Tan0012435 (gene) Snake gourd v1

Overview


Name	Tan0012435
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Location	LG07: 42504019 .. 42504252 (+)
RNA-Seq Expression	Tan0012435
Synteny	Tan0012435

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGACATCTTAGCCAAAAAGCATGAGGGCATGATAACCGCCAAGGAAATCATGGATTTCGTGCAAGGTATGTTTGGACAACTGTCCACACAGGCCCGACACAATGCCCTAAAGTACATATTCAACTCGAGGATGCTAGAGGGAACATCTATTCAGGATCATGTCCTTGATATGATGGTGCACTTCAACATCGCGGAGTCGAATGGTGATTCCATCGATGAATCGAGCTAG

mRNA sequence

ATGTCTGACATCTTAGCCAAAAAGCATGAGGGCATGATAACCGCCAAGGAAATCATGGATTTCGTGCAAGGTATGTTTGGACAACTGTCCACACAGGCCCGACACAATGCCCTAAAGTACATATTCAACTCGAGGATGCTAGAGGGAACATCTATTCAGGATCATGTCCTTGATATGATGGTGCACTTCAACATCGCGGAGTCGAATGGTGATTCCATCGATGAATCGAGCTAG

Coding sequence (CDS)

ATGTCTGACATCTTAGCCAAAAAGCATGAGGGCATGATAACCGCCAAGGAAATCATGGATTTCGTGCAAGGTATGTTTGGACAACTGTCCACACAGGCCCGACACAATGCCCTAAAGTACATATTCAACTCGAGGATGCTAGAGGGAACATCTATTCAGGATCATGTCCTTGATATGATGGTGCACTTCAACATCGCGGAGTCGAATGGTGATTCCATCGATGAATCGAGCTAG

Protein sequence

MSDILAKKHEGMITAKEIMDFVQGMFGQLSTQARHNALKYIFNSRMLEGTSIQDHVLDMMVHFNIAESNGDSIDESS

Homology

[Close]

BLAST of Tan0012435 vs. NCBI nr
Match: XP_022152352.1 (uncharacterized protein LOC111020095 [Momordica charantia])

HSP 1 Score: 112.5 bits (280), Expect = 1.7e-21
Identity = 53/75 (70.67%), Postives = 66/75 (88.00%), Query Frame = 0


Query: 1   MSDILAKKHEGMITAKEIMDFVQGMFGQLSTQARHNALKYIFNSRMLEGTSIQDHVLDMM 60
           +SD+LAKKHE  ITAKEIMD +Q MFGQ S+QARH ALK+I+NSRM EG+S+++HVL++M
Sbjct: 77  ISDVLAKKHEDTITAKEIMDSLQSMFGQPSSQARHEALKFIYNSRMKEGSSVREHVLNLM 136

Query: 61  VHFNIAESNGDSIDE 76
           VHFN+AESNG  IDE
Sbjct: 137 VHFNVAESNGAVIDE 151

[Close]

BLAST of Tan0012435 vs. NCBI nr
Match: XP_022155999.1 (uncharacterized protein LOC111022974 [Momordica charantia])

HSP 1 Score: 110.5 bits (275), Expect = 6.4e-21
Identity = 52/77 (67.53%), Postives = 65/77 (84.42%), Query Frame = 0


Query: 1   MSDILAKKHEGMITAKEIMDFVQGMFGQLSTQARHNALKYIFNSRMLEGTSIQDHVLDMM 60
           +SD+LAKKHE M+ A+EIMD ++ MFGQ S QARH ALK+I+NSRM EGTS+Q+HVL++M
Sbjct: 35  ISDVLAKKHENMVNAQEIMDSLRDMFGQPSIQARHEALKFIYNSRMKEGTSMQEHVLNLM 94

Query: 61  VHFNIAESNGDSIDESS 78
           VHFN+AE NG  IDE S
Sbjct: 95  VHFNVAEMNGAVIDEGS 111

[Close]

BLAST of Tan0012435 vs. NCBI nr
Match: XP_022158197.1 (uncharacterized protein LOC111024734 [Momordica charantia])

HSP 1 Score: 110.5 bits (275), Expect = 6.4e-21
Identity = 51/77 (66.23%), Postives = 65/77 (84.42%), Query Frame = 0


Query: 1   MSDILAKKHEGMITAKEIMDFVQGMFGQLSTQARHNALKYIFNSRMLEGTSIQDHVLDMM 60
           +SD+LAKKHE  +T KEIMD +Q MFGQ S QARH ALK+++NSRM EG+S+++HVL++M
Sbjct: 77  ISDVLAKKHEDTVTTKEIMDSLQSMFGQPSLQARHEALKFVYNSRMKEGSSVREHVLNLM 136

Query: 61  VHFNIAESNGDSIDESS 78
           VHFN+AESNG  IDE S
Sbjct: 137 VHFNVAESNGIVIDEQS 153

[Close]

BLAST of Tan0012435 vs. NCBI nr
Match: KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 109.0 bits (271), Expect = 1.8e-20
Identity = 50/77 (64.94%), Postives = 66/77 (85.71%), Query Frame = 0


Query: 1   MSDILAKKHEGMITAKEIMDFVQGMFGQLSTQARHNALKYIFNSRMLEGTSIQDHVLDMM 60
           +S++LAKKHE M+TA+EIMD +Q MFGQ S Q +H+ALKYI+N+RM EG S+++HVL+MM
Sbjct: 77  LSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMM 136

Query: 61  VHFNIAESNGDSIDESS 78
           VHFN+AE NG  IDE+S
Sbjct: 137 VHFNVAEMNGAVIDEAS 153

[Close]

BLAST of Tan0012435 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 109.0 bits (271), Expect = 1.8e-20
Identity = 50/77 (64.94%), Postives = 66/77 (85.71%), Query Frame = 0


Query: 1   MSDILAKKHEGMITAKEIMDFVQGMFGQLSTQARHNALKYIFNSRMLEGTSIQDHVLDMM 60
           +S++LAKKHE M+TA+EIMD +Q MFGQ S Q +H+ALKYI+N+RM EG S+++HVL+MM
Sbjct: 76  LSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMM 135

Query: 61  VHFNIAESNGDSIDESS 78
           VHFN+AE NG  IDE+S
Sbjct: 136 VHFNVAEMNGAVIDEAS 152

[Close]

BLAST of Tan0012435 vs. ExPASy TrEMBL
Match: A0A6J1DFZ2 (uncharacterized protein LOC111020095 OS=Momordica charantia OX=3673 GN=LOC111020095 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 8.1e-22
Identity = 53/75 (70.67%), Postives = 66/75 (88.00%), Query Frame = 0


Query: 1   MSDILAKKHEGMITAKEIMDFVQGMFGQLSTQARHNALKYIFNSRMLEGTSIQDHVLDMM 60
           +SD+LAKKHE  ITAKEIMD +Q MFGQ S+QARH ALK+I+NSRM EG+S+++HVL++M
Sbjct: 77  ISDVLAKKHEDTITAKEIMDSLQSMFGQPSSQARHEALKFIYNSRMKEGSSVREHVLNLM 136

Query: 61  VHFNIAESNGDSIDE 76
           VHFN+AESNG  IDE
Sbjct: 137 VHFNVAESNGAVIDE 151

[Close]

BLAST of Tan0012435 vs. ExPASy TrEMBL
Match: A0A6J1DWL0 (uncharacterized protein LOC111024734 OS=Momordica charantia OX=3673 GN=LOC111024734 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.1e-21
Identity = 51/77 (66.23%), Postives = 65/77 (84.42%), Query Frame = 0


Query: 1   MSDILAKKHEGMITAKEIMDFVQGMFGQLSTQARHNALKYIFNSRMLEGTSIQDHVLDMM 60
           +SD+LAKKHE  +T KEIMD +Q MFGQ S QARH ALK+++NSRM EG+S+++HVL++M
Sbjct: 77  ISDVLAKKHEDTVTTKEIMDSLQSMFGQPSLQARHEALKFVYNSRMKEGSSVREHVLNLM 136

Query: 61  VHFNIAESNGDSIDESS 78
           VHFN+AESNG  IDE S
Sbjct: 137 VHFNVAESNGIVIDEQS 153

[Close]

BLAST of Tan0012435 vs. ExPASy TrEMBL
Match: A0A6J1DRZ2 (uncharacterized protein LOC111022974 OS=Momordica charantia OX=3673 GN=LOC111022974 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.1e-21
Identity = 52/77 (67.53%), Postives = 65/77 (84.42%), Query Frame = 0


Query: 1   MSDILAKKHEGMITAKEIMDFVQGMFGQLSTQARHNALKYIFNSRMLEGTSIQDHVLDMM 60
           +SD+LAKKHE M+ A+EIMD ++ MFGQ S QARH ALK+I+NSRM EGTS+Q+HVL++M
Sbjct: 35  ISDVLAKKHENMVNAQEIMDSLRDMFGQPSIQARHEALKFIYNSRMKEGTSMQEHVLNLM 94

Query: 61  VHFNIAESNGDSIDESS 78
           VHFN+AE NG  IDE S
Sbjct: 95  VHFNVAEMNGAVIDEGS 111

[Close]

BLAST of Tan0012435 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 8.9e-21
Identity = 50/77 (64.94%), Postives = 66/77 (85.71%), Query Frame = 0


Query: 1   MSDILAKKHEGMITAKEIMDFVQGMFGQLSTQARHNALKYIFNSRMLEGTSIQDHVLDMM 60
           +S++LAKKHE M+TA+EIMD +Q MFGQ S Q +H+ALKYI+N+RM EG S+++HVL+MM
Sbjct: 77  LSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMM 136

Query: 61  VHFNIAESNGDSIDESS 78
           VHFN+AE NG  IDE+S
Sbjct: 137 VHFNVAEMNGAVIDEAS 153

[Close]

BLAST of Tan0012435 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 8.9e-21
Identity = 50/77 (64.94%), Postives = 66/77 (85.71%), Query Frame = 0


Query: 1   MSDILAKKHEGMITAKEIMDFVQGMFGQLSTQARHNALKYIFNSRMLEGTSIQDHVLDMM 60
           +S++LAKKHE M+TA+EIMD +Q MFGQ S Q +H+ALKYI+N+RM EG S+++HVL+MM
Sbjct: 77  LSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMM 136

Query: 61  VHFNIAESNGDSIDESS 78
           VHFN+AE NG  IDE+S
Sbjct: 137 VHFNVAEMNGAVIDEAS 153

The following BLAST results are available for this feature:

BLAST of Tan0012435 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0012435 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152352.1	1.7e-21	70.67	uncharacterized protein LOC111020095 [Momordica charantia]	[more]
XP_022155999.1	6.4e-21	67.53	uncharacterized protein LOC111022974 [Momordica charantia]	[more]
XP_022158197.1	6.4e-21	66.23	uncharacterized protein LOC111024734 [Momordica charantia]	[more]
KAA0044955.1	1.8e-20	64.94	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0048404.1	1.8e-20	64.94	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Tan0012435 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DFZ2	8.1e-22	70.67	uncharacterized protein LOC111020095 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A6J1DWL0	3.1e-21	66.23	uncharacterized protein LOC111024734 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1DRZ2	3.1e-21	67.53	uncharacterized protein LOC111022974 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A5A7SMH8	8.9e-21	64.94	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5D3CPJ6	8.9e-21	64.94	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004...	[more]

BLAST of Tan0012435 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35317:SF8	POLYPROTEIN-LIKE PROTEIN	coord: 1..76
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 1..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0012435.1	Tan0012435.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding