Tan0010916 (gene) Snake gourd v1

Overview


Name	Tan0010916
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	NADH-u_ox-rdase domain-containing protein
Location	LG05: 64249884 .. 64250432 (-)
RNA-Seq Expression	Tan0010916
Synteny	Tan0010916

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAAGCCCACTCATCAGTCGGCAATCACTCACACTCGTATCGTCTTCAACCGCAGCGATTCTGCAAGCGAGTTATTGCAGAGTCACACGGCGATATAGAGAGAAAGACAGCCAGCAGAGATCAGTTTCAGTTTCAGCTCCGGAAAAGACAAAATGAACACCGACATTACAGCGTCGACCAAGCCAGAGTACCCAGTTATAGATCGGAACCCTCCATTCACCAAAGTCGTCGGCAATTTTGACACTCTCGATTACCTCCGTTTCGTTACCATCACCGGCGTTTCCGTCACCGTCGGTTATCTTTCCGGTATTCATTGCTTATTTCTTCTCTTCTTCTTTGCTTCTCTTCCATTTCGTTGCTAATCTGGAAATGTGTTCTATTCTTTGCGTTTTTTAGGGATTAAGCCGGGGATTAGGGGCCCGTCAATGGTGACCGGTGGTCTAATTGGGCTGATGGGAGGCTTCATGTACGCTTATCAGAACTCGGCCGGTCGGCTAATGGGTTTTTTCCCCAATGAAGGCGAGGTAGCTCGTTACAAGAAATAA

mRNA sequence

ATGAAAAAGCCCACTCATCAGTCGGCAATCACTCACACTCGTATCGTCTTCAACCGCAGCGATTCTGCAAGCGAGTTATTGCAGAGTCACACGATCAGTTTCAGTTTCAGCTCCGGAAAAGACAAAATGAACACCGACATTACAGCGTCGACCAAGCCAGAGTACCCAGTTATAGATCGGAACCCTCCATTCACCAAAGTCGTCGGCAATTTTGACACTCTCGATTACCTCCGTTTCGTTACCATCACCGGCGTTTCCGTCACCGTCGGTTATCTTTCCGGGATTAAGCCGGGGATTAGGGGCCCGTCAATGGTGACCGGTGGTCTAATTGGGCTGATGGGAGGCTTCATGTACGCTTATCAGAACTCGGCCGGTCGGCTAATGGGTTTTTTCCCCAATGAAGGCGAGGTAGCTCGTTACAAGAAATAA

Coding sequence (CDS)

ATGAAAAAGCCCACTCATCAGTCGGCAATCACTCACACTCGTATCGTCTTCAACCGCAGCGATTCTGCAAGCGAGTTATTGCAGAGTCACACGATCAGTTTCAGTTTCAGCTCCGGAAAAGACAAAATGAACACCGACATTACAGCGTCGACCAAGCCAGAGTACCCAGTTATAGATCGGAACCCTCCATTCACCAAAGTCGTCGGCAATTTTGACACTCTCGATTACCTCCGTTTCGTTACCATCACCGGCGTTTCCGTCACCGTCGGTTATCTTTCCGGGATTAAGCCGGGGATTAGGGGCCCGTCAATGGTGACCGGTGGTCTAATTGGGCTGATGGGAGGCTTCATGTACGCTTATCAGAACTCGGCCGGTCGGCTAATGGGTTTTTTCCCCAATGAAGGCGAGGTAGCTCGTTACAAGAAATAA

Protein sequence

MKKPTHQSAITHTRIVFNRSDSASELLQSHTISFSFSSGKDKMNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK

Homology

[Close]

BLAST of Tan0010916 vs. NCBI nr
Match: XP_022142552.1 (NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Momordica charantia] >XP_022925305.1 NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita moschata] >XP_022966760.1 NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita maxima] >XP_023001508.1 NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita maxima] >XP_023541604.1 NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita pepo subsp. pepo] >KAG6573532.1 hypothetical protein SDJN03_27419, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012647.1 hypothetical protein SDJN02_25399 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 204.9 bits (520), Expect = 4.6e-49
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 43  MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 102
           MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 103 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 143
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 100

[Close]

BLAST of Tan0010916 vs. NCBI nr
Match: XP_022927362.1 (NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita moschata] >XP_023520383.1 NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 204.1 bits (518), Expect = 7.8e-49
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 43  MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 102
           MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 103 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 143
           SMVTGGLIGLMGGFMYAYQNSAGR+MGFFPNEGEVARYKK
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNEGEVARYKK 100

[Close]

BLAST of Tan0010916 vs. NCBI nr
Match: XP_008463609.1 (PREDICTED: NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Cucumis melo] >XP_038894012.1 NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Benincasa hispida])

HSP 1 Score: 203.8 bits (517), Expect = 1.0e-48
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 43  MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 102
           MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 103 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 143
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPN+GEVARYKK
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 100

[Close]

BLAST of Tan0010916 vs. NCBI nr
Match: XP_011654950.1 (NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Cucumis sativus] >XP_031745943.1 NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucumis sativus])

HSP 1 Score: 203.4 bits (516), Expect = 1.3e-48
Identity = 98/100 (98.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 43  MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 102
           MNTDITASTKPEYPV+DRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 103 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 143
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPN+GEVARYKK
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 100

[Close]

BLAST of Tan0010916 vs. NCBI nr
Match: KAG6583741.1 (Heterogeneous nuclear ribonucleoprotein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 203.0 bits (515), Expect = 1.7e-48
Identity = 98/103 (95.15%), Postives = 102/103 (99.03%), Query Frame = 0


Query: 35  SFSSGKDKMNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSG 94
           SFS+G+D MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSG
Sbjct: 158 SFSTGEDVMNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSG 217

Query: 95  IKPGIRGPSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEV 138
           IKPGIRGPSMVTGGLIGLMGGFMYAYQNSAGR+MGFFPNEGE+
Sbjct: 218 IKPGIRGPSMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNEGEI 260

[Close]

BLAST of Tan0010916 vs. ExPASy TrEMBL
Match: A0A0A0LT27 (NADH-u_ox-rdase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G181470 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 4.8e-52
Identity = 104/108 (96.30%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 35  SFSSGKDKMNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSG 94
           SFS G+DKMNTDITASTKPEYPV+DRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSG
Sbjct: 38  SFSYGEDKMNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSG 97

Query: 95  IKPGIRGPSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 143
           IKPGIRGPSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPN+GEVARYKK
Sbjct: 98  IKPGIRGPSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 145

[Close]

BLAST of Tan0010916 vs. ExPASy TrEMBL
Match: A0A6J1HSH8 (NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like OS=Cucurbita maxima OX=3661 GN=LOC111466374 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 2.2e-49
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 43  MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 102
           MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 103 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 143
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 100

[Close]

BLAST of Tan0010916 vs. ExPASy TrEMBL
Match: A0A6J1CN33 (NADH-ubiquinone oxidoreductase 20.9 kDa subunit OS=Momordica charantia OX=3673 GN=LOC111012637 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 2.2e-49
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 43  MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 102
           MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 103 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 143
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 100

[Close]

BLAST of Tan0010916 vs. ExPASy TrEMBL
Match: A0A6J1EHK1 (NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like OS=Cucurbita moschata OX=3662 GN=LOC111432598 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 2.2e-49
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 43  MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 102
           MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 103 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 143
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 100

[Close]

BLAST of Tan0010916 vs. ExPASy TrEMBL
Match: A0A6J1EGY7 (NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like OS=Cucurbita moschata OX=3662 GN=LOC111434210 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 3.8e-49
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 43  MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 102
           MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 103 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 143
           SMVTGGLIGLMGGFMYAYQNSAGR+MGFFPNEGEVARYKK
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNEGEVARYKK 100

[Close]

BLAST of Tan0010916 vs. TAIR 10
Match: AT4G16450.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, mitochondrial respiratory chain complex I, respiratory chain complex I, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 181.4 bits (459), Expect = 5.0e-46
Identity = 87/100 (87.00%), Postives = 93/100 (93.00%), Query Frame = 0


Query: 43  MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 102
           MNTDITA  K +YPV+DRNP FTKVVGNF TLDYLRF TITG+SVTVGYLSGIKPGI+GP
Sbjct: 1   MNTDITALEKAQYPVVDRNPAFTKVVGNFSTLDYLRFSTITGISVTVGYLSGIKPGIKGP 60

Query: 103 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 143
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPN+GEVA Y+K
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVASYQK 100

[Close]

BLAST of Tan0010916 vs. TAIR 10
Match: AT4G16450.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages. )

HSP 1 Score: 181.4 bits (459), Expect = 5.0e-46
Identity = 87/100 (87.00%), Postives = 93/100 (93.00%), Query Frame = 0


Query: 43  MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 102
           MNTDITA  K +YPV+DRNP FTKVVGNF TLDYLRF TITG+SVTVGYLSGIKPGI+GP
Sbjct: 1   MNTDITALEKAQYPVVDRNPAFTKVVGNFSTLDYLRFSTITGISVTVGYLSGIKPGIKGP 60

Query: 103 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 143
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPN+GEVA Y+K
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVASYQK 100

The following BLAST results are available for this feature:

BLAST of Tan0010916 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0010916 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022142552.1	4.6e-49	100.00	NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Momordica charantia] >XP_022925...	[more]
XP_022927362.1	7.8e-49	99.00	NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita moschata] >XP_02...	[more]
XP_008463609.1	1.0e-48	99.00	PREDICTED: NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Cucumis melo] >XP_03...	[more]
XP_011654950.1	1.3e-48	98.00	NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Cucumis sativus] >XP_031745943....	[more]
KAG6583741.1	1.7e-48	95.15	Heterogeneous nuclear ribonucleoprotein 1, partial [Cucurbita argyrosperma subsp...	[more]

BLAST of Tan0010916 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LT27	4.8e-52	96.30	NADH-u_ox-rdase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G18...	[more]
A0A6J1HSH8	2.2e-49	100.00	NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like OS=Cucurbita maxima OX=3661...	[more]
A0A6J1CN33	2.2e-49	100.00	NADH-ubiquinone oxidoreductase 20.9 kDa subunit OS=Momordica charantia OX=3673 G...	[more]
A0A6J1EHK1	2.2e-49	100.00	NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like OS=Cucurbita moschata OX=36...	[more]
A0A6J1EGY7	3.8e-49	99.00	NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like OS=Cucurbita moschata OX=36...	[more]

BLAST of Tan0010916 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G16450.1	5.0e-46	87.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photores...	[more]
AT4G16450.2	5.0e-46	87.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photores...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019721	NADH-ubiquinone oxidoreductase, 21kDa subunit, N-terminal	PFAM	PF10785	NADH-u_ox-rdase	coord: 53..131 e-value: 2.5E-20 score: 73.0
None	No IPR available	PANTHER	PTHR34062:SF2	NADH-UBIQUINONE OXIDOREDUCTASE 20.9 KDA SUBUNIT-LIKE	coord: 43..141
None	No IPR available	PANTHER	PTHR34062	OXIDOREDUCTASE 21 KDA SUBUNIT, PUTATIVE (AFU_ORTHOLOGUE AFUA_4G04750)-RELATED	coord: 43..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0010916.1	Tan0010916.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005747	mitochondrial respiratory chain complex I