Tan0013218 (gene) Snake gourd v1

Overview
NameTan0013218
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionHyphally-regulated protein-like
LocationLG05: 29144794 .. 29145066 (+)
RNA-Seq ExpressionTan0013218
SyntenyTan0013218
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATTTTGAGCTTCCTTTTGATTGTTTCGTTGCTGGGTAATGGAATTAGTTTGCTTGAAATTGTAGAAGCAAGGCCTCTCCATATGGTGACCGCGACGGCTACTACCGGCCATTTGTTGGCCGAATTATCTCATGGAGCCATCAATCAGTCCGGTCCGAGCCCTGGTGATGGCCACAACTTCACCCATGTCCATACTCTCGGCGGCATCAACGACACGGCCCCAAGCCCCGGCGTTGGCAACAGCCTACTCACCGACCAACACCATTAA

mRNA sequence

ATGAAGATTTTGAGCTTCCTTTTGATTGTTTCGTTGCTGGGTAATGGAATTAGTTTGCTTGAAATTGTAGAAGCAAGGCCTCTCCATATGGTGACCGCGACGGCTACTACCGGCCATTTGTTGGCCGAATTATCTCATGGAGCCATCAATCAGTCCGGTCCGAGCCCTGGTGATGGCCACAACTTCACCCATGTCCATACTCTCGGCGGCATCAACGACACGGCCCCAAGCCCCGGCGTTGGCAACAGCCTACTCACCGACCAACACCATTAA

Coding sequence (CDS)

ATGAAGATTTTGAGCTTCCTTTTGATTGTTTCGTTGCTGGGTAATGGAATTAGTTTGCTTGAAATTGTAGAAGCAAGGCCTCTCCATATGGTGACCGCGACGGCTACTACCGGCCATTTGTTGGCCGAATTATCTCATGGAGCCATCAATCAGTCCGGTCCGAGCCCTGGTGATGGCCACAACTTCACCCATGTCCATACTCTCGGCGGCATCAACGACACGGCCCCAAGCCCCGGCGTTGGCAACAGCCTACTCACCGACCAACACCATTAA

Protein sequence

MKILSFLLIVSLLGNGISLLEIVEARPLHMVTATATTGHLLAELSHGAINQSGPSPGDGHNFTHVHTLGGINDTAPSPGVGNSLLTDQHH
Homology
BLAST of Tan0013218 vs. NCBI nr
Match: KAE8647505.1 (hypothetical protein Csa_003084 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 1.0e-09
Identity = 42/93 (45.16%), Postives = 59/93 (63.44%), Query Frame = 0

Query: 4   LSFLLIVSLLGNGISLLEIVEARPLHMVTATATTGHLLAE-----LSHGAINQSGPSP-G 63
           + F+L+ +LLGNG  L+ + +ARPL ++   + +   +AE     LS GAI QSGPS  G
Sbjct: 15  IGFILVAALLGNG-GLVTVTDARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQSGPSAGG 74

Query: 64  DGHNFTHVHTLGGINDTAPSPGVGNSLLTDQHH 91
           DGH F +  TLGGI D+ P+PG G+  +T  HH
Sbjct: 75  DGHKFVNYDTLGGIKDSGPAPGDGHRHITSSHH 106

BLAST of Tan0013218 vs. NCBI nr
Match: KAG6571202.1 (hypothetical protein SDJN03_30117, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 71.2 bits (173), Expect = 5.0e-09
Identity = 55/114 (48.25%), Postives = 63/114 (55.26%), Query Frame = 0

Query: 1   MKILSFLLIVSLLGNGISLLEIVEARPLHMVTATATTGHLLAELSHGAINQSGPS-PGDG 60
           MKILSF+LI+SLL N  S    V+AR LHM   T TT + L  LS GAI   G S  GDG
Sbjct: 1   MKILSFVLILSLLSNE-SCFGTVQARHLHMTNFT-TTRNFLGGLSFGAIKNFGSSCSGDG 60

Query: 61  HNFTHVHTLGGI--------------ND---------TAPSPGVGNSLLTDQHH 91
           HNFT V TLGGI              ND         +APSPG+ ++L  DQHH
Sbjct: 61  HNFTDVVTLGGIKNSGPSPSGNCHNFNDVVTLDCIKSSAPSPGISHNLDIDQHH 112

BLAST of Tan0013218 vs. NCBI nr
Match: KAG6595008.1 (PAMP-induced secreted peptide 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027036.1 hypothetical protein SDJN02_11045, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 67.4 bits (163), Expect = 7.2e-08
Identity = 41/86 (47.67%), Postives = 53/86 (61.63%), Query Frame = 0

Query: 2  KILSFLLIVSLLGNGISLLEIVEARPLHMVTATATTGHLLAELSHGAINQSGPSP-GDGH 61
          K+L  L++V+ L  G   L   EARPL+ + + A        LS GAI QSGPSP GDGH
Sbjct: 6  KLLIGLILVAALLAGNGGLVATEARPLNAMASAAIAEDFFEGLSLGAIKQSGPSPGGDGH 65

Query: 62 NFTHVHTLGGINDTAPSPGVGNSLLT 87
           F +  TLGGI ++ PSPG G+S +T
Sbjct: 66 KFVNFDTLGGIKESGPSPGDGHSHIT 91

BLAST of Tan0013218 vs. NCBI nr
Match: TQD70601.1 (hypothetical protein C1H46_043863 [Malus baccata])

HSP 1 Score: 65.9 bits (159), Expect = 2.1e-07
Identity = 41/87 (47.13%), Postives = 52/87 (59.77%), Query Frame = 0

Query: 2  KILSFLLIVSLLGNGISLLEIVEARPLHMVTAT-----ATTGHLLAELSHGAINQSGPSP 61
          K  SF+L++ LL    S    V ARPL+++        AT G     LS GAI QSGPSP
Sbjct: 4  KFFSFVLLLLLLN---STFIAVSARPLNIMKYRSSGFGATAGGFFDGLSLGAIKQSGPSP 63

Query: 62 GDGHNFTHVHTLGGINDTAPSPGVGNS 84
          G+GH  T+  TLGGI  + PSPG+GN+
Sbjct: 64 GEGHKLTNKQTLGGIKKSGPSPGIGNA 87

BLAST of Tan0013218 vs. NCBI nr
Match: KAG6724903.1 (hypothetical protein I3842_02G006100 [Carya illinoinensis])

HSP 1 Score: 65.1 bits (157), Expect = 3.6e-07
Identity = 35/76 (46.05%), Postives = 41/76 (53.95%), Query Frame = 0

Query: 18 SLLEIVEARPLHMVTATATTGH-----LLAELSHGAINQSGPSPGDGHNFTHVHTLGGIN 77
          S+    EARP +++   +   H         LS GAI QSGPSPGDGH FT   TLGGI 
Sbjct: 19 SIFIATEARPFNVMETRSAVDHGGCGGFFDGLSLGAIKQSGPSPGDGHKFTQQQTLGGIK 78

Query: 78 DTAPSPGVGNSLLTDQ 89
           + PSPG GN     Q
Sbjct: 79 QSGPSPGDGNKFTQQQ 94

BLAST of Tan0013218 vs. ExPASy TrEMBL
Match: A0A540K8P5 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_043863 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.0e-07
Identity = 41/87 (47.13%), Postives = 52/87 (59.77%), Query Frame = 0

Query: 2  KILSFLLIVSLLGNGISLLEIVEARPLHMVTAT-----ATTGHLLAELSHGAINQSGPSP 61
          K  SF+L++ LL    S    V ARPL+++        AT G     LS GAI QSGPSP
Sbjct: 4  KFFSFVLLLLLLN---STFIAVSARPLNIMKYRSSGFGATAGGFFDGLSLGAIKQSGPSP 63

Query: 62 GDGHNFTHVHTLGGINDTAPSPGVGNS 84
          G+GH  T+  TLGGI  + PSPG+GN+
Sbjct: 64 GEGHKLTNKQTLGGIKKSGPSPGIGNA 87

BLAST of Tan0013218 vs. ExPASy TrEMBL
Match: A0A5B6Z0M1 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_006224 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 5.0e-07
Identity = 39/93 (41.94%), Postives = 52/93 (55.91%), Query Frame = 0

Query: 1  MKILSFLLIVSLLGNGISLLEIVEARPLHMVTATAT-----TGHLLAELSHGAINQSGPS 60
          +K L  + ++ LL    S+L   EARP +++ + A+      G     LS GAI  SGPS
Sbjct: 6  IKSLGIIFLIPLLS---SILFATEARPFNVLESHASGSGDINGGFFDGLSLGAIKNSGPS 65

Query: 61 PGDGHNFTHVHTLGGINDTAPSPGVGNSLLTDQ 89
          PG GH F +  TLGGIND  PSPG G+    +Q
Sbjct: 66 PGAGHQFINSQTLGGINDAGPSPGQGHKFTNEQ 95

BLAST of Tan0013218 vs. ExPASy TrEMBL
Match: A0A2I4DLA2 (uncharacterized protein LOC108981271 OS=Juglans regia OX=51240 GN=LOC108981271 PE=4 SV=2)

HSP 1 Score: 63.5 bits (153), Expect = 5.0e-07
Identity = 34/76 (44.74%), Postives = 41/76 (53.95%), Query Frame = 0

Query: 18 SLLEIVEARPLHMVTATATTGH-----LLAELSHGAINQSGPSPGDGHNFTHVHTLGGIN 77
          S+    EARP +++   +   H         LS GAI QSGPSPGDGH FT   TLGGI 
Sbjct: 19 SIFIATEARPFNVLETRSAANHGGCGGFFDGLSLGAIKQSGPSPGDGHKFTQQQTLGGIK 78

Query: 78 DTAPSPGVGNSLLTDQ 89
           + PSPG G+     Q
Sbjct: 79 QSGPSPGDGHKFTQQQ 94

BLAST of Tan0013218 vs. ExPASy TrEMBL
Match: A0A5N5HF89 (Hyphally-regulated protein-like OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_020133 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 5.0e-07
Identity = 40/86 (46.51%), Postives = 52/86 (60.47%), Query Frame = 0

Query: 2  KILSFLLIVSLLGNGISLLEIVEARPLHMV----TATATTGHLLAELSHGAINQSGPSPG 61
          K  SF+L++ LL    S    V ARPL+++    +    T      LS GAI QSGPSPG
Sbjct: 4  KFFSFILLLLLLN---STFIAVCARPLNIMKYRSSGFGATEGFFDGLSLGAIKQSGPSPG 63

Query: 62 DGHNFTHVHTLGGINDTAPSPGVGNS 84
          +GH FT+  TLGGI ++ PSPG GN+
Sbjct: 64 EGHKFTNKQTLGGIKNSGPSPGTGNT 86

BLAST of Tan0013218 vs. ExPASy TrEMBL
Match: A0A2K1ZPH4 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_007G049500 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 8.6e-07
Identity = 42/95 (44.21%), Postives = 53/95 (55.79%), Query Frame = 0

Query: 1  MKILSFLLIVSLLGNGISLLEIVEARPLHMV-TATATTGHLLAE----LSHGAINQSGPS 60
          +K LSF + V LL N +  +E  EARP +++ +  + T   +      LS G I QSGPS
Sbjct: 5  LKSLSFFVFVFLLVNSLFFIE-TEARPFNILKSGNSATSRAIESFFDGLSLGEIKQSGPS 64

Query: 61 PGDGHNFTHVHTLGGINDTAPSPGVGNSLLTDQHH 91
          PG GH FT+  TLGGI    PSP  GN   T  HH
Sbjct: 65 PGVGHEFTNSQTLGGIK-AGPSPCCGNKYTTGTHH 97

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAE8647505.11.0e-0945.16hypothetical protein Csa_003084 [Cucumis sativus][more]
KAG6571202.15.0e-0948.25hypothetical protein SDJN03_30117, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6595008.17.2e-0847.67PAMP-induced secreted peptide 2, partial [Cucurbita argyrosperma subsp. sororia]... [more]
TQD70601.12.1e-0747.13hypothetical protein C1H46_043863 [Malus baccata][more]
KAG6724903.13.6e-0746.05hypothetical protein I3842_02G006100 [Carya illinoinensis][more]
Match NameE-valueIdentityDescription
A0A540K8P51.0e-0747.13Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_043863 PE=4 SV=1[more]
A0A5B6Z0M15.0e-0741.94Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_006224... [more]
A0A2I4DLA25.0e-0744.74uncharacterized protein LOC108981271 OS=Juglans regia OX=51240 GN=LOC108981271 P... [more]
A0A5N5HF895.0e-0746.51Hyphally-regulated protein-like OS=Pyrus ussuriensis x Pyrus communis OX=2448454... [more]
A0A2K1ZPH48.6e-0744.21Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_007G049500 PE=4 ... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..90
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..90
IPR044700PIP2/PIPL1PANTHERPTHR34663OS06G0637400 PROTEINcoord: 2..89

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0013218.1Tan0013218.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045087 innate immune response
biological_process GO:0050793 regulation of developmental process