Tan0012371 (gene) Snake gourd v1

Overview


Name	Tan0012371
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Zinc knuckle CX2CX4HX4C
Location	LG01: 13576063 .. 13576728 (-)
RNA-Seq Expression	Tan0012371
Synteny	Tan0012371

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACTGGATATCACGGACATGGGCTAAGGCGATTGGGAACTCCATAGGGACTTTTATGGATGTTGAAACGGATGAAAATGGTGAATGTGAGGGAGTTTCTCTGAGGATAAAAGTCAAGTTTGATATACAAAAACCCTTATGCAGGGGAACCAACATAAAGGTAGGATCCATGGCTGAGGAAGTCTGGTACCCGATAACTTACGAGAAGCTGTCAGAATTCTATTATCGGTACGTCAGACTGGGGCACGTGTATAAGGATTGTGAGGAAAAACAAGACTAGCCAGAGGGCGAAGCTCGGTTTGGAGAATGGCAACGAGAAATAATAGACCAAAAGGACGATCAGGGGTACGGAGAAAGGATCAATTTTCTAAGGGAGTAAGTGTTAGGGGCAGGGGCGATCTAACTTTCAGTACAGTAAAGGCGTTTACTCAACTCAAGCAAGGAAGTCAGAACGAAAAAGGAAAAGGAAAAGTTACACAGGGAGAAGAAGTGTGAAAGTATCCATAATCATCAAAACAATAATACTGAAAAAGACTGTCACATCCACTTATCTGGTCAGGGTACGGGGAATATGAGTGTTGAGGAGGCCATGTTTGTTACCGTTGGAAGGAAAACAGAGGCTACGAAGGATAAAAAATGGGAAAAGGAACTAAAGTGGGAATGA

mRNA sequence

ATGAACTGGATATCACGGACATGGGCTAAGGCGATTGGGAACTCCATAGGGACTTTTATGGATGTTGAAACGGATGAAAATGGTGAATGTGAGGGAGTTTCTCTGAGGATAAAAGTCAAGTTTGATATACAAAAACCCTTATGCAGGGGAACCAACATAAAGGTAGGATCCATGGCTGAGGAAGTCTGTGTTGAGGAGGCCATGTTTGTTACCGTTGGAAGGAAAACAGAGGCTACGAAGGATAAAAAATGGGAAAAGGAACTAAAGTGGGAATGA

Coding sequence (CDS)

ATGAACTGGATATCACGGACATGGGCTAAGGCGATTGGGAACTCCATAGGGACTTTTATGGATGTTGAAACGGATGAAAATGGTGAATGTGAGGGAGTTTCTCTGAGGATAAAAGTCAAGTTTGATATACAAAAACCCTTATGCAGGGGAACCAACATAAAGGTAGGATCCATGGCTGAGGAAGTCTGTGTTGAGGAGGCCATGTTTGTTACCGTTGGAAGGAAAACAGAGGCTACGAAGGATAAAAAATGGGAAAAGGAACTAAAGTGGGAATGA

Protein sequence

MNWISRTWAKAIGNSIGTFMDVETDENGECEGVSLRIKVKFDIQKPLCRGTNIKVGSMAEEVCVEEAMFVTVGRKTEATKDKKWEKELKWE

Homology

[Close]

BLAST of Tan0012371 vs. NCBI nr
Match: XP_022156185.1 (uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncharacterized protein LOC111023135 [Momordica charantia])

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-05
Identity = 27/55 (49.09%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 1   MNWISRTWAKAIGNSIGTFMDVETDENGECEGVSLRIKVKFDIQKPLCRGTNIKV 56
           M+W+++T A  +GN+IG F+DV+ +E G   G SLRI+V  DI KPL RG  I +
Sbjct: 137 MSWLNKTMAIRLGNAIGNFVDVDCNEKGFSWGASLRIRVLIDITKPLRRGIKINI 191

[Close]

BLAST of Tan0012371 vs. NCBI nr
Match: KAE8782072.1 (hypothetical protein D1007_44590 [Hordeum vulgare])

HSP 1 Score: 59.7 bits (143), Expect = 1.5e-05
Identity = 29/53 (54.72%), Postives = 34/53 (64.15%), Query Frame = 0


Query: 4   ISRTWAKAIGNSIGTFMDVETDENGECEGVSLRIKVKFDIQKPLCRGTNIKVG 57
           + R   + IG  +G F+DVE  E+G  EG SLRIKVK DI KPL RGT I  G
Sbjct: 106 MDRAEREMIGEKVGAFVDVEVGEDGMAEGESLRIKVKLDITKPLMRGTVIHTG 158

[Close]

BLAST of Tan0012371 vs. NCBI nr
Match: PON92154.1 (Zinc knuckle CX2CX4HX4C [Trema orientale])

HSP 1 Score: 59.3 bits (142), Expect = 2.0e-05
Identity = 26/62 (41.94%), Postives = 39/62 (62.90%), Query Frame = 0


Query: 4  ISRTWAKAIGNSIGTFMDVETDENGECEGVSLRIKVKFDIQKPLCRGTNIKVGSMAEEVC 63
          +S+  AK +GN  G F++VE D+NG C G  L ++V  DI KPL RG  +++GS    + 
Sbjct: 9  MSKAVAKLLGNQAGRFVEVEKDDNGSCLGRFLNVRVIVDINKPLRRGAKVRIGSGGHTIW 68

Query: 64 VE 66
          V+
Sbjct: 69 VD 70

[Close]

BLAST of Tan0012371 vs. NCBI nr
Match: BAS74010.1 (Os01g0714300 [Oryza sativa Japonica Group])

HSP 1 Score: 57.8 bits (138), Expect = 5.8e-05
Identity = 24/53 (45.28%), Postives = 37/53 (69.81%), Query Frame = 0


Query: 4  ISRTWAKAIGNSIGTFMDVETDENGECEGVSLRIKVKFDIQKPLCRGTNIKVG 57
          ++R   KAIG+ +GTF++++ DEN    G  LRIK++ DI+KPL RG  + +G
Sbjct: 8  MNRCTGKAIGDEVGTFLEMDMDENCTAVGRFLRIKIRLDIRKPLMRGVTVMIG 60

[Close]

BLAST of Tan0012371 vs. NCBI nr
Match: KAE8767168.1 (putative reverse transcriptase [Hordeum vulgare])

HSP 1 Score: 56.2 bits (134), Expect = 1.7e-04
Identity = 27/53 (50.94%), Postives = 34/53 (64.15%), Query Frame = 0


Query: 4   ISRTWAKAIGNSIGTFMDVETDENGECEGVSLRIKVKFDIQKPLCRGTNIKVG 57
           + R   + IG  +G F+DVE   +G   G SLRIKVK DI KPL RGT I++G
Sbjct: 65  MDRATREMIGEKVGDFVDVEVGADGLAVGESLRIKVKLDITKPLMRGTVIQIG 117

[Close]

BLAST of Tan0012371 vs. ExPASy TrEMBL
Match: A0A6J1DU55 (uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023135 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.6e-06
Identity = 27/55 (49.09%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 1   MNWISRTWAKAIGNSIGTFMDVETDENGECEGVSLRIKVKFDIQKPLCRGTNIKV 56
           M+W+++T A  +GN+IG F+DV+ +E G   G SLRI+V  DI KPL RG  I +
Sbjct: 137 MSWLNKTMAIRLGNAIGNFVDVDCNEKGFSWGASLRIRVLIDITKPLRRGIKINI 191

[Close]

BLAST of Tan0012371 vs. ExPASy TrEMBL
Match: A0A2P5F2Z2 (Zinc knuckle CX2CX4HX4C OS=Trema orientale OX=63057 GN=TorRG33x02_119730 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 9.6e-06
Identity = 26/62 (41.94%), Postives = 39/62 (62.90%), Query Frame = 0


Query: 4  ISRTWAKAIGNSIGTFMDVETDENGECEGVSLRIKVKFDIQKPLCRGTNIKVGSMAEEVC 63
          +S+  AK +GN  G F++VE D+NG C G  L ++V  DI KPL RG  +++GS    + 
Sbjct: 9  MSKAVAKLLGNQAGRFVEVEKDDNGSCLGRFLNVRVIVDINKPLRRGAKVRIGSGGHTIW 68

Query: 64 VE 66
          V+
Sbjct: 69 VD 70

[Close]

BLAST of Tan0012371 vs. ExPASy TrEMBL
Match: A0A803Q6Y1 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.8e-05
Identity = 30/61 (49.18%), Postives = 40/61 (65.57%), Query Frame = 0


Query: 5   SRTWAKAIGNSIGTFMDVETDENGECEGVSLRIKVKFDIQKPLCRGTNIKVGSMAEEVCV 64
           SR  AKA+GN IG FM+V TD   E  G  LRI+VK D+ KPL RG NI++  + ++  V
Sbjct: 132 SRGLAKALGNIIGEFMEVFTDSLNEGWGPFLRIRVKIDVTKPLRRGRNIRLQQIRDKFWV 191

Query: 65  E 66
           +
Sbjct: 192 D 192

[Close]

BLAST of Tan0012371 vs. ExPASy TrEMBL
Match: A0A0P0V7D8 (Os01g0714300 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0714300 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.8e-05
Identity = 24/53 (45.28%), Postives = 37/53 (69.81%), Query Frame = 0


Query: 4  ISRTWAKAIGNSIGTFMDVETDENGECEGVSLRIKVKFDIQKPLCRGTNIKVG 57
          ++R   KAIG+ +GTF++++ DEN    G  LRIK++ DI+KPL RG  + +G
Sbjct: 8  MNRCTGKAIGDEVGTFLEMDMDENCTAVGRFLRIKIRLDIRKPLMRGVTVMIG 60

[Close]

BLAST of Tan0012371 vs. ExPASy TrEMBL
Match: A0A2P5C5M3 (Zinc knuckle CX2CX4HX4C OS=Trema orientale OX=63057 GN=TorRG33x02_296730 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.1e-04
Identity = 26/54 (48.15%), Postives = 37/54 (68.52%), Query Frame = 0


Query: 12 IGNSIGTFMDVETDENGECEGVSLRIKVKFDIQKPLCRGTNIKVGSMAEEVCVE 66
          IG+ IG   +VETDENG+C G  +RI+V+ DI  PL RG+ + +G+  E V V+
Sbjct: 31 IGHRIGVCQEVETDENGKCLGRFVRIRVQLDISSPLRRGSRVMLGNDTEIVLVD 84

The following BLAST results are available for this feature:

BLAST of Tan0012371 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0012371 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156185.1	1.2e-05	49.09	uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncha...	[more]
KAE8782072.1	1.5e-05	54.72	hypothetical protein D1007_44590 [Hordeum vulgare]	[more]
PON92154.1	2.0e-05	41.94	Zinc knuckle CX2CX4HX4C [Trema orientale]	[more]
BAS74010.1	5.8e-05	45.28	Os01g0714300 [Oryza sativa Japonica Group]	[more]
KAE8767168.1	1.7e-04	50.94	putative reverse transcriptase [Hordeum vulgare]	[more]

BLAST of Tan0012371 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DU55	5.6e-06	49.09	uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A2P5F2Z2	9.6e-06	41.94	Zinc knuckle CX2CX4HX4C OS=Trema orientale OX=63057 GN=TorRG33x02_119730 PE=4 SV...	[more]
A0A803Q6Y1	2.8e-05	49.18	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A0P0V7D8	2.8e-05	45.28	Os01g0714300 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0714300 PE...	[more]
A0A2P5C5M3	1.1e-04	48.15	Zinc knuckle CX2CX4HX4C OS=Trema orientale OX=63057 GN=TorRG33x02_296730 PE=4 SV...	[more]

BLAST of Tan0012371 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0012371.1	Tan0012371.1	mRNA