Tan0012397 (gene) Snake gourd v1

Overview


Name	Tan0012397
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Reverse transcriptase
Location	LG07: 43967835 .. 43968233 (+)
RNA-Seq Expression	Tan0012397
Synteny	Tan0012397

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCGAGGTGGCAAACGAGGCAGGCAAGTGGAGACTGGAACTCAAGAAGCTACTGGTGATAGAGGAAGAGAGGTATCAGAGGGAGAGTCTAGTCATCCTCAGCAAGAGGTGAATATGGAGGAACAGATCTTTACGAGGATAACTCAAAGATTAGCTGAAAGTGTTGGATCAGCACAAGCAGATCCAGAAATGAAGTATGGCATTGAAAGACTGAAAGCCTTAGGTGCAACAACATTTGAAGGCACGACAGATCCCGCTGATGCAGAGGTTTGGTTAAATATGATTGAGAAGTGTTTTAGGGTCATGCGATGCCCTGAAGATAGGAAGGTCGATTTAGCAGCATTCTTACTCCAGAAAGGAGCAGATGATTGGTGGAATATAAGCGAGAGCGAGTAA

mRNA sequence

ATGGCTCGAGGTGGCAAACGAGGCAGGCAAGTGGAGACTGGAACTCAAGAAGCTACTGGTGATAGAGGAAGAGAGGTATCAGAGGGAGAGTCTAGTCATCCTCAGCAAGAGGTGAATATGGAGGAACAGATCTTTACGAGGATAACTCAAAGATTAGCTGAAAGTGTTGGATCAGCACAAGCAGATCCAGAAATGAAGTATGGCATTGAAAGACTGAAAGCCTTAGGTGCAACAACATTTGAAGGCACGACAGATCCCGCTGATGCAGAGGTTTGGTTAAATATGATTGAGAAGTGTTTTAGGGTCATGCGATGCCCTGAAGATAGGAAGGTCGATTTAGCAGCATTCTTACTCCAGAAAGGAGCAGATGATTGGTGGAATATAAGCGAGAGCGAGTAA

Coding sequence (CDS)

ATGGCTCGAGGTGGCAAACGAGGCAGGCAAGTGGAGACTGGAACTCAAGAAGCTACTGGTGATAGAGGAAGAGAGGTATCAGAGGGAGAGTCTAGTCATCCTCAGCAAGAGGTGAATATGGAGGAACAGATCTTTACGAGGATAACTCAAAGATTAGCTGAAAGTGTTGGATCAGCACAAGCAGATCCAGAAATGAAGTATGGCATTGAAAGACTGAAAGCCTTAGGTGCAACAACATTTGAAGGCACGACAGATCCCGCTGATGCAGAGGTTTGGTTAAATATGATTGAGAAGTGTTTTAGGGTCATGCGATGCCCTGAAGATAGGAAGGTCGATTTAGCAGCATTCTTACTCCAGAAAGGAGCAGATGATTGGTGGAATATAAGCGAGAGCGAGTAA

Protein sequence

MARGGKRGRQVETGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEMKYGIERLKALGATTFEGTTDPADAEVWLNMIEKCFRVMRCPEDRKVDLAAFLLQKGADDWWNISESE

Homology

[Close]

BLAST of Tan0012397 vs. NCBI nr
Match: XP_038896416.1 (uncharacterized protein LOC120084680 [Benincasa hispida])

HSP 1 Score: 150.6 bits (379), Expect = 9.5e-33
Identity = 67/92 (72.83%), Postives = 79/92 (85.87%), Query Frame = 0


Query: 40  MEEQIFTRITQRLAESVGSAQADPEMKYGIERLKALGATTFEGTTDPADAEVWLNMIEKC 99
           ME+++F RITQRLA SVGS Q DPE K+GIERLKALGATTF+GTTDP DAE+WL +IEKC
Sbjct: 1   MEDRVFDRITQRLAASVGSIQNDPEKKFGIERLKALGATTFDGTTDPLDAEIWLGLIEKC 60

Query: 100 FRVMRCPEDRKVDLAAFLLQKGADDWWNISES 132
           F+VMRCPED KV+LA FLLQKG + WW + E+
Sbjct: 61  FKVMRCPEDCKVELATFLLQKGVEKWWKLVET 92

[Close]

BLAST of Tan0012397 vs. NCBI nr
Match: KAA0035225.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21839.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 149.1 bits (375), Expect = 2.8e-32
Identity = 79/136 (58.09%), Postives = 91/136 (66.91%), Query Frame = 0


Query: 1   MARGGKRGR-QVETGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSA 60
           M RG  R     +T         G   S+ ESS P  E NMEEQ+  R+ QRL   + SA
Sbjct: 20  MPRGRPRKHPDAKTSNAAREAAMGSGESDAESSRPHVEGNMEEQLLDRLAQRLISGIRSA 79

Query: 61  QADPEMKYGIERLKALGATTFEGTTDPADAEVWLNMIEKCFRVMRCPEDRKVDLAAFLLQ 120
           Q+DPE KYGIERLKALGATTF GTT+PADAE WL +IEKCFRV RCPEDRKV+LA+FLLQ
Sbjct: 80  QSDPEKKYGIERLKALGATTFVGTTNPADAEAWLTLIEKCFRVTRCPEDRKVELASFLLQ 139

Query: 121 KG----ADDWWNISES 132
            G     +DWW + ES
Sbjct: 140 NGGGAKGEDWWRMEES 155

[Close]

BLAST of Tan0012397 vs. NCBI nr
Match: KAA0026280.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21476.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 146.4 bits (368), Expect = 1.8e-31
Identity = 70/109 (64.22%), Postives = 83/109 (76.15%), Query Frame = 0


Query: 23  GREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEMKYGIERLKALGATTFEG 82
           G   S+ ESS P  E N+EEQ+  R+ QRL   +  AQ+D E KYGIERLKALGATTF G
Sbjct: 24  GSGESDAESSRPHVEGNVEEQLLDRLAQRLILGIRLAQSDSEKKYGIERLKALGATTFVG 83

Query: 83  TTDPADAEVWLNMIEKCFRVMRCPEDRKVDLAAFLLQKGADDWWNISES 132
           TT+P DAE WL +IEKCF+V RC EDRKV+LAAFLLQ GA+DWW++ ES
Sbjct: 84  TTNPVDAEEWLTLIEKCFKVTRCSEDRKVELAAFLLQNGAEDWWHMEES 132

[Close]

BLAST of Tan0012397 vs. NCBI nr
Match: KAA0036813.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 141.7 bits (356), Expect = 4.4e-30
Identity = 74/132 (56.06%), Postives = 86/132 (65.15%), Query Frame = 0


Query: 1   MARGGKRGR-QVETGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSA 60
           M RG  R     E          G   S+ ESS P+ E N+EEQ+  R+ QRL   + SA
Sbjct: 1   MPRGKPRKHPDAEASNAAKEAAMGSGESDAESSRPRVEENVEEQLLDRLAQRLVSGIRSA 60

Query: 61  QADPEMKYGIERLKALGATTFEGTTDPADAEVWLNMIEKCFRVMRCPEDRKVDLAAFLLQ 120
           Q+DPE KYG ERLKALGATTF GTT+P D E WL +IEKCFRV R  EDRKV+LAAFLLQ
Sbjct: 61  QSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRYLEDRKVELAAFLLQ 120

Query: 121 KGADDWWNISES 132
             A+DWW + ES
Sbjct: 121 NDAEDWWRMEES 132

[Close]

BLAST of Tan0012397 vs. NCBI nr
Match: TYJ95881.1 (retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa])

HSP 1 Score: 141.7 bits (356), Expect = 4.4e-30
Identity = 74/132 (56.06%), Postives = 86/132 (65.15%), Query Frame = 0


Query: 1   MARGGKRGR-QVETGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSA 60
           M RG  R     E          G   S+ ESS P+ E N+EEQ+  R+ QRL   + SA
Sbjct: 1   MPRGKPRKHPDAEASNAAKEAAMGSGESDAESSRPRVEENVEEQLLDRLAQRLVSGIRSA 60

Query: 61  QADPEMKYGIERLKALGATTFEGTTDPADAEVWLNMIEKCFRVMRCPEDRKVDLAAFLLQ 120
           Q+DPE KYG ERLKALGATTF GTT+P D E WL +IEKCFRV R  EDRKV+LAAFLLQ
Sbjct: 61  QSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRYLEDRKVELAAFLLQ 120

Query: 121 KGADDWWNISES 132
             A+DWW + ES
Sbjct: 121 NDAEDWWRMEES 132

[Close]

BLAST of Tan0012397 vs. ExPASy TrEMBL
Match: A0A5D3DES5 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold991G00660 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.3e-32
Identity = 79/136 (58.09%), Postives = 91/136 (66.91%), Query Frame = 0


Query: 1   MARGGKRGR-QVETGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSA 60
           M RG  R     +T         G   S+ ESS P  E NMEEQ+  R+ QRL   + SA
Sbjct: 20  MPRGRPRKHPDAKTSNAAREAAMGSGESDAESSRPHVEGNMEEQLLDRLAQRLISGIRSA 79

Query: 61  QADPEMKYGIERLKALGATTFEGTTDPADAEVWLNMIEKCFRVMRCPEDRKVDLAAFLLQ 120
           Q+DPE KYGIERLKALGATTF GTT+PADAE WL +IEKCFRV RCPEDRKV+LA+FLLQ
Sbjct: 80  QSDPEKKYGIERLKALGATTFVGTTNPADAEAWLTLIEKCFRVTRCPEDRKVELASFLLQ 139

Query: 121 KG----ADDWWNISES 132
            G     +DWW + ES
Sbjct: 140 NGGGAKGEDWWRMEES 155

[Close]

BLAST of Tan0012397 vs. ExPASy TrEMBL
Match: A0A5A7SJ99 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold305G00100 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 8.7e-32
Identity = 70/109 (64.22%), Postives = 83/109 (76.15%), Query Frame = 0


Query: 23  GREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEMKYGIERLKALGATTFEG 82
           G   S+ ESS P  E N+EEQ+  R+ QRL   +  AQ+D E KYGIERLKALGATTF G
Sbjct: 24  GSGESDAESSRPHVEGNVEEQLLDRLAQRLILGIRLAQSDSEKKYGIERLKALGATTFVG 83

Query: 83  TTDPADAEVWLNMIEKCFRVMRCPEDRKVDLAAFLLQKGADDWWNISES 132
           TT+P DAE WL +IEKCF+V RC EDRKV+LAAFLLQ GA+DWW++ ES
Sbjct: 84  TTNPVDAEEWLTLIEKCFKVTRCSEDRKVELAAFLLQNGAEDWWHMEES 132

[Close]

BLAST of Tan0012397 vs. ExPASy TrEMBL
Match: A0A5D3BB91 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001760 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 2.1e-30
Identity = 74/132 (56.06%), Postives = 86/132 (65.15%), Query Frame = 0


Query: 1   MARGGKRGR-QVETGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSA 60
           M RG  R     E          G   S+ ESS P+ E N+EEQ+  R+ QRL   + SA
Sbjct: 1   MPRGKPRKHPDAEASNAAKEAAMGSGESDAESSRPRVEENVEEQLLDRLAQRLVSGIRSA 60

Query: 61  QADPEMKYGIERLKALGATTFEGTTDPADAEVWLNMIEKCFRVMRCPEDRKVDLAAFLLQ 120
           Q+DPE KYG ERLKALGATTF GTT+P D E WL +IEKCFRV R  EDRKV+LAAFLLQ
Sbjct: 61  QSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRYLEDRKVELAAFLLQ 120

Query: 121 KGADDWWNISES 132
             A+DWW + ES
Sbjct: 121 NDAEDWWRMEES 132

[Close]

BLAST of Tan0012397 vs. ExPASy TrEMBL
Match: A0A5A7T1M0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G001070 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 2.1e-30
Identity = 74/132 (56.06%), Postives = 86/132 (65.15%), Query Frame = 0


Query: 1   MARGGKRGR-QVETGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSA 60
           M RG  R     E          G   S+ ESS P+ E N+EEQ+  R+ QRL   + SA
Sbjct: 1   MPRGKPRKHPDAEASNAAKEAAMGSGESDAESSRPRVEENVEEQLLDRLAQRLVSGIRSA 60

Query: 61  QADPEMKYGIERLKALGATTFEGTTDPADAEVWLNMIEKCFRVMRCPEDRKVDLAAFLLQ 120
           Q+DPE KYG ERLKALGATTF GTT+P D E WL +IEKCFRV R  EDRKV+LAAFLLQ
Sbjct: 61  QSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRYLEDRKVELAAFLLQ 120

Query: 121 KGADDWWNISES 132
             A+DWW + ES
Sbjct: 121 NDAEDWWRMEES 132

[Close]

BLAST of Tan0012397 vs. ExPASy TrEMBL
Match: A0A5A7UZM6 (Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00750 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 5.8e-28
Identity = 59/74 (79.73%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 58  SAQADPEMKYGIERLKALGATTFEGTTDPADAEVWLNMIEKCFRVMRCPEDRKVDLAAFL 117
           S Q+DPE KYGIERLKALGATTF GTT+PADAE WL +IEKCFRV RCPEDRKV+LAAFL
Sbjct: 47  STQSDPEKKYGIERLKALGATTFAGTTNPADAEAWLTLIEKCFRVTRCPEDRKVELAAFL 106

Query: 118 LQKGADDWWNISES 132
           LQ GA+DWW + ES
Sbjct: 107 LQNGAEDWWRMEES 120

The following BLAST results are available for this feature:

BLAST of Tan0012397 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0012397 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896416.1	9.5e-33	72.83	uncharacterized protein LOC120084680 [Benincasa hispida]	[more]
KAA0035225.1	2.8e-32	58.09	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21839.1 D...	[more]
KAA0026280.1	1.8e-31	64.22	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21476.1 D...	[more]
KAA0036813.1	4.4e-30	56.06	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
TYJ95881.1	4.4e-30	56.06	retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]	[more]

BLAST of Tan0012397 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DES5	1.3e-32	58.09	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7SJ99	8.7e-32	64.22	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3BB91	2.1e-30	56.06	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7T1M0	2.1e-30	56.06	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20...	[more]
A0A5A7UZM6	5.8e-28	79.73	Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]

BLAST of Tan0012397 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..40

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0012397.1	Tan0012397.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding