Tan0011449 (gene) Snake gourd v1

Overview


Name	Tan0011449
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Histone H2A
Location	LG01: 16450638 .. 16451409 (-)
RNA-Seq Expression	Tan0011449
Synteny	Tan0011449

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCATTCAAAATATTCCCCCCTTCTGAGTCTGAACTTCCTCCCTCTCTGCATCGAATTTTCGATAAATCAATGGCGGGAAGAGGCAAAACCTTGGGATCTGGAGCGTCGAAGAAGGCAACTTCAAGGAGTAGCAAAGCCGGTCTCCAATTTCCCGTCGGTCGTATCGCTCGTTTCTTAAAGGCCGGCAAATACGCAGAGCGAGTCGGTGCCGGAGCTCCGGTTTACCTTGCCGCCGTCCTCGAGTACCTTGCAGCCGAGGTAATTAATTTTTAGTCGTTTTCGATTCATCTTCAGTAATTTCGAATCGCGCAATCGCTGATTTCTCTCGATCCCTTTGTTTTTTTTTTGATAACTTTTAGGTTCTTGAATTGGCTGGAAATGCCGCAAGGGACAACAAGAAGACTAGAATCGTGCCTCGCCATATCCAACTTGCTGTGAGGAACGACGAAGAGTTGAGCAAACTTCTCGGAGACGTAACGATTGCTAATGGCGGTGTTATGCCGAACATTCACAATCTGCTATTGCCGAAGAAGACTGGTAGTTCCAAGGCATCTGGTGGCGATGATGAACCCTAGATTATGAGAAGAAACGCGCTCGAGTTGTTCCAATCTGCGATTTTAGGTTTTTTAGGTTTTTTCTTGTTAGGTTAATGTATTCTTAACTTCGACCAGAGATCTGATGTGAATACAATCAATCTTCTTCAACAATTGTGGAATTCTTGTCCTTTAATTTGAATTTTTGATTCACAAATGGCATTGGAATTTAAATTA

mRNA sequence

ATTCATTCAAAATATTCCCCCCTTCTGAGTCTGAACTTCCTCCCTCTCTGCATCGAATTTTCGATAAATCAATGGCGGGAAGAGGCAAAACCTTGGGATCTGGAGCGTCGAAGAAGGCAACTTCAAGGAGTAGCAAAGCCGGTCTCCAATTTCCCGTCGGTCGTATCGCTCGTTTCTTAAAGGCCGGCAAATACGCAGAGCGAGTCGGTGCCGGAGCTCCGGTTTACCTTGCCGCCGTCCTCGAGTACCTTGCAGCCGAGGTTCTTGAATTGGCTGGAAATGCCGCAAGGGACAACAAGAAGACTAGAATCGTGCCTCGCCATATCCAACTTGCTGTGAGGAACGACGAAGAGTTGAGCAAACTTCTCGGAGACGTAACGATTGCTAATGGCGGTGTTATGCCGAACATTCACAATCTGCTATTGCCGAAGAAGACTGGTAGTTCCAAGGCATCTGGTGGCGATGATGAACCCTAGATTATGAGAAGAAACGCGCTCGAGTTGTTCCAATCTGCGATTTTAGGTTTTTTAGGTTTTTTCTTGTTAGGTTAATGTATTCTTAACTTCGACCAGAGATCTGATGTGAATACAATCAATCTTCTTCAACAATTGTGGAATTCTTGTCCTTTAATTTGAATTTTTGATTCACAAATGGCATTGGAATTTAAATTA

Coding sequence (CDS)

ATGGCGGGAAGAGGCAAAACCTTGGGATCTGGAGCGTCGAAGAAGGCAACTTCAAGGAGTAGCAAAGCCGGTCTCCAATTTCCCGTCGGTCGTATCGCTCGTTTCTTAAAGGCCGGCAAATACGCAGAGCGAGTCGGTGCCGGAGCTCCGGTTTACCTTGCCGCCGTCCTCGAGTACCTTGCAGCCGAGGTTCTTGAATTGGCTGGAAATGCCGCAAGGGACAACAAGAAGACTAGAATCGTGCCTCGCCATATCCAACTTGCTGTGAGGAACGACGAAGAGTTGAGCAAACTTCTCGGAGACGTAACGATTGCTAATGGCGGTGTTATGCCGAACATTCACAATCTGCTATTGCCGAAGAAGACTGGTAGTTCCAAGGCATCTGGTGGCGATGATGAACCCTAG

Protein sequence

MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGSSKASGGDDEP

Homology

[Close]

BLAST of Tan0011449 vs. ExPASy Swiss-Prot
Match: Q9C681 (Probable histone H2A.1 OS=Arabidopsis thaliana OX=3702 GN=At1g51060 PE=1 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 1.3e-61
Identity = 124/132 (93.94%), Postives = 128/132 (96.97%), Query Frame = 0


Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSG++KKAT+RSSKAGLQFPVGRIARFLK GKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGSSKASGGDD 133
           KTG+SK S  DD
Sbjct: 121 KTGASKPSAEDD 132

[Close]

BLAST of Tan0011449 vs. ExPASy Swiss-Prot
Match: Q9LD28 (Histone H2A.6 OS=Arabidopsis thaliana OX=3702 GN=RAT5 PE=1 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 1.9e-60
Identity = 122/126 (96.83%), Postives = 124/126 (98.41%), Query Frame = 0


Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSG +KKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGGAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGSSK 127
           K G+SK
Sbjct: 121 KAGASK 126

[Close]

BLAST of Tan0011449 vs. ExPASy Swiss-Prot
Match: O81826 (Probable histone H2A.3 OS=Arabidopsis thaliana OX=3702 GN=At4g27230 PE=1 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 2.5e-60
Identity = 123/131 (93.89%), Postives = 126/131 (96.18%), Query Frame = 0


Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK LGSGA+KK+TSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGSSKASGGD 132
           K GSSK +  D
Sbjct: 121 KAGSSKPTEED 131

[Close]

BLAST of Tan0011449 vs. ExPASy Swiss-Prot
Match: A2YVE5 (Probable histone H2A.3 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_028288 PE=3 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 1.6e-59
Identity = 123/134 (91.79%), Postives = 127/134 (94.78%), Query Frame = 0


Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK +GS A+KKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKAIGSSAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGAVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGSS-KASGGDDE 134
           K GSS KA+  DDE
Sbjct: 121 KAGSSAKAAAADDE 134

[Close]

BLAST of Tan0011449 vs. ExPASy Swiss-Prot
Match: Q84NJ4 (Probable histone H2A.3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0427700 PE=3 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 1.6e-59
Identity = 123/134 (91.79%), Postives = 127/134 (94.78%), Query Frame = 0


Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK +GS A+KKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKAIGSSAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGAVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGSS-KASGGDDE 134
           K GSS KA+  DDE
Sbjct: 121 KAGSSAKAAAADDE 134

[Close]

BLAST of Tan0011449 vs. NCBI nr
Match: XP_022142823.1 (probable histone H2A.1 [Momordica charantia])

HSP 1 Score: 255.0 bits (650), Expect = 3.6e-64
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGSSKASGGDDEP 135
           KTGSSKASGGDDEP
Sbjct: 121 KTGSSKASGGDDEP 134

[Close]

BLAST of Tan0011449 vs. NCBI nr
Match: KAB1215310.1 (putative histone H2A.1 [Morella rubra])

HSP 1 Score: 249.2 bits (635), Expect = 2.0e-62
Identity = 131/133 (98.50%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGASKKA SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGASKKAQSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGSSKASGGDDE 134
           KTGSSKASGGDD+
Sbjct: 121 KTGSSKASGGDDD 133

[Close]

BLAST of Tan0011449 vs. NCBI nr
Match: XP_022929379.1 (histone H2A.6 [Cucurbita moschata] >XP_022985282.1 histone H2A.6 [Cucurbita maxima] >XP_023552394.1 histone H2A.6 [Cucurbita pepo subsp. pepo] >KAG6577402.1 putative histone H2A.3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015480.1 putative histone H2A.3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 249.2 bits (635), Expect = 2.0e-62
Identity = 131/133 (98.50%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGSSKASGGDDE 134
           K GSSKASGG+DE
Sbjct: 121 KAGSSKASGGEDE 133

[Close]

BLAST of Tan0011449 vs. NCBI nr
Match: XP_039026996.1 (histone H2A.6 [Hibiscus syriacus] >KAE8680192.1 Protein H2A.7 [Hibiscus syriacus])

HSP 1 Score: 248.4 bits (633), Expect = 3.4e-62
Identity = 130/133 (97.74%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGSSKASGGDDE 134
           K G+SKASGGDD+
Sbjct: 121 KAGTSKASGGDDD 133

[Close]

BLAST of Tan0011449 vs. NCBI nr
Match: XP_039041255.1 (histone H2A.6-like [Hibiscus syriacus] >KAE8667030.1 Protein H2A.7 [Hibiscus syriacus])

HSP 1 Score: 248.1 bits (632), Expect = 4.4e-62
Identity = 130/133 (97.74%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGSSKASGGDDE 134
           KTG+SKA GGDD+
Sbjct: 121 KTGTSKAVGGDDD 133

[Close]

BLAST of Tan0011449 vs. ExPASy TrEMBL
Match: A0A6J1CP89 (Histone H2A OS=Momordica charantia OX=3673 GN=LOC111012850 PE=3 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 1.8e-64
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGSSKASGGDDEP 135
           KTGSSKASGGDDEP
Sbjct: 121 KTGSSKASGGDDEP 134

[Close]

BLAST of Tan0011449 vs. ExPASy TrEMBL
Match: A0A6A1VXK6 (Histone H2A OS=Morella rubra OX=262757 GN=CJ030_MR4G018386 PE=3 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 9.6e-63
Identity = 131/133 (98.50%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGASKKA SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGASKKAQSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGSSKASGGDDE 134
           KTGSSKASGGDD+
Sbjct: 121 KTGSSKASGGDDD 133

[Close]

BLAST of Tan0011449 vs. ExPASy TrEMBL
Match: A0A6J1J4G3 (Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111483322 PE=3 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 9.6e-63
Identity = 131/133 (98.50%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGSSKASGGDDE 134
           K GSSKASGG+DE
Sbjct: 121 KAGSSKASGGEDE 133

[Close]

BLAST of Tan0011449 vs. ExPASy TrEMBL
Match: A0A6J1ENK4 (Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111435971 PE=3 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 9.6e-63
Identity = 131/133 (98.50%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGSSKASGGDDE 134
           K GSSKASGG+DE
Sbjct: 121 KAGSSKASGGEDE 133

[Close]

BLAST of Tan0011449 vs. ExPASy TrEMBL
Match: A0A6A2XWP3 (Histone H2A OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111392pilonHSYRG00427 PE=3 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.6e-62
Identity = 130/133 (97.74%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGSSKASGGDDE 134
           K G+SKASGGDD+
Sbjct: 121 KAGTSKASGGDDD 133

[Close]

BLAST of Tan0011449 vs. TAIR 10
Match: AT1G51060.1 (histone H2A 10 )

HSP 1 Score: 236.9 bits (603), Expect = 9.5e-63
Identity = 124/132 (93.94%), Postives = 128/132 (96.97%), Query Frame = 0


Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSG++KKAT+RSSKAGLQFPVGRIARFLK GKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGSSKASGGDD 133
           KTG+SK S  DD
Sbjct: 121 KTGASKPSAEDD 132

[Close]

BLAST of Tan0011449 vs. TAIR 10
Match: AT5G54640.1 (Histone superfamily protein )

HSP 1 Score: 233.0 bits (593), Expect = 1.4e-61
Identity = 122/126 (96.83%), Postives = 124/126 (98.41%), Query Frame = 0


Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSG +KKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGGAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGSSK 127
           K G+SK
Sbjct: 121 KAGASK 126

[Close]

BLAST of Tan0011449 vs. TAIR 10
Match: AT4G27230.1 (histone H2A 2 )

HSP 1 Score: 232.6 bits (592), Expect = 1.8e-61
Identity = 123/131 (93.89%), Postives = 126/131 (96.18%), Query Frame = 0


Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK LGSGA+KK+TSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGSSKASGGD 132
           K GSSK +  D
Sbjct: 121 KAGSSKPTEED 131

[Close]

BLAST of Tan0011449 vs. TAIR 10
Match: AT4G27230.2 (histone H2A 2 )

HSP 1 Score: 232.6 bits (592), Expect = 1.8e-61
Identity = 123/131 (93.89%), Postives = 126/131 (96.18%), Query Frame = 0


Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK LGSGA+KK+TSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGSSKASGGD 132
           K GSSK +  D
Sbjct: 121 KAGSSKPTEED 131

[Close]

BLAST of Tan0011449 vs. TAIR 10
Match: AT3G20670.1 (histone H2A 13 )

HSP 1 Score: 228.8 bits (582), Expect = 2.6e-60
Identity = 120/132 (90.91%), Postives = 125/132 (94.70%), Query Frame = 0


Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSG +KK+TSRSSKAGLQFPVGRIARFLK GKYA RVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGVAKKSTSRSSKAGLQFPVGRIARFLKNGKYATRVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIH+LLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPK 120

Query: 121 KTGSSKASGGDD 133
           K G+SK S  +D
Sbjct: 121 KAGASKPSADED 132

The following BLAST results are available for this feature:

BLAST of Tan0011449 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C681	1.3e-61	93.94	Probable histone H2A.1 OS=Arabidopsis thaliana OX=3702 GN=At1g51060 PE=1 SV=1	[more]
Q9LD28	1.9e-60	96.83	Histone H2A.6 OS=Arabidopsis thaliana OX=3702 GN=RAT5 PE=1 SV=1	[more]
O81826	2.5e-60	93.89	Probable histone H2A.3 OS=Arabidopsis thaliana OX=3702 GN=At4g27230 PE=1 SV=1	[more]
A2YVE5	1.6e-59	91.79	Probable histone H2A.3 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_028288 PE=3...	[more]
Q84NJ4	1.6e-59	91.79	Probable histone H2A.3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0427700 ...	[more]

BLAST of Tan0011449 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022142823.1	3.6e-64	100.00	probable histone H2A.1 [Momordica charantia]	[more]
KAB1215310.1	2.0e-62	98.50	putative histone H2A.1 [Morella rubra]	[more]
XP_022929379.1	2.0e-62	98.50	histone H2A.6 [Cucurbita moschata] >XP_022985282.1 histone H2A.6 [Cucurbita maxi...	[more]
XP_039026996.1	3.4e-62	97.74	histone H2A.6 [Hibiscus syriacus] >KAE8680192.1 Protein H2A.7 [Hibiscus syriacus...	[more]
XP_039041255.1	4.4e-62	97.74	histone H2A.6-like [Hibiscus syriacus] >KAE8667030.1 Protein H2A.7 [Hibiscus syr...	[more]

BLAST of Tan0011449 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CP89	1.8e-64	100.00	Histone H2A OS=Momordica charantia OX=3673 GN=LOC111012850 PE=3 SV=1	[more]
A0A6A1VXK6	9.6e-63	98.50	Histone H2A OS=Morella rubra OX=262757 GN=CJ030_MR4G018386 PE=3 SV=1	[more]
A0A6J1J4G3	9.6e-63	98.50	Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111483322 PE=3 SV=1	[more]
A0A6J1ENK4	9.6e-63	98.50	Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111435971 PE=3 SV=1	[more]
A0A6A2XWP3	1.6e-62	97.74	Histone H2A OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111392pilonHSYRG00427 P...	[more]

BLAST of Tan0011449 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G51060.1	9.5e-63	93.94	histone H2A 10	[more]
AT5G54640.1	1.4e-61	96.83	Histone superfamily protein	[more]
AT4G27230.1	1.8e-61	93.89	histone H2A 2	[more]
AT4G27230.2	1.8e-61	93.89	histone H2A 2	[more]
AT3G20670.1	2.6e-60	90.91	histone H2A 13	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 44..59 score: 90.36 coord: 73..87 score: 78.86 coord: 101..119 score: 66.52 coord: 15..37 score: 72.51 coord: 59..72 score: 89.46
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 4..124 e-value: 2.8E-77 score: 272.7
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 9..121 e-value: 1.54762E-68 score: 200.254
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 1..129 e-value: 4.0E-65 score: 219.5
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 9..128
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 93..126 e-value: 6.0E-19 score: 67.5
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 13..90 e-value: 1.9E-14 score: 54.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 2..132
None	No IPR available	PANTHER	PTHR23430:SF286	HISTONE H2A.6	coord: 2..132
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 23..29

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0011449.1	Tan0011449.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031507	heterochromatin assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity