Tan0013424 (gene) Snake gourd v1

Overview


Name	Tan0013424
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG11: 22671697 .. 22672342 (-)
RNA-Seq Expression	Tan0013424
Synteny	Tan0013424

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTAGATGAGCCATGCCCATAGGGTTTAAGTCTAAAAAAGAGTTCGTCCCTGTTGGATTTGATTCTGCTAAATTAGCAAGTTTGATCAAGAAGGGAGCTAATGCTTTTAGTACGGTAGCCAAGCTCAAGGTTTCCAACTTCCCTGCATTAATTCTTATGATTGGTTTTTGGGAGACACCTATATCTTTTTCTTCGAGTTTTCTGGGCGATTCATGTCATCCTCTTGATATTAGTCGAGATGTATCTTTTTCCTTCTGGTTAATTGCAAGTTTGGAACTGAATTGTTAATTTTGGTTTTGATTTTCTTTTGTTTTTTATGATGTTAAGAATGTTTTGTTGACTGGCAGTATAAGTCAACATACGAGGGGGATTTAGTGGTCGAGTGTTACTTTGGAAAGCAAAAGTTTGTTTGGAAGCTTCTAGATGGGAATCTTAAGAACAAGATAGACATTCAATCGTCGGATATCGTCTCCCTCAAGTCGACTTACAACAAGGATGGTCTCGGGATGTTGGATATAGTGGTGAGTTACATTTTTTTGTTGCCATTGTTTTCTTGATCAAGTTGTGGAACTTGAACTTGAACTTGAACCTTGTTCTTCATATGTTTTACTGTTCTGTTTTCACTCTTTTGTAGCTAGCGAGATAG

mRNA sequence

CCTAGATGAGCCATGCCCATAGGGTTTAAGTCTAAAAAAGAGTTCGTCCCTGTTGGATTTGATTCTGCTAAATTAGCAAGTTTGATCAAGAAGGGAGCTAATGCTTTTAGTACGGTAGCCAAGCTCAAGGTTTCCAACTTCCCTGCATTAATTCTTATGATTGGTTTTTGGGAGACACCTATATCTTTTTCTTCGAGTTTTCTGGGCGATTCATGTCATCCTCTTGATATTAGTCGAGATTATAAGTCAACATACGAGGGGGATTTAGTGGTCGAGTGTTACTTTGGAAAGCAAAAGTTTGTTTGGAAGCTTCTAGATGGGAATCTTAAGAACAAGATAGACATTCAATCGTCGGATATCGTCTCCCTCAAGTCGACTTACAACAAGGATGGTCTCGGGATGTTGGATATAGTGCTAGCGAGATAG

Coding sequence (CDS)

ATGCCCATAGGGTTTAAGTCTAAAAAAGAGTTCGTCCCTGTTGGATTTGATTCTGCTAAATTAGCAAGTTTGATCAAGAAGGGAGCTAATGCTTTTAGTACGGTAGCCAAGCTCAAGGTTTCCAACTTCCCTGCATTAATTCTTATGATTGGTTTTTGGGAGACACCTATATCTTTTTCTTCGAGTTTTCTGGGCGATTCATGTCATCCTCTTGATATTAGTCGAGATTATAAGTCAACATACGAGGGGGATTTAGTGGTCGAGTGTTACTTTGGAAAGCAAAAGTTTGTTTGGAAGCTTCTAGATGGGAATCTTAAGAACAAGATAGACATTCAATCGTCGGATATCGTCTCCCTCAAGTCGACTTACAACAAGGATGGTCTCGGGATGTTGGATATAGTGCTAGCGAGATAG

Protein sequence

MPIGFKSKKEFVPVGFDSAKLASLIKKGANAFSTVAKLKVSNFPALILMIGFWETPISFSSSFLGDSCHPLDISRDYKSTYEGDLVVECYFGKQKFVWKLLDGNLKNKIDIQSSDIVSLKSTYNKDGLGMLDIVLAR

Homology

[Close]

BLAST of Tan0013424 vs. NCBI nr
Match: XP_038904139.1 (uncharacterized protein LOC120090500 [Benincasa hispida])

HSP 1 Score: 134.4 bits (337), Expect = 7.3e-28
Identity = 74/124 (59.68%), Postives = 85/124 (68.55%), Query Frame = 0


Query: 17  DSAKLASLIK---KGANAFSTVAKLKVSNFPALILMIGFWETPISFSSSFLGDSCHPLDI 76
           ++AKLA+L K   KG+NAFST  KLK SNFPALIL IG WE                   
Sbjct: 90  ETAKLATLSKKDHKGSNAFSTADKLKASNFPALILKIGSWE------------------- 149

Query: 77  SRDYKSTYEGDLVVECYFGKQKFVWKLLDGNLKNKIDIQSSDIVSLKSTYNKDGLGMLDI 136
              YKS YEGDLV +CYF K K VW+LLDGNLKNKI+IQ SDIV+LK+TY +DGLG LD+
Sbjct: 150 ---YKSRYEGDLVAKCYFAKHKLVWELLDGNLKNKIEIQWSDIVALKATYPEDGLGTLDV 191

Query: 137 VLAR 138
           VLAR
Sbjct: 210 VLAR 191

[Close]

BLAST of Tan0013424 vs. NCBI nr
Match: XP_004137649.1 (uncharacterized protein LOC101216149 [Cucumis sativus] >KGN58644.1 hypothetical protein Csa_002695 [Cucumis sativus])

HSP 1 Score: 131.7 bits (330), Expect = 4.7e-27
Identity = 73/124 (58.87%), Postives = 83/124 (66.94%), Query Frame = 0


Query: 17  DSAKLASLIK---KGANAFSTVAKLKVSNFPALILMIGFWETPISFSSSFLGDSCHPLDI 76
           ++AKL SL K   KG NAF+T  KLK SNFPALIL IG WE                   
Sbjct: 90  ETAKLDSLSKKDQKGGNAFTTADKLKASNFPALILKIGTWE------------------- 149

Query: 77  SRDYKSTYEGDLVVECYFGKQKFVWKLLDGNLKNKIDIQSSDIVSLKSTYNKDGLGMLDI 136
              YKS YEGDLV +CYF K K VW+LLDGNLKNKI+IQ SDIV+LK+TY +DGLG LD+
Sbjct: 150 ---YKSRYEGDLVAKCYFAKHKLVWELLDGNLKNKIEIQWSDIVALKATYPEDGLGTLDV 191

Query: 137 VLAR 138
           VLAR
Sbjct: 210 VLAR 191

[Close]

BLAST of Tan0013424 vs. NCBI nr
Match: XP_023526769.1 (uncharacterized protein LOC111790164 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 131.3 bits (329), Expect = 6.2e-27
Identity = 72/124 (58.06%), Postives = 82/124 (66.13%), Query Frame = 0


Query: 17  DSAKLASLIK---KGANAFSTVAKLKVSNFPALILMIGFWETPISFSSSFLGDSCHPLDI 76
           ++A+LA+L K   KGAN FST  KLK SNFPALIL IG WE                   
Sbjct: 91  ETAELATLSKKEQKGANGFSTADKLKASNFPALILKIGTWE------------------- 150

Query: 77  SRDYKSTYEGDLVVECYFGKQKFVWKLLDGNLKNKIDIQSSDIVSLKSTYNKDGLGMLDI 136
              YKS YEGDLV +CYF K K VW+LLDGNLKNKI+IQ SDI+ LK+TY  DGLG LD+
Sbjct: 151 ---YKSRYEGDLVAKCYFAKHKLVWELLDGNLKNKIEIQWSDIIDLKATYANDGLGTLDV 192

Query: 137 VLAR 138
           VLAR
Sbjct: 211 VLAR 192

[Close]

BLAST of Tan0013424 vs. NCBI nr
Match: XP_008462951.1 (PREDICTED: uncharacterized protein LOC103501212 [Cucumis melo] >KAA0034944.1 uncharacterized protein E6C27_scaffold434G00070 [Cucumis melo var. makuwa] >TYK21299.1 uncharacterized protein E5676_scaffold1199G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 131.3 bits (329), Expect = 6.2e-27
Identity = 72/124 (58.06%), Postives = 83/124 (66.94%), Query Frame = 0


Query: 17  DSAKLASLIK---KGANAFSTVAKLKVSNFPALILMIGFWETPISFSSSFLGDSCHPLDI 76
           ++AKL +L K   KG NAF+T  KLK SNFPALIL IG WE                   
Sbjct: 90  ETAKLGTLSKKDQKGGNAFTTADKLKASNFPALILKIGTWE------------------- 149

Query: 77  SRDYKSTYEGDLVVECYFGKQKFVWKLLDGNLKNKIDIQSSDIVSLKSTYNKDGLGMLDI 136
              YKS YEGDLV +CYF K K VW+LLDGNLKNKI+IQ SDIV+LK+TY +DGLG LD+
Sbjct: 150 ---YKSRYEGDLVAKCYFAKHKLVWELLDGNLKNKIEIQWSDIVALKATYPEDGLGTLDV 191

Query: 137 VLAR 138
           VLAR
Sbjct: 210 VLAR 191

[Close]

BLAST of Tan0013424 vs. NCBI nr
Match: XP_022153415.1 (uncharacterized protein LOC111020927 [Momordica charantia])

HSP 1 Score: 131.3 bits (329), Expect = 6.2e-27
Identity = 73/124 (58.87%), Postives = 83/124 (66.94%), Query Frame = 0


Query: 17  DSAKLASLIK---KGANAFSTVAKLKVSNFPALILMIGFWETPISFSSSFLGDSCHPLDI 76
           ++AKLA+L K   KGA AFS   KLK SNFPALIL IG WE                   
Sbjct: 90  ETAKLANLSKKDHKGATAFSAADKLKASNFPALILKIGTWE------------------- 149

Query: 77  SRDYKSTYEGDLVVECYFGKQKFVWKLLDGNLKNKIDIQSSDIVSLKSTYNKDGLGMLDI 136
              YKS YEGDLV +CYF K K VW+LLDGNLKNKI+IQ SDIV+LK+TY +DGLG LD+
Sbjct: 150 ---YKSRYEGDLVAKCYFAKHKLVWELLDGNLKNKIEIQWSDIVALKATYAEDGLGTLDV 191

Query: 137 VLAR 138
           VLAR
Sbjct: 210 VLAR 191

[Close]

BLAST of Tan0013424 vs. ExPASy TrEMBL
Match: A0A0A0LCI0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G710230 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 2.3e-27
Identity = 73/124 (58.87%), Postives = 83/124 (66.94%), Query Frame = 0


Query: 17  DSAKLASLIK---KGANAFSTVAKLKVSNFPALILMIGFWETPISFSSSFLGDSCHPLDI 76
           ++AKL SL K   KG NAF+T  KLK SNFPALIL IG WE                   
Sbjct: 90  ETAKLDSLSKKDQKGGNAFTTADKLKASNFPALILKIGTWE------------------- 149

Query: 77  SRDYKSTYEGDLVVECYFGKQKFVWKLLDGNLKNKIDIQSSDIVSLKSTYNKDGLGMLDI 136
              YKS YEGDLV +CYF K K VW+LLDGNLKNKI+IQ SDIV+LK+TY +DGLG LD+
Sbjct: 150 ---YKSRYEGDLVAKCYFAKHKLVWELLDGNLKNKIEIQWSDIVALKATYPEDGLGTLDV 191

Query: 137 VLAR 138
           VLAR
Sbjct: 210 VLAR 191

[Close]

BLAST of Tan0013424 vs. ExPASy TrEMBL
Match: A0A5D3DDG2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1199G00070 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 3.0e-27
Identity = 72/124 (58.06%), Postives = 83/124 (66.94%), Query Frame = 0


Query: 17  DSAKLASLIK---KGANAFSTVAKLKVSNFPALILMIGFWETPISFSSSFLGDSCHPLDI 76
           ++AKL +L K   KG NAF+T  KLK SNFPALIL IG WE                   
Sbjct: 90  ETAKLGTLSKKDQKGGNAFTTADKLKASNFPALILKIGTWE------------------- 149

Query: 77  SRDYKSTYEGDLVVECYFGKQKFVWKLLDGNLKNKIDIQSSDIVSLKSTYNKDGLGMLDI 136
              YKS YEGDLV +CYF K K VW+LLDGNLKNKI+IQ SDIV+LK+TY +DGLG LD+
Sbjct: 150 ---YKSRYEGDLVAKCYFAKHKLVWELLDGNLKNKIEIQWSDIVALKATYPEDGLGTLDV 191

Query: 137 VLAR 138
           VLAR
Sbjct: 210 VLAR 191

[Close]

BLAST of Tan0013424 vs. ExPASy TrEMBL
Match: A0A6J1DGS5 (uncharacterized protein LOC111020927 OS=Momordica charantia OX=3673 GN=LOC111020927 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 3.0e-27
Identity = 73/124 (58.87%), Postives = 83/124 (66.94%), Query Frame = 0


Query: 17  DSAKLASLIK---KGANAFSTVAKLKVSNFPALILMIGFWETPISFSSSFLGDSCHPLDI 76
           ++AKLA+L K   KGA AFS   KLK SNFPALIL IG WE                   
Sbjct: 90  ETAKLANLSKKDHKGATAFSAADKLKASNFPALILKIGTWE------------------- 149

Query: 77  SRDYKSTYEGDLVVECYFGKQKFVWKLLDGNLKNKIDIQSSDIVSLKSTYNKDGLGMLDI 136
              YKS YEGDLV +CYF K K VW+LLDGNLKNKI+IQ SDIV+LK+TY +DGLG LD+
Sbjct: 150 ---YKSRYEGDLVAKCYFAKHKLVWELLDGNLKNKIEIQWSDIVALKATYAEDGLGTLDV 191

Query: 137 VLAR 138
           VLAR
Sbjct: 210 VLAR 191

[Close]

BLAST of Tan0013424 vs. ExPASy TrEMBL
Match: A0A1S3CI35 (uncharacterized protein LOC103501212 OS=Cucumis melo OX=3656 GN=LOC103501212 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 3.0e-27
Identity = 72/124 (58.06%), Postives = 83/124 (66.94%), Query Frame = 0


Query: 17  DSAKLASLIK---KGANAFSTVAKLKVSNFPALILMIGFWETPISFSSSFLGDSCHPLDI 76
           ++AKL +L K   KG NAF+T  KLK SNFPALIL IG WE                   
Sbjct: 90  ETAKLGTLSKKDQKGGNAFTTADKLKASNFPALILKIGTWE------------------- 149

Query: 77  SRDYKSTYEGDLVVECYFGKQKFVWKLLDGNLKNKIDIQSSDIVSLKSTYNKDGLGMLDI 136
              YKS YEGDLV +CYF K K VW+LLDGNLKNKI+IQ SDIV+LK+TY +DGLG LD+
Sbjct: 150 ---YKSRYEGDLVAKCYFAKHKLVWELLDGNLKNKIEIQWSDIVALKATYPEDGLGTLDV 191

Query: 137 VLAR 138
           VLAR
Sbjct: 210 VLAR 191

[Close]

BLAST of Tan0013424 vs. ExPASy TrEMBL
Match: A0A6J1F313 (uncharacterized protein LOC111441679 OS=Cucurbita moschata OX=3662 GN=LOC111441679 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 3.9e-27
Identity = 72/124 (58.06%), Postives = 82/124 (66.13%), Query Frame = 0


Query: 17  DSAKLASLIK---KGANAFSTVAKLKVSNFPALILMIGFWETPISFSSSFLGDSCHPLDI 76
           ++A+LA+L K   KGAN FST  KLK SNFPALIL IG WE                   
Sbjct: 91  ETAELATLSKKEQKGANGFSTADKLKASNFPALILKIGTWE------------------- 150

Query: 77  SRDYKSTYEGDLVVECYFGKQKFVWKLLDGNLKNKIDIQSSDIVSLKSTYNKDGLGMLDI 136
              YKS YEGDLV +CYF K K VW+LLDGNLKNKI+IQ SDI+ LK+TY  DGLG LD+
Sbjct: 151 ---YKSRYEGDLVAKCYFAKHKLVWELLDGNLKNKIEIQWSDIIDLKATYADDGLGTLDV 192

Query: 137 VLAR 138
           VLAR
Sbjct: 211 VLAR 192

[Close]

BLAST of Tan0013424 vs. TAIR 10
Match: AT2G24100.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30780.1); Has 101 Blast hits to 101 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). )

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-19
Identity = 53/110 (48.18%), Postives = 63/110 (57.27%), Query Frame = 0


Query: 28  GANAFSTVAKLKVSNFPALILMIGFWETPISFSSSFLGDSCHPLDISRDYKSTYEGDLVV 87
           G     TV KLK SNFPA IL IG WE                      YKS YEGDLV 
Sbjct: 99  GFGGVGTVEKLKASNFPATILRIGQWE----------------------YKSRYEGDLVA 158

Query: 88  ECYFGKQKFVWKLLDGNLKNKIDIQSSDIVSLKSTYNKDGLGMLDIVLAR 138
           +CYF K K VW++L+  LK+KI+IQ SDI++LK+   +D  G L IVLAR
Sbjct: 159 KCYFAKHKLVWEVLEQGLKSKIEIQWSDIMALKANLPEDEPGTLTIVLAR 186

[Close]

BLAST of Tan0013424 vs. TAIR 10
Match: AT4G30780.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24100.1); Has 109 Blast hits to 109 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). )

HSP 1 Score: 91.3 bits (225), Expect = 6.6e-19
Identity = 49/104 (47.12%), Postives = 63/104 (60.58%), Query Frame = 0


Query: 34  TVAKLKVSNFPALILMIGFWETPISFSSSFLGDSCHPLDISRDYKSTYEGDLVVECYFGK 93
           ++ KLK SNFPA +L IG WE                      YKS YEGDLV +CYF K
Sbjct: 132 SIEKLKASNFPASLLKIGQWE----------------------YKSRYEGDLVAKCYFAK 191

Query: 94  QKFVWKLLDGNLKNKIDIQSSDIVSLKSTYNKDGLGMLDIVLAR 138
            K VW++L+  LK+KI+IQ SDI++LK+   +DG G L +VLAR
Sbjct: 192 HKLVWEVLEQGLKSKIEIQWSDIMALKANCPEDGPGTLTLVLAR 213

The following BLAST results are available for this feature:

BLAST of Tan0013424 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0013424 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904139.1	7.3e-28	59.68	uncharacterized protein LOC120090500 [Benincasa hispida]	[more]
XP_004137649.1	4.7e-27	58.87	uncharacterized protein LOC101216149 [Cucumis sativus] >KGN58644.1 hypothetical ...	[more]
XP_023526769.1	6.2e-27	58.06	uncharacterized protein LOC111790164 [Cucurbita pepo subsp. pepo]	[more]
XP_008462951.1	6.2e-27	58.06	PREDICTED: uncharacterized protein LOC103501212 [Cucumis melo] >KAA0034944.1 unc...	[more]
XP_022153415.1	6.2e-27	58.87	uncharacterized protein LOC111020927 [Momordica charantia]	[more]

BLAST of Tan0013424 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCI0	2.3e-27	58.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G710230 PE=4 SV=1	[more]
A0A5D3DDG2	3.0e-27	58.06	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1DGS5	3.0e-27	58.87	uncharacterized protein LOC111020927 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A1S3CI35	3.0e-27	58.06	uncharacterized protein LOC103501212 OS=Cucumis melo OX=3656 GN=LOC103501212 PE=...	[more]
A0A6J1F313	3.9e-27	58.06	uncharacterized protein LOC111441679 OS=Cucurbita moschata OX=3662 GN=LOC1114416...	[more]

BLAST of Tan0013424 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G24100.1	1.3e-19	48.18	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G30780.1	6.6e-19	47.12	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33494	OS02G0793800 PROTEIN	coord: 76..137
None	No IPR available	PANTHER	PTHR33494:SF19	ATP-DEPENDENT DNA HELICASE	coord: 26..55
None	No IPR available	PANTHER	PTHR33494	OS02G0793800 PROTEIN	coord: 26..55
None	No IPR available	PANTHER	PTHR33494:SF19	ATP-DEPENDENT DNA HELICASE	coord: 76..137

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0013424.1	Tan0013424.1	mRNA