Tan0010064 (gene) Snake gourd v1

Overview


Name	Tan0010064
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	kinetochore protein SPC24 homolog
Location	LG03: 63585352 .. 63585760 (-)
RNA-Seq Expression	Tan0010064
Synteny	Tan0010064

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGATTTCTCCGGAAAGATGAACATCGAGGAGCTCTTGTCTTATGGCGACGATCTAGTGGCTTTCTTGAAGGACCAAAAGGACGTTCAAACCTTGAATCAATGTCTCGAACATGTCAAGGCCCTTCAATCTTCTTGTGACGATGATTTTAGTAATGTTCACAGTTCAGTTCAAGGTCTATTCTCTCTCTCTCTCTCTCTCTCACGAACTGTGACAGTTGGTTTCTTATAATTTGTTTAATGAGTCGTTAATTGAAGCAGATTATAAGAAGAAGATTGAGGCATGCCGGCAGAAATCTGAGGAGGCGAAAGCGAGAACTGTTGCAGATGATGAAATGGATATTCTCGAAAAGGAGCTGGAAGAGGAACTTCGGAAAGAGAATTTGCTCATGGAGGAGATTAGATGA

mRNA sequence

ATGGGAGATTTCTCCGGAAAGATGAACATCGAGGAGCTCTTGTCTTATGGCGACGATCTAGTGGCTTTCTTGAAGGACCAAAAGGACGTTCAAACCTTGAATCAATGTCTCGAACATGTCAAGGCCCTTCAATCTTCTTGTGACGATGATTTTAGTAATGTTCACAGTTCAGTTCAAGATTATAAGAAGAAGATTGAGGCATGCCGGCAGAAATCTGAGGAGGCGAAAGCGAGAACTGTTGCAGATGATGAAATGGATATTCTCGAAAAGGAGCTGGAAGAGGAACTTCGGAAAGAGAATTTGCTCATGGAGGAGATTAGATGA

Coding sequence (CDS)

ATGGGAGATTTCTCCGGAAAGATGAACATCGAGGAGCTCTTGTCTTATGGCGACGATCTAGTGGCTTTCTTGAAGGACCAAAAGGACGTTCAAACCTTGAATCAATGTCTCGAACATGTCAAGGCCCTTCAATCTTCTTGTGACGATGATTTTAGTAATGTTCACAGTTCAGTTCAAGATTATAAGAAGAAGATTGAGGCATGCCGGCAGAAATCTGAGGAGGCGAAAGCGAGAACTGTTGCAGATGATGAAATGGATATTCTCGAAAAGGAGCTGGAAGAGGAACTTCGGAAAGAGAATTTGCTCATGGAGGAGATTAGATGA

Protein sequence

MGDFSGKMNIEELLSYGDDLVAFLKDQKDVQTLNQCLEHVKALQSSCDDDFSNVHSSVQDYKKKIEACRQKSEEAKARTVADDEMDILEKELEEELRKENLLMEEIR

Homology

[Close]

BLAST of Tan0010064 vs. ExPASy Swiss-Prot
Match: Q67XT3 (Kinetochore protein SPC24 homolog OS=Arabidopsis thaliana OX=3702 GN=SPC24 PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 4.0e-16
Identity = 44/107 (41.12%), Postives = 72/107 (67.29%), Query Frame = 0


Query: 1   MGDFSGKMNIEELLSYGDDLVAFLKDQKDVQTLNQCLEHVKALQSSCDDDFSNVHSSVQD 60
           MG+ S   +IE+L+SYGDDL+  L  +     ++Q  E  KAL  +C +DF+ +  S++D
Sbjct: 1   MGNASENFDIEDLMSYGDDLINLLNVKNGFDIISQSSEQFKALNFACHEDFNQIQGSIED 60

Query: 61  YKKKIEACRQKSEEAKARTVADDEMDILEKELEEELRKENLLMEEIR 108
            K K+ AC++K+EEA +   A+DE++ L+KEL+EE+ +E  L +E+R
Sbjct: 61  CKTKLYACKKKTEEAYSDIAAEDEIERLQKELDEEMEREFKLKDELR 107

[Close]

BLAST of Tan0010064 vs. NCBI nr
Match: XP_022144074.1 (uncharacterized protein LOC111013852 isoform X1 [Momordica charantia])

HSP 1 Score: 186.8 bits (473), Expect = 9.7e-44
Identity = 97/107 (90.65%), Postives = 104/107 (97.20%), Query Frame = 0


Query: 1   MGDFSGKMNIEELLSYGDDLVAFLKDQKDVQTLNQCLEHVKALQSSCDDDFSNVHSSVQD 60
           MGDFSGK+NIEELLSYG+DLVA LKDQKDVQTLNQCLEHVKALQS CDDDFSNVHSSVQD
Sbjct: 1   MGDFSGKINIEELLSYGNDLVALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQD 60

Query: 61  YKKKIEACRQKSEEAKARTVADDEMDILEKELEEELRKENLLMEEIR 108
           Y+KKIEACRQK+EEAKARTVAD EMD+LE+ELEEELRKE+LLMEEIR
Sbjct: 61  YEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKEHLLMEEIR 107

[Close]

BLAST of Tan0010064 vs. NCBI nr
Match: XP_022144075.1 (uncharacterized protein LOC111013852 isoform X2 [Momordica charantia])

HSP 1 Score: 172.9 bits (437), Expect = 1.4e-39
Identity = 92/107 (85.98%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 1   MGDFSGKMNIEELLSYGDDLVAFLKDQKDVQTLNQCLEHVKALQSSCDDDFSNVHSSVQD 60
           MGDFSGK+NIEELLSYG+DLVA LKDQKDVQTLNQCLEHVKALQS CDDDFSNVH    +
Sbjct: 1   MGDFSGKINIEELLSYGNDLVALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVH----N 60

Query: 61  YKKKIEACRQKSEEAKARTVADDEMDILEKELEEELRKENLLMEEIR 108
           Y+KKIEACRQK+EEAKARTVAD EMD+LE+ELEEELRKE+LLMEEIR
Sbjct: 61  YEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKEHLLMEEIR 103

[Close]

BLAST of Tan0010064 vs. NCBI nr
Match: XP_023518318.1 (uncharacterized protein LOC111781837 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 170.6 bits (431), Expect = 7.2e-39
Identity = 89/107 (83.18%), Postives = 97/107 (90.65%), Query Frame = 0


Query: 1   MGDFSGKMNIEELLSYGDDLVAFLKDQKDVQTLNQCLEHVKALQSSCDDDFSNVHSSVQD 60
           MGDFSGKMNIE+LLSYGDDLVA LKDQ DVQTLNQCL+   ALQSSC DD  NVHSSVQD
Sbjct: 1   MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQQFNALQSSCHDDSRNVHSSVQD 60

Query: 61  YKKKIEACRQKSEEAKARTVADDEMDILEKELEEELRKENLLMEEIR 108
           Y+KKIE CR K+EEAKARTVADDEMDILEKE+EEE+R+E+LLMEEIR
Sbjct: 61  YEKKIEECRVKTEEAKARTVADDEMDILEKEIEEEVREEHLLMEEIR 107

[Close]

BLAST of Tan0010064 vs. NCBI nr
Match: XP_022931907.1 (uncharacterized protein LOC111438184 [Cucurbita moschata] >XP_022931908.1 uncharacterized protein LOC111438184 [Cucurbita moschata])

HSP 1 Score: 169.9 bits (429), Expect = 1.2e-38
Identity = 89/107 (83.18%), Postives = 97/107 (90.65%), Query Frame = 0


Query: 1   MGDFSGKMNIEELLSYGDDLVAFLKDQKDVQTLNQCLEHVKALQSSCDDDFSNVHSSVQD 60
           MGDFSGKMNIE+LLSYGDDLVA LKDQ DVQTLNQCL+H  ALQSS  DD  NVHSSVQD
Sbjct: 1   MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQD 60

Query: 61  YKKKIEACRQKSEEAKARTVADDEMDILEKELEEELRKENLLMEEIR 108
           Y+KKIE CR K+EEAKARTVADDEMDILEKE+EEE+R+E+LLMEEIR
Sbjct: 61  YEKKIEECRVKTEEAKARTVADDEMDILEKEIEEEVREEHLLMEEIR 107

[Close]

BLAST of Tan0010064 vs. NCBI nr
Match: XP_022966574.1 (uncharacterized protein LOC111466216 [Cucurbita maxima])

HSP 1 Score: 168.7 bits (426), Expect = 2.7e-38
Identity = 90/107 (84.11%), Postives = 97/107 (90.65%), Query Frame = 0


Query: 1   MGDFSGKMNIEELLSYGDDLVAFLKDQKDVQTLNQCLEHVKALQSSCDDDFSNVHSSVQD 60
           MGDFSGKMNIEELLSYG+DLV  LKDQ DVQTLNQCL+H  ALQSSC DDFSNVH  VQD
Sbjct: 1   MGDFSGKMNIEELLSYGNDLVVLLKDQNDVQTLNQCLQHFNALQSSCHDDFSNVH-LVQD 60

Query: 61  YKKKIEACRQKSEEAKARTVADDEMDILEKELEEELRKENLLMEEIR 108
           Y+KKIE CR K+EEAKARTVADDEMDILEKE+EEELR+E+LLMEEIR
Sbjct: 61  YEKKIEECRVKTEEAKARTVADDEMDILEKEVEEELREEHLLMEEIR 106

[Close]

BLAST of Tan0010064 vs. ExPASy TrEMBL
Match: A0A6J1CR83 (uncharacterized protein LOC111013852 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111013852 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 4.7e-44
Identity = 97/107 (90.65%), Postives = 104/107 (97.20%), Query Frame = 0


Query: 1   MGDFSGKMNIEELLSYGDDLVAFLKDQKDVQTLNQCLEHVKALQSSCDDDFSNVHSSVQD 60
           MGDFSGK+NIEELLSYG+DLVA LKDQKDVQTLNQCLEHVKALQS CDDDFSNVHSSVQD
Sbjct: 1   MGDFSGKINIEELLSYGNDLVALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQD 60

Query: 61  YKKKIEACRQKSEEAKARTVADDEMDILEKELEEELRKENLLMEEIR 108
           Y+KKIEACRQK+EEAKARTVAD EMD+LE+ELEEELRKE+LLMEEIR
Sbjct: 61  YEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKEHLLMEEIR 107

[Close]

BLAST of Tan0010064 vs. ExPASy TrEMBL
Match: A0A6J1CQL9 (uncharacterized protein LOC111013852 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111013852 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 7.0e-40
Identity = 92/107 (85.98%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 1   MGDFSGKMNIEELLSYGDDLVAFLKDQKDVQTLNQCLEHVKALQSSCDDDFSNVHSSVQD 60
           MGDFSGK+NIEELLSYG+DLVA LKDQKDVQTLNQCLEHVKALQS CDDDFSNVH    +
Sbjct: 1   MGDFSGKINIEELLSYGNDLVALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVH----N 60

Query: 61  YKKKIEACRQKSEEAKARTVADDEMDILEKELEEELRKENLLMEEIR 108
           Y+KKIEACRQK+EEAKARTVAD EMD+LE+ELEEELRKE+LLMEEIR
Sbjct: 61  YEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKEHLLMEEIR 103

[Close]

BLAST of Tan0010064 vs. ExPASy TrEMBL
Match: A0A6J1F034 (uncharacterized protein LOC111438184 OS=Cucurbita moschata OX=3662 GN=LOC111438184 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 5.9e-39
Identity = 89/107 (83.18%), Postives = 97/107 (90.65%), Query Frame = 0


Query: 1   MGDFSGKMNIEELLSYGDDLVAFLKDQKDVQTLNQCLEHVKALQSSCDDDFSNVHSSVQD 60
           MGDFSGKMNIE+LLSYGDDLVA LKDQ DVQTLNQCL+H  ALQSS  DD  NVHSSVQD
Sbjct: 1   MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQD 60

Query: 61  YKKKIEACRQKSEEAKARTVADDEMDILEKELEEELRKENLLMEEIR 108
           Y+KKIE CR K+EEAKARTVADDEMDILEKE+EEE+R+E+LLMEEIR
Sbjct: 61  YEKKIEECRVKTEEAKARTVADDEMDILEKEIEEEVREEHLLMEEIR 107

[Close]

BLAST of Tan0010064 vs. ExPASy TrEMBL
Match: A0A6J1HU69 (uncharacterized protein LOC111466216 OS=Cucurbita maxima OX=3661 GN=LOC111466216 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.3e-38
Identity = 90/107 (84.11%), Postives = 97/107 (90.65%), Query Frame = 0


Query: 1   MGDFSGKMNIEELLSYGDDLVAFLKDQKDVQTLNQCLEHVKALQSSCDDDFSNVHSSVQD 60
           MGDFSGKMNIEELLSYG+DLV  LKDQ DVQTLNQCL+H  ALQSSC DDFSNVH  VQD
Sbjct: 1   MGDFSGKMNIEELLSYGNDLVVLLKDQNDVQTLNQCLQHFNALQSSCHDDFSNVH-LVQD 60

Query: 61  YKKKIEACRQKSEEAKARTVADDEMDILEKELEEELRKENLLMEEIR 108
           Y+KKIE CR K+EEAKARTVADDEMDILEKE+EEELR+E+LLMEEIR
Sbjct: 61  YEKKIEECRVKTEEAKARTVADDEMDILEKEVEEELREEHLLMEEIR 106

[Close]

BLAST of Tan0010064 vs. ExPASy TrEMBL
Match: A0A6J1IPN8 (uncharacterized protein LOC111478320 OS=Cucurbita maxima OX=3661 GN=LOC111478320 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.9e-38
Identity = 89/107 (83.18%), Postives = 94/107 (87.85%), Query Frame = 0


Query: 1   MGDFSGKMNIEELLSYGDDLVAFLKDQKDVQTLNQCLEHVKALQSSCDDDFSNVHSSVQD 60
           M DF+GK NIEE+LSYGDDLVA L DQ DVQTLNQCLEH K LQSSC DDFSNV SSVQD
Sbjct: 1   MADFAGKFNIEEILSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSCFDDFSNVQSSVQD 60

Query: 61  YKKKIEACRQKSEEAKARTVADDEMDILEKELEEELRKENLLMEEIR 108
           Y+KKIEACRQK+EEAKA TVADDE+DILEKEL EEL K NLLMEEIR
Sbjct: 61  YEKKIEACRQKTEEAKASTVADDEIDILEKELGEELGKGNLLMEEIR 107

[Close]

BLAST of Tan0010064 vs. TAIR 10
Match: AT3G08880.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01570.1); Has 177 Blast hits to 175 proteins in 60 species: Archae - 4; Bacteria - 33; Metazoa - 18; Fungi - 11; Plants - 59; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink). )

HSP 1 Score: 85.5 bits (210), Expect = 2.8e-17
Identity = 44/107 (41.12%), Postives = 72/107 (67.29%), Query Frame = 0


Query: 1   MGDFSGKMNIEELLSYGDDLVAFLKDQKDVQTLNQCLEHVKALQSSCDDDFSNVHSSVQD 60
           MG+ S   +IE+L+SYGDDL+  L  +     ++Q  E  KAL  +C +DF+ +  S++D
Sbjct: 1   MGNASENFDIEDLMSYGDDLINLLNVKNGFDIISQSSEQFKALNFACHEDFNQIQGSIED 60

Query: 61  YKKKIEACRQKSEEAKARTVADDEMDILEKELEEELRKENLLMEEIR 108
            K K+ AC++K+EEA +   A+DE++ L+KEL+EE+ +E  L +E+R
Sbjct: 61  CKTKLYACKKKTEEAYSDIAAEDEIERLQKELDEEMEREFKLKDELR 107

[Close]

BLAST of Tan0010064 vs. TAIR 10
Match: AT5G01570.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G08880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 85.5 bits (210), Expect = 2.8e-17
Identity = 42/99 (42.42%), Postives = 69/99 (69.70%), Query Frame = 0


Query: 9   NIEELLSYGDDLVAFLKDQKDVQTLNQCLEHVKALQSSCDDDFSNVHSSVQDYKKKIEAC 68
           N E ++S+GD+L+  L D+K    L Q LE ++A+  SCD+DF  +H S+QD +KK++ C
Sbjct: 7   NFEMVISWGDELIHVLDDRKGFDVLVQTLEQLRAIPFSCDEDFKEIHESLQDLQKKLDVC 66

Query: 69  RQKSEEAKARTVADDEMDILEKELEEELRKENLLMEEIR 108
           ++K++EA +    ++E++ L+KEL+EEL  E  L EE+R
Sbjct: 67  KEKTDEANSEIADEEEIERLQKELDEELELECKLKEELR 105

The following BLAST results are available for this feature:

BLAST of Tan0010064 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q67XT3	4.0e-16	41.12	Kinetochore protein SPC24 homolog OS=Arabidopsis thaliana OX=3702 GN=SPC24 PE=1 ...	[more]

BLAST of Tan0010064 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144074.1	9.7e-44	90.65	uncharacterized protein LOC111013852 isoform X1 [Momordica charantia]	[more]
XP_022144075.1	1.4e-39	85.98	uncharacterized protein LOC111013852 isoform X2 [Momordica charantia]	[more]
XP_023518318.1	7.2e-39	83.18	uncharacterized protein LOC111781837 [Cucurbita pepo subsp. pepo]	[more]
XP_022931907.1	1.2e-38	83.18	uncharacterized protein LOC111438184 [Cucurbita moschata] >XP_022931908.1 unchar...	[more]
XP_022966574.1	2.7e-38	84.11	uncharacterized protein LOC111466216 [Cucurbita maxima]	[more]

BLAST of Tan0010064 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CR83	4.7e-44	90.65	uncharacterized protein LOC111013852 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1CQL9	7.0e-40	85.98	uncharacterized protein LOC111013852 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1F034	5.9e-39	83.18	uncharacterized protein LOC111438184 OS=Cucurbita moschata OX=3662 GN=LOC1114381...	[more]
A0A6J1HU69	1.3e-38	84.11	uncharacterized protein LOC111466216 OS=Cucurbita maxima OX=3661 GN=LOC111466216...	[more]
A0A6J1IPN8	2.9e-38	83.18	uncharacterized protein LOC111478320 OS=Cucurbita maxima OX=3661 GN=LOC111478320...	[more]

BLAST of Tan0010064 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G08880.1	2.8e-17	41.12	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G01570.1	2.8e-17	42.42	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 58..107
None	No IPR available	PANTHER	PTHR35730:SF2	KINETOCHORE PROTEIN SPC24 HOMOLOG-RELATED	coord: 1..107
IPR044951	Kinetochore protein SPC24-like	PANTHER	PTHR35730	KINETOCHORE PROTEIN SPC24 HOMOLOG-RELATED	coord: 1..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0010064.1	Tan0010064.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051983	regulation of chromosome segregation