Tan0010600 (gene) Snake gourd v1

Overview


Name	Tan0010600
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Ycf15
Location	LG10: 29984247 .. 29984524 (-)
RNA-Seq Expression	Tan0010600
Synteny	Tan0010600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCAATAAACTACTGCTGAAACATGGAAGAATTGAAATCAAAATTATGTATGGATGGTATGAACTGCCTAAACAAAAATTATAGAACAACGAACAACCAGAGTTATTACTCACTACATCAATCAATTTCCATTAATGAAAGATGTAAATACATTGGAAAATCAAAAATACACATGCCAGATGAAATGGTTGTTGCTATCTGTTCTAGTATCGGGAGCTCTTTGGATATCATTTGTTGTGAAATTGAAACTACATAGCTCACTGCAACTTCCTTAG

mRNA sequence

ATGATCAATAAACTACTGCTGAAACATGGAAGAATTGAAATCAAAATTATGTATGGATGGTATGAACTAGTTATTACTCACTACATCAATCAATTTCCATTAATGAAAGATGTAAATACATTGGAAAATCAAAAATACACATGCCAGATGAAATGGTTGTTGCTATCTGTTCTAGTATCGGGAGCTCTTTGGATATCATTTGTTGTGAAATTGAAACTACATAGCTCACTGCAACTTCCTTAG

Coding sequence (CDS)

ATGATCAATAAACTACTGCTGAAACATGGAAGAATTGAAATCAAAATTATGTATGGATGGTATGAACTAGTTATTACTCACTACATCAATCAATTTCCATTAATGAAAGATGTAAATACATTGGAAAATCAAAAATACACATGCCAGATGAAATGGTTGTTGCTATCTGTTCTAGTATCGGGAGCTCTTTGGATATCATTTGTTGTGAAATTGAAACTACATAGCTCACTGCAACTTCCTTAG

Protein sequence

MINKLLLKHGRIEIKIMYGWYELVITHYINQFPLMKDVNTLENQKYTCQMKWLLLSVLVSGALWISFVVKLKLHSSLQLP

Homology

[Close]

BLAST of Tan0010600 vs. ExPASy Swiss-Prot
Match: Q09FP9 (Putative uncharacterized protein ycf15 OS=Nandina domestica OX=41776 GN=ycf15-A PE=5 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.6e-14
Identity = 43/73 (58.90%), Postives = 47/73 (64.38%), Query Frame = 0


Query: 3  NKLLLKHGRIEI---KIMYGWYEL------------VITHYINQFPLMKDVNTLENQKYT 61
          N LLLKHGRIEI     MYGWYEL             ITHYI +FPLMK VN LEN+KY 
Sbjct: 17 NMLLLKHGRIEILDQNTMYGWYELPKQEFLNGEQLEPITHYIKKFPLMKHVNPLENKKYA 76

[Close]

BLAST of Tan0010600 vs. ExPASy Swiss-Prot
Match: Q0ZIV7 (Putative uncharacterized protein ycf15 OS=Vitis vinifera OX=29760 GN=ycf15-A PE=5 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.6e-14
Identity = 43/71 (60.56%), Postives = 47/71 (66.20%), Query Frame = 0


Query: 5  LLLKHGRIEI---KIMYGWYEL------------VITHYINQFPLMKDVNTLENQKYTCQ 61
          LLLKHGRIEI     MYGWY+L             ITHYI +FPLMKDVN LENQKY C 
Sbjct: 2  LLLKHGRIEILDQNTMYGWYKLPKQEFLNSEQPEPITHYIKKFPLMKDVNPLENQKYACL 61

[Close]

BLAST of Tan0010600 vs. ExPASy Swiss-Prot
Match: Q06GT5 (Putative uncharacterized protein ycf15 OS=Drimys granadensis OX=224735 GN=ycf15-A PE=5 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.4e-13
Identity = 42/71 (59.15%), Postives = 46/71 (64.79%), Query Frame = 0


Query: 5  LLLKHGRIEI---KIMYGWYEL------------VITHYINQFPLMKDVNTLENQKYTCQ 61
          LLLKHGRIEI     MYGWYEL             ITHYI QFPLMKDVN+LEN+K  C 
Sbjct: 2  LLLKHGRIEILDQNTMYGWYELPKQEFLNGEQPEPITHYIKQFPLMKDVNSLENKKDACP 61

[Close]

BLAST of Tan0010600 vs. ExPASy Swiss-Prot
Match: Q7Y6G9 (Putative uncharacterized protein ycf15 OS=Calycanthus floridus var. glaucus OX=212734 GN=ycf15-A PE=5 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.1e-13
Identity = 43/71 (60.56%), Postives = 45/71 (63.38%), Query Frame = 0


Query: 5  LLLKHGRIEI---KIMYGWYEL------------VITHYINQFPLMKDVNTLENQKYTCQ 61
          LLLKHGRIEI     MYGWYEL             ITHYI QFPLMK VN LENQK  C 
Sbjct: 2  LLLKHGRIEILDQNTMYGWYELPKQEFLNGEQPEPITHYIKQFPLMKHVNPLENQKDACP 61

[Close]

BLAST of Tan0010600 vs. ExPASy Swiss-Prot
Match: Q6EVY8 (Putative uncharacterized protein ycf15 OS=Nymphaea alba OX=34301 GN=ycf15-A PE=5 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-12
Identity = 42/71 (59.15%), Postives = 44/71 (61.97%), Query Frame = 0


Query: 5  LLLKHGRIEI---KIMYGWYEL------------VITHYINQFPLMKDVNTLENQKYTCQ 61
          LLLKHG IEI     MYGWYEL             ITHYI QFPLMK VN LENQK  C 
Sbjct: 2  LLLKHGTIEILDQNTMYGWYELPKQEFWNGEQPEPITHYIKQFPLMKHVNPLENQKCACP 61

[Close]

BLAST of Tan0010600 vs. NCBI nr
Match: ABQ14909.1 (Ycf15 [Pterostemon rotundifolius])

HSP 1 Score: 85.1 bits (209), Expect = 3.0e-13
Identity = 46/73 (63.01%), Postives = 49/73 (67.12%), Query Frame = 0


Query: 3  NKLLLKHGRIEI---KIMYGWYEL------------VITHYINQFPLMKDVNTLENQKYT 61
          N LLLKHGRIEI     MYGWYEL             ITHYI +FPLMKDVN LENQKY 
Sbjct: 17 NMLLLKHGRIEILDQNTMYGWYELPKQEFLNSEQPEPITHYIKKFPLMKDVNPLENQKYA 76

[Close]

BLAST of Tan0010600 vs. NCBI nr
Match: ABQ14816.1 (Ycf15 [Cercidiphyllum japonicum])

HSP 1 Score: 82.8 bits (203), Expect = 1.5e-12
Identity = 45/73 (61.64%), Postives = 48/73 (65.75%), Query Frame = 0


Query: 3  NKLLLKHGRIEI---KIMYGWYEL------------VITHYINQFPLMKDVNTLENQKYT 61
          N LLLKHGRIEI     MYGWYEL             ITHYI +FPLMKDVN LENQKY 
Sbjct: 17 NMLLLKHGRIEILDQNTMYGWYELPKQEFLNSEQPEPITHYIKEFPLMKDVNPLENQKYA 76

[Close]

BLAST of Tan0010600 vs. NCBI nr
Match: YP_007375088.1 (hypothetical chloroplast RF15 [Quercus rubra] >AGC31291.1 hypothetical chloroplast RF15 [Quercus rubra])

HSP 1 Score: 82.8 bits (203), Expect = 1.5e-12
Identity = 42/70 (60.00%), Postives = 50/70 (71.43%), Query Frame = 0


Query: 6  LLKHGRIEI---KIMYGWYEL------------VITHYINQFPLMKDVNTLENQKYTCQM 61
          +LKHGRIEI    IMYGWYEL            ++THYI +FPLMKDVN LEN+KY C+M
Sbjct: 1  MLKHGRIEILDQNIMYGWYELPKQEFLNSEQPELVTHYIKKFPLMKDVNPLENKKYACRM 60

[Close]

BLAST of Tan0010600 vs. NCBI nr
Match: ABQ14868.1 (Ycf15 [Liquidambar styraciflua])

HSP 1 Score: 82.4 bits (202), Expect = 1.9e-12
Identity = 45/73 (61.64%), Postives = 48/73 (65.75%), Query Frame = 0


Query: 3  NKLLLKHGRIEI---KIMYGWYEL------------VITHYINQFPLMKDVNTLENQKYT 61
          N LLLKHGRIEI     MYGWYEL             ITHYI +FPLMKDVN LENQKY 
Sbjct: 17 NMLLLKHGRIEILDQNTMYGWYELPKQEFLNSEQPKPITHYIKKFPLMKDVNPLENQKYA 76

[Close]

BLAST of Tan0010600 vs. NCBI nr
Match: ABQ14824.1 (Ycf15 [Daphniphyllum sp. 205-82] >ABQ14832.1 Ycf15 [Hamamelis japonica])

HSP 1 Score: 82.4 bits (202), Expect = 1.9e-12
Identity = 45/73 (61.64%), Postives = 48/73 (65.75%), Query Frame = 0


Query: 3  NKLLLKHGRIEI---KIMYGWYEL------------VITHYINQFPLMKDVNTLENQKYT 61
          N LLLKHGRIEI     MYGWYEL             ITHYI +FPLMKDVN LENQKY 
Sbjct: 17 NMLLLKHGRIEILDQNTMYGWYELPKQEFLNSEQPEPITHYIKKFPLMKDVNPLENQKYA 76

[Close]

BLAST of Tan0010600 vs. ExPASy TrEMBL
Match: A6YA49 (Ycf15 OS=Pterostemon rotundifolius OX=23090 GN=ycf15 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.4e-13
Identity = 46/73 (63.01%), Postives = 49/73 (67.12%), Query Frame = 0


Query: 3  NKLLLKHGRIEI---KIMYGWYEL------------VITHYINQFPLMKDVNTLENQKYT 61
          N LLLKHGRIEI     MYGWYEL             ITHYI +FPLMKDVN LENQKY 
Sbjct: 17 NMLLLKHGRIEILDQNTMYGWYELPKQEFLNSEQPEPITHYIKKFPLMKDVNPLENQKYA 76

[Close]

BLAST of Tan0010600 vs. ExPASy TrEMBL
Match: L7TBC8 (Hypothetical chloroplast RF15 OS=Quercus rubra OX=3512 GN=ycf15 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 7.1e-13
Identity = 42/70 (60.00%), Postives = 50/70 (71.43%), Query Frame = 0


Query: 6  LLKHGRIEI---KIMYGWYEL------------VITHYINQFPLMKDVNTLENQKYTCQM 61
          +LKHGRIEI    IMYGWYEL            ++THYI +FPLMKDVN LEN+KY C+M
Sbjct: 1  MLKHGRIEILDQNIMYGWYELPKQEFLNSEQPELVTHYIKKFPLMKDVNPLENKKYACRM 60

[Close]

BLAST of Tan0010600 vs. ExPASy TrEMBL
Match: A6Y9V6 (Ycf15 OS=Cercidiphyllum japonicum OX=13413 GN=ycf15 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 7.1e-13
Identity = 45/73 (61.64%), Postives = 48/73 (65.75%), Query Frame = 0


Query: 3  NKLLLKHGRIEI---KIMYGWYEL------------VITHYINQFPLMKDVNTLENQKYT 61
          N LLLKHGRIEI     MYGWYEL             ITHYI +FPLMKDVN LENQKY 
Sbjct: 17 NMLLLKHGRIEILDQNTMYGWYELPKQEFLNSEQPEPITHYIKEFPLMKDVNPLENQKYA 76

[Close]

BLAST of Tan0010600 vs. ExPASy TrEMBL
Match: A6YA08 (Ycf15 OS=Liquidambar styraciflua OX=4400 GN=ycf15 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 9.3e-13
Identity = 45/73 (61.64%), Postives = 48/73 (65.75%), Query Frame = 0


Query: 3  NKLLLKHGRIEI---KIMYGWYEL------------VITHYINQFPLMKDVNTLENQKYT 61
          N LLLKHGRIEI     MYGWYEL             ITHYI +FPLMKDVN LENQKY 
Sbjct: 17 NMLLLKHGRIEILDQNTMYGWYELPKQEFLNSEQPKPITHYIKKFPLMKDVNPLENQKYA 76

[Close]

BLAST of Tan0010600 vs. ExPASy TrEMBL
Match: A6Y9X2 (Ycf15 OS=Hamamelis japonica OX=63355 GN=ycf15 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 9.3e-13
Identity = 45/73 (61.64%), Postives = 48/73 (65.75%), Query Frame = 0


Query: 3  NKLLLKHGRIEI---KIMYGWYEL------------VITHYINQFPLMKDVNTLENQKYT 61
          N LLLKHGRIEI     MYGWYEL             ITHYI +FPLMKDVN LENQKY 
Sbjct: 17 NMLLLKHGRIEILDQNTMYGWYELPKQEFLNSEQPEPITHYIKKFPLMKDVNPLENQKYA 76

[Close]

BLAST of Tan0010600 vs. TAIR 10
Match: ATCG00870.1 (Protein precursor Ycf15, putative, chloroplast )

HSP 1 Score: 65.5 bits (158), Expect = 2.3e-11
Identity = 38/74 (51.35%), Postives = 46/74 (62.16%), Query Frame = 0


Query: 5  LLLKHGRIEI---KIMYGWYELVITHYIN------------QFPLMKDVNTLENQKYTCQ 64
          LLLKHGRIEI     MYGWYEL    ++N            +FPL+KD N LENQKY C+
Sbjct: 2  LLLKHGRIEILDQNTMYGWYELPKQEFLNSEQPELLLTTSKKFPLIKDGNPLENQKYACR 61

[Close]

BLAST of Tan0010600 vs. TAIR 10
Match: ATCG01270.1 (Protein precursor Ycf15, putative, chloroplast )

HSP 1 Score: 65.5 bits (158), Expect = 2.3e-11
Identity = 38/74 (51.35%), Postives = 46/74 (62.16%), Query Frame = 0


Query: 5  LLLKHGRIEI---KIMYGWYELVITHYIN------------QFPLMKDVNTLENQKYTCQ 64
          LLLKHGRIEI     MYGWYEL    ++N            +FPL+KD N LENQKY C+
Sbjct: 2  LLLKHGRIEILDQNTMYGWYELPKQEFLNSEQPELLLTTSKKFPLIKDGNPLENQKYACR 61

The following BLAST results are available for this feature:

BLAST of Tan0010600 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q09FP9	3.6e-14	58.90	Putative uncharacterized protein ycf15 OS=Nandina domestica OX=41776 GN=ycf15-A ...	[more]
Q0ZIV7	3.6e-14	60.56	Putative uncharacterized protein ycf15 OS=Vitis vinifera OX=29760 GN=ycf15-A PE=...	[more]
Q06GT5	2.4e-13	59.15	Putative uncharacterized protein ycf15 OS=Drimys granadensis OX=224735 GN=ycf15-...	[more]
Q7Y6G9	3.1e-13	60.56	Putative uncharacterized protein ycf15 OS=Calycanthus floridus var. glaucus OX=2...	[more]
Q6EVY8	1.2e-12	59.15	Putative uncharacterized protein ycf15 OS=Nymphaea alba OX=34301 GN=ycf15-A PE=5...	[more]

BLAST of Tan0010600 vs. NCBI nr


Match Name	E-value	Identity	Description
ABQ14909.1	3.0e-13	63.01	Ycf15 [Pterostemon rotundifolius]	[more]
ABQ14816.1	1.5e-12	61.64	Ycf15 [Cercidiphyllum japonicum]	[more]
YP_007375088.1	1.5e-12	60.00	hypothetical chloroplast RF15 [Quercus rubra] >AGC31291.1 hypothetical chloropla...	[more]
ABQ14868.1	1.9e-12	61.64	Ycf15 [Liquidambar styraciflua]	[more]
ABQ14824.1	1.9e-12	61.64	Ycf15 [Daphniphyllum sp. 205-82] >ABQ14832.1 Ycf15 [Hamamelis japonica]	[more]

BLAST of Tan0010600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A6YA49	1.4e-13	63.01	Ycf15 OS=Pterostemon rotundifolius OX=23090 GN=ycf15 PE=3 SV=1	[more]
L7TBC8	7.1e-13	60.00	Hypothetical chloroplast RF15 OS=Quercus rubra OX=3512 GN=ycf15 PE=3 SV=1	[more]
A6Y9V6	7.1e-13	61.64	Ycf15 OS=Cercidiphyllum japonicum OX=13413 GN=ycf15 PE=3 SV=1	[more]
A6YA08	9.3e-13	61.64	Ycf15 OS=Liquidambar styraciflua OX=4400 GN=ycf15 PE=3 SV=1	[more]
A6Y9X2	9.3e-13	61.64	Ycf15 OS=Hamamelis japonica OX=63355 GN=ycf15 PE=3 SV=1	[more]

BLAST of Tan0010600 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00870.1	2.3e-11	51.35	Protein precursor Ycf15, putative, chloroplast	[more]
ATCG01270.1	2.3e-11	51.35	Protein precursor Ycf15, putative, chloroplast	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019645	Uncharacterised protein family Ycf15	PFAM	PF10705	Ycf15	coord: 3..46 e-value: 5.8E-6 score: 26.5

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0010600.1	Tan0010600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009536	plastid