 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.8e-11
Identity = 49/110 (44.55%), Postives = 65/110 (59.09%), Query Frame = 0


Query: 1   MEDSTEKSKKLYDETDHRELLHSHSPFCLPICDSILQPLIAILRFLGFNGDGACCLTPSS 60
           +E+S E +K+L D     +++H H PF L I + + Q  +A  RFLGF          SS
Sbjct: 14  IENSNENTKELND-----DVVHDHCPFFLSIFNLVFQITMAFYRFLGFRVHRPIL---SS 73

Query: 61  PEDSYTGGSAPPSTAVDPPYDD-FEQESEYYRRHVPPRPPWSTGGGGQTD 110
            EDSY   S PP T VDPP +D  E+E E+ RR+ PP PP S GGGG+T+
Sbjct: 74  SEDSYPVDSQPPPTTVDPPIEDPGEEEREFARRNPPPPPPPSNGGGGRTN 115

[Close]

BLAST of Tan0013586 vs. ExPASy TrEMBL
Match: A0A1S3CMT1 (uncharacterized protein LOC103502255 OS=Cucumis melo OX=3656 GN=LOC103502255 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.8e-11
Identity = 49/110 (44.55%), Postives = 65/110 (59.09%), Query Frame = 0


Query: 1   MEDSTEKSKKLYDETDHRELLHSHSPFCLPICDSILQPLIAILRFLGFNGDGACCLTPSS 60
           +E+S E +K+L D     +++H H PF L I + + Q  +A  RFLGF          SS
Sbjct: 14  IENSNENTKELND-----DVVHDHCPFFLSIFNLVFQITMAFYRFLGFRVHRPIL---SS 73

Query: 61  PEDSYTGGSAPPSTAVDPPYDD-FEQESEYYRRHVPPRPPWSTGGGGQTD 110
            EDSY   S PP T VDPP +D  E+E E+ RR+ PP PP S GGGG+T+
Sbjct: 74  SEDSYPVDSQPPPTTVDPPIEDPGEEEREFARRNPPPPPPPSNGGGGRTN 115

The following BLAST results are available for this feature:

BLAST of Tan0013586 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0013586 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038886557.1	1.1e-29	69.44	uncharacterized protein LOC120076731 [Benincasa hispida]	[more]
XP_004138360.2	1.8e-24	62.50	uncharacterized protein LOC101208454 [Cucumis sativus] >KAE8646592.1 hypothetica...	[more]
XP_008464348.1	9.6e-23	61.82	PREDICTED: uncharacterized protein LOC103502256 [Cucumis melo]	[more]
KAA0039201.1	9.6e-23	61.82	uncharacterized protein E6C27_scaffold121G001180 [Cucumis melo var. makuwa] >TYK...	[more]
KAG7024354.1	7.6e-12	45.87	hypothetical protein SDJN02_13168 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Tan0013586 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBZ4	8.5e-25	62.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020160 PE=4 SV=1	[more]
A0A5D3D4J4	4.7e-23	61.82	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CLD8	4.7e-23	61.82	uncharacterized protein LOC103502256 OS=Cucumis melo OX=3656 GN=LOC103502256 PE=...	[more]
A0A5A7T6U0	1.8e-11	44.55	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CMT1	1.8e-11	44.55	uncharacterized protein LOC103502255 OS=Cucumis melo OX=3656 GN=LOC103502255 PE=...	[more]

BLAST of Tan0013586 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0013586.1	Tan0013586.1	mRNA