Tan0012198 (gene) Snake gourd v1

Overview


Name	Tan0012198
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Ribonuclease H protein
Location	LG04: 17746425 .. 17748462 (+)
RNA-Seq Expression	Tan0012198
Synteny	Tan0012198

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGACCTGGAGAAACTTCCTGAAGAAGAGGACCTTTACTGGCGTCAAAGGTCGCACGAAGACTAGGTAAAATGGGGAGACCGAAATACCAAATGGTTCCACATTAGGGCATCCGCGAGGAAAAAACAGAACCACATTAAAGGTCTTTTCAACTCCTCGGGAGATTGGGTTACAAATGAGAGTGAGATAGGACAGTTGGCTACCGCTTACTTTGAAAATTTGTTTACTTCAAACCCGCAAGCACTTGAAGCAACTGAAAAAGTTATTGACATGATATCACCAACAAATGACAAGGAGACAAATTCTTCACTTTTAATGGATTTTACTAGGGATGAAATTGAGGGTGTCCTAAAGAGTATGAACCCTACTAAAGCTCCGGGGTCGGATGGAGTCCATGCGGGTTTCTACAAGGAATATTGGAGTATAGTCGGAGACAATATTACAGATCTGTCTAAGCTGTTTGAATGAGAATAGTGACCTACGAAAGTTGAACCACACTTGTTTAGTCCTAATCCCCAAAACTCAACATCCGAGTAAGATGGAGGATTTTCGACCAATTAGTCTGTGCAATGTGGTTTATAAGATAATCTCCAAATGTCTGGCTAATAGGTTAAAAAATGTCTTAAACCAAGTTATCTCCTTAGAGCAATCAACTTTCATCTCCGATAGGTTAATTTCTGATAATGCTCTTATTGGTTTTGAATGTTTGCACGCAATCAGAAGTAAACGCAAAGGAAAGATGGGATCAATAGCTATGAAACTCGACATGTGTAAGGCTTATGACAGGGTGGAATGGAACTATCTGCACAGGATAATGCTTCGTATGGGTTTTGATATGAACTGTGTTGAAACTGTCAGTTTCTCAATCTTGTTGAACGGTAGACCACAAGAGCCCTCTTACCCAAAAAGAGGTATGCGGCAGGGAGACCCTCTTTCTCCTTATCTATTTATACTGTGTGTTGAAGGTTTTTGTGCATTGCTTTATAGAGAACAAAGCCTTAAGAATTTCTGTGGATTAAAGATTAATTGTTTTTGTCCTATAATTTCACACATCTTCTATGCAGATGATAACATTATCTTCTTTAGGGCACACAATCAAGACATCCAAACAATCAAAGGCGTGTTGGACTGTTATGAACAGGCTTCGGGGCAGACAGTTAACTTTGAAAAATCAACCTTTGTGGTTAGTAAAAATACGAAGGCAAACATGGTAGAATTGATAAAGAGCACCTTCAAGGTTGATTGTAGAGATTCTTTGGGTTGTTATTTAGGACTCCCGTCTCAGACCTCCAAGCATAAGTCTCAAGTCTTTAGAACAATCAAAGATCGCATGTGGAAGGTGCTCCAGAGTTGGAAAGGTAAGTTTTTCTCTTATGGAGGGAGAGAGGCCCTTATTAAAGCAGTGGCTCAAGCCATTCCGGTGTATACGACGAGTTGTTTCAAGCTTCCTAAGAGTCTCTGTGCTGAACTGAATTCGATTTGCGCCAAATTTTGGTGGGGCGCTAACGAAAGAAGGCGAAAAATTCATTGGCAAAGCTAGACGAGACTGTGTATTCCCAAGGAGGCAAGGGGCATGGGTTTCAGAGACATACATTTGTTCAACCAGGCAATGTTGGCAAAGCAGGGCTGGCGTCTTCTTCGAAAGCCCGATAGTATTCTTTATCGACTGCTTAGGGGAAGATATTTTAAAACAGGAAATTTTCTAAAAGCAACTCTCGGTTCTAATCCATCTTTTACATGGCGTAGCATCCTTTGGGGTCAGGATTTGTTTAGAGAAGAGTACAGATGGAAGATTGGAAATGGATGTCAGATCAGTATATTTAATGATCCATGGCTCACGGTGGAAGGTCGGCAGCACCCGATGATGGTGAGTCCCGAACTGGCTCAAAGCACGATTCGTAGTCTGTTAAAAGAAGACGGGGAGTGGGACGTTGATAAGATCCGAAGGTGTTTCCAGGAAGATGATGTTGGTAATATTCTCCAAATCCCACGTTACGGGATACATAATAATGACGAAATTGTTTTGGAAGTATAA

mRNA sequence

ATGGCGGACCTGGAGAAACTTCCTGAAGAAGAGGACCTTTACTGGCGTCAAAGCATCCTTTGGGGTCAGGATTTGTTTAGAGAAGAGTACAGATGGAAGATTGGAAATGGATGTCAGATCAGTATATTTAATGATCCATGGCTCACGGTGGAAGGTCGGCAGCACCCGATGATGGTGAGTCCCGAACTGGCTCAAAGCACGATTCGTAGTCTGTTAAAAGAAGACGGGGAGTGGGACGTTGATAAGATCCGAAGGTGTTTCCAGGAAGATGATGTTGGTAATATTCTCCAAATCCCACGTTACGGGATACATAATAATGACGAAATTGTTTTGGAAGTATAA

Coding sequence (CDS)

ATGGCGGACCTGGAGAAACTTCCTGAAGAAGAGGACCTTTACTGGCGTCAAAGCATCCTTTGGGGTCAGGATTTGTTTAGAGAAGAGTACAGATGGAAGATTGGAAATGGATGTCAGATCAGTATATTTAATGATCCATGGCTCACGGTGGAAGGTCGGCAGCACCCGATGATGGTGAGTCCCGAACTGGCTCAAAGCACGATTCGTAGTCTGTTAAAAGAAGACGGGGAGTGGGACGTTGATAAGATCCGAAGGTGTTTCCAGGAAGATGATGTTGGTAATATTCTCCAAATCCCACGTTACGGGATACATAATAATGACGAAATTGTTTTGGAAGTATAA

Protein sequence

MADLEKLPEEEDLYWRQSILWGQDLFREEYRWKIGNGCQISIFNDPWLTVEGRQHPMMVSPELAQSTIRSLLKEDGEWDVDKIRRCFQEDDVGNILQIPRYGIHNNDEIVLEV

Homology

[Close]

BLAST of Tan0012198 vs. NCBI nr
Match: XP_022155286.1 (uncharacterized protein LOC111022423 [Momordica charantia])

HSP 1 Score: 83.2 bits (204), Expect = 1.6e-12
Identity = 40/105 (38.10%), Postives = 58/105 (55.24%), Query Frame = 0


Query: 6   KLPEEEDLYWRQSILWGQDLFREEYRWKIGNGCQISIFNDPWLTVEGRQHPMMVSPELAQ 65
           KL       WR SILWG+DLF++ YRWK+GNG  I++ +DPWL  +G   P+     +  
Sbjct: 564 KLGARPSYAWR-SILWGRDLFKKGYRWKVGNGFSINLSSDPWLPRDGNFSPVFTHIHVRN 623

Query: 66  STIRSLLKEDGEWDVDKIRRCFQEDDVGNILQIPRYGIHNNDEIV 111
            ++  L++  G WD  K+R  F   +   ILQ P      +DEI+
Sbjct: 624 FSVAWLMEGRGRWDEIKVRESFIVSEADIILQTPLPSQDKDDEII 667

[Close]

BLAST of Tan0012198 vs. NCBI nr
Match: XP_024950112.1 (uncharacterized protein LOC112496847 [Citrus sinensis])

HSP 1 Score: 73.6 bits (179), Expect = 1.3e-09
Identity = 35/96 (36.46%), Postives = 54/96 (56.25%), Query Frame = 0


Query: 15   WRQSILWGQDLFREEYRWKIGNGCQISIFNDPWLTVEGRQHPMMVSPELAQSTIRSLLKE 74
            WR SI+WG+ + ++  RW+IGNG +I+IF+D WL       P+        S +  L+K 
Sbjct: 943  WR-SIMWGRQVIKKGMRWRIGNGKKIAIFSDNWLPRPETFRPIFPLSLPVSSVVADLIKA 1002

Query: 75   DGEWDVDKIRRCFQEDDVGNILQIPRYGIHNNDEIV 111
            D +WD  K+R+ F + D   IL+IP       DE++
Sbjct: 1003 DNQWDEIKLRQHFLDVDTAEILKIPLPAEKAEDEVL 1037

[Close]

BLAST of Tan0012198 vs. NCBI nr
Match: XP_030502376.1 (uncharacterized protein LOC115717528 [Cannabis sativa])

HSP 1 Score: 72.0 bits (175), Expect = 3.7e-09
Identity = 34/109 (31.19%), Postives = 56/109 (51.38%), Query Frame = 0


Query: 4   LEKLPEEEDLYWRQSILWGQDLFREEYRWKIGNGCQISIFNDPWLTVEGRQHPMMVSPEL 63
           LE +P     +  +SILWG+DL      WK+ NG  I    D WL     +     +P  
Sbjct: 521 LEAVPGHSPSFSWRSILWGRDLMASGLIWKVVNGYGIQTLGDHWLPNNRFKFFTSNNPPP 580

Query: 64  AQSTIRSLLKEDGEWDVDKIRRCFQEDDVGNILQIPRYGIHNNDEIVLE 113
           +  ++   + + G WDV K++ CF E  V +IL +P +G + +D+++ E
Sbjct: 581 SSHSLSFFITDSGTWDVGKLQSCFDESMVHDILAVPVFGSYGHDKLIWE 629

[Close]

BLAST of Tan0012198 vs. NCBI nr
Match: XP_030494695.1 (uncharacterized protein LOC115710475 [Cannabis sativa])

HSP 1 Score: 71.6 bits (174), Expect = 4.8e-09
Identity = 35/98 (35.71%), Postives = 53/98 (54.08%), Query Frame = 0


Query: 14  YWRQSILWGQDLFREEYRWKIGNGCQISIFNDPWLTVEGRQHPMMVSPELAQ-STIRSLL 73
           Y   S+LWG+DL      WK+GNGC I  F DPW+   G + P + S +L     +   +
Sbjct: 444 YTWSSLLWGRDLLIRGLLWKVGNGCSIRTFQDPWIL--GIKFPCLRSNDLPPVDKVSFFI 503

Query: 74  KEDGEWDVDKIRRCFQEDDVGNILQIPRYGIHNNDEIV 111
             +G WD  K+ + F +  V +IL++P  G+H  D I+
Sbjct: 504 DNNGFWDRYKLHQYFDDYSVLSILKVPIGGLHKADSII 539

[Close]

BLAST of Tan0012198 vs. NCBI nr
Match: PKA49974.1 (Putative ribonuclease H protein [Apostasia shenzhenica])

HSP 1 Score: 71.2 bits (173), Expect = 6.3e-09
Identity = 38/97 (39.18%), Postives = 52/97 (53.61%), Query Frame = 0


Query: 15  WRQSILWGQDLFREEYRWKIGNGCQISIFNDPWLTVE-GRQHPMMVSPELAQSTIRSLLK 74
           WR SILWG+DL +   RW+IGNG  + +F DPWL      Q     +P LA + I  LL 
Sbjct: 332 WR-SILWGRDLLKLGLRWRIGNGNSVRVFGDPWLPRPISFQAITSPNPNLAATRIVELLT 391

Query: 75  EDGEWDVDKIRRCFQEDDVGNILQIPRYGIHNNDEIV 111
           EDG W+ +KI       D   IL++P      +D ++
Sbjct: 392 EDGSWNWEKINSILWSIDYHLILEMPPCSTKFDDALI 427

[Close]

BLAST of Tan0012198 vs. ExPASy TrEMBL
Match: A0A6J1DRA0 (uncharacterized protein LOC111022423 OS=Momordica charantia OX=3673 GN=LOC111022423 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 7.7e-13
Identity = 40/105 (38.10%), Postives = 58/105 (55.24%), Query Frame = 0


Query: 6   KLPEEEDLYWRQSILWGQDLFREEYRWKIGNGCQISIFNDPWLTVEGRQHPMMVSPELAQ 65
           KL       WR SILWG+DLF++ YRWK+GNG  I++ +DPWL  +G   P+     +  
Sbjct: 564 KLGARPSYAWR-SILWGRDLFKKGYRWKVGNGFSINLSSDPWLPRDGNFSPVFTHIHVRN 623

Query: 66  STIRSLLKEDGEWDVDKIRRCFQEDDVGNILQIPRYGIHNNDEIV 111
            ++  L++  G WD  K+R  F   +   ILQ P      +DEI+
Sbjct: 624 FSVAWLMEGRGRWDEIKVRESFIVSEADIILQTPLPSQDKDDEII 667

[Close]

BLAST of Tan0012198 vs. ExPASy TrEMBL
Match: A0A803QDR8 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.5e-11
Identity = 39/111 (35.14%), Postives = 56/111 (50.45%), Query Frame = 0


Query: 6    KLPEEEDLYWRQSILWGQDLFREEYRWKIGNGCQISIFNDPWLTVEGRQHPMMVSPELAQ 65
            KL       W  S+LWG+DL +    WKIGNGC + IF DPW+       P + SP L  
Sbjct: 907  KLGHSHSYTW-SSLLWGRDLLKHGLVWKIGNGCSVRIFEDPWI-------PDLKSPCLRS 966

Query: 66   S------TIRSLLKEDGEWDVDKIRRCFQEDDVGNILQIPRYGIHNNDEIV 111
            +      T+   +   G W  DK+   F +  + +IL++P  G+H ND +V
Sbjct: 967  NDSPPAETVSFFIDNQGFWSRDKLSHYFDDTSISSILKVPIGGLHRNDTLV 1009

[Close]

BLAST of Tan0012198 vs. ExPASy TrEMBL
Match: A0A803PV88 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 3.6e-10
Identity = 35/98 (35.71%), Postives = 53/98 (54.08%), Query Frame = 0


Query: 14  YWRQSILWGQDLFREEYRWKIGNGCQISIFNDPWLTVEGRQHPMMVSPELAQ-STIRSLL 73
           Y   S+LWG+DL +    WKIGNGC +  F DPW  +   + P + S +L    T+   +
Sbjct: 713 YTWSSLLWGRDLLKHGLVWKIGNGCSVRTFEDPW--IPDMKSPCLGSNDLPPVETVDFFI 772

Query: 74  KEDGEWDVDKIRRCFQEDDVGNILQIPRYGIHNNDEIV 111
              G W+ DK+   F    V +IL++P  G+H +D +V
Sbjct: 773 DHQGFWNRDKLNYYFDNLSVSSILRVPIGGLHRDDTLV 808

[Close]

BLAST of Tan0012198 vs. ExPASy TrEMBL
Match: A0A803NFC8 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.8e-09
Identity = 34/109 (31.19%), Postives = 56/109 (51.38%), Query Frame = 0


Query: 4   LEKLPEEEDLYWRQSILWGQDLFREEYRWKIGNGCQISIFNDPWLTVEGRQHPMMVSPEL 63
           LE +P     +  +SILWG+DL      WK+ NG  I    D WL     +     +P  
Sbjct: 108 LEAVPGHSPSFSWRSILWGRDLMASGLIWKVVNGYGIQTLGDHWLPNNRFKFFTSNNPPP 167

Query: 64  AQSTIRSLLKEDGEWDVDKIRRCFQEDDVGNILQIPRYGIHNNDEIVLE 113
           +  ++   + + G WDV K++ CF E  V +IL +P +G + +D+++ E
Sbjct: 168 SSHSLSFFITDSGTWDVGKLQSCFDESMVHDILAVPVFGSYGHDKLIWE 216

[Close]

BLAST of Tan0012198 vs. ExPASy TrEMBL
Match: A0A2I0A354 (Ribonuclease H protein OS=Apostasia shenzhenica OX=1088818 GN=AXF42_Ash017513 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 3.0e-09
Identity = 38/97 (39.18%), Postives = 52/97 (53.61%), Query Frame = 0


Query: 15  WRQSILWGQDLFREEYRWKIGNGCQISIFNDPWLTVE-GRQHPMMVSPELAQSTIRSLLK 74
           WR SILWG+DL +   RW+IGNG  + +F DPWL      Q     +P LA + I  LL 
Sbjct: 332 WR-SILWGRDLLKLGLRWRIGNGNSVRVFGDPWLPRPISFQAITSPNPNLAATRIVELLT 391

Query: 75  EDGEWDVDKIRRCFQEDDVGNILQIPRYGIHNNDEIV 111
           EDG W+ +KI       D   IL++P      +D ++
Sbjct: 392 EDGSWNWEKINSILWSIDYHLILEMPPCSTKFDDALI 427

The following BLAST results are available for this feature:

BLAST of Tan0012198 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0012198 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155286.1	1.6e-12	38.10	uncharacterized protein LOC111022423 [Momordica charantia]	[more]
XP_024950112.1	1.3e-09	36.46	uncharacterized protein LOC112496847 [Citrus sinensis]	[more]
XP_030502376.1	3.7e-09	31.19	uncharacterized protein LOC115717528 [Cannabis sativa]	[more]
XP_030494695.1	4.8e-09	35.71	uncharacterized protein LOC115710475 [Cannabis sativa]	[more]
PKA49974.1	6.3e-09	39.18	Putative ribonuclease H protein [Apostasia shenzhenica]	[more]

BLAST of Tan0012198 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DRA0	7.7e-13	38.10	uncharacterized protein LOC111022423 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A803QDR8	2.5e-11	35.14	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A803PV88	3.6e-10	35.71	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A803NFC8	1.8e-09	31.19	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A2I0A354	3.0e-09	39.18	Ribonuclease H protein OS=Apostasia shenzhenica OX=1088818 GN=AXF42_Ash017513 PE...	[more]

BLAST of Tan0012198 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0012198.1	Tan0012198.1	mRNA