Tan0009801 (gene) Snake gourd v1

Overview


Name	Tan0009801
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Reverse transcriptase
Location	LG04: 36908153 .. 36908521 (-)
RNA-Seq Expression	Tan0009801
Synteny	Tan0009801

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTATAATAGAATATGAGAAGAAGTTCACAGAGTTATCAAAGTATGCTAGCACTATTGTTGCAAGCGAGATAGATCGATGCAAAAGGTTCGAGGATGGTTTACGAGCAGAGATCCGAACACCTGTGACTGCAAGTTCTAAGTGGGCTGAGTTCTCCAAGCTTGTGGAGACGGCATTACGAGTAGAGCGAAGCCTAGTAGATGACAGAATGGGAAAAGGAGCTGTAGGTGGTGGTCATACCACTTATTCTGTTGGTTTACCACGAGACCGATTCCAACGAGGAGATAATAGGAGATTCACTCCAGGTATCTCTGGAAAAGGAAGCTTTAAACCCCATCGTGGTGGGCAAACTACTCCAAGGATCTGA

mRNA sequence

ATGACTATAATAGAATATGAGAAGAAGTTCACAGAGTTATCAAAGTATGCTAGCACTATTGTTGCAAGCGAGATAGATCGATGCAAAAGGTTCGAGGATGGTTTACGAGCAGAGATCCGAACACCTGTGACTGCAAGTTCTAAGTGGGCTGAGTTCTCCAAGCTTGTGGAGACGGCATTACGAGTAGAGCGAAGCCTAGTAGATGACAGAATGGGAAAAGGAGCTGTAGGTGGTGGTCATACCACTTATTCTGTTGGTTTACCACGAGACCGATTCCAACGAGGAGATAATAGGAGATTCACTCCAGGTATCTCTGGAAAAGGAAGCTTTAAACCCCATCGTGGTGGGCAAACTACTCCAAGGATCTGA

Coding sequence (CDS)

ATGACTATAATAGAATATGAGAAGAAGTTCACAGAGTTATCAAAGTATGCTAGCACTATTGTTGCAAGCGAGATAGATCGATGCAAAAGGTTCGAGGATGGTTTACGAGCAGAGATCCGAACACCTGTGACTGCAAGTTCTAAGTGGGCTGAGTTCTCCAAGCTTGTGGAGACGGCATTACGAGTAGAGCGAAGCCTAGTAGATGACAGAATGGGAAAAGGAGCTGTAGGTGGTGGTCATACCACTTATTCTGTTGGTTTACCACGAGACCGATTCCAACGAGGAGATAATAGGAGATTCACTCCAGGTATCTCTGGAAAAGGAAGCTTTAAACCCCATCGTGGTGGGCAAACTACTCCAAGGATCTGA

Protein sequence

MTIIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASSKWAEFSKLVETALRVERSLVDDRMGKGAVGGGHTTYSVGLPRDRFQRGDNRRFTPGISGKGSFKPHRGGQTTPRI

Homology

[Close]

BLAST of Tan0009801 vs. NCBI nr
Match: KAA0060484.1 (Gag protease polyprotein-like protein [Cucumis melo var. makuwa] >TYK18569.1 Gag protease polyprotein-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 118.2 bits (295), Expect = 4.8e-23
Identity = 60/118 (50.85%), Postives = 82/118 (69.49%), Query Frame = 0


Query: 1   MTIIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASSKWAEFSKLVETAL 60
           MTI EYEKK+TELS YA+ ++  E++RCKRFE+GLR EIRTPVTA + W +FSKLVE AL
Sbjct: 162 MTIAEYEKKYTELSMYATRVIEDEVERCKRFEEGLREEIRTPVTACADWNDFSKLVEAAL 221

Query: 61  RVERSLVDDRMGKGAVGGGHTTYSVGLPRDRFQRGDNRRFTPGISGKGSFKPHRGGQT 119
           RVE+SL ++R  +        T+S  + R+R  +  + RF PG+S +G+FK    G +
Sbjct: 222 RVEKSL-NERKQERETSKNVCTFSSSMHRNRQGKERSGRFVPGVSSRGNFKSQYNGSS 278

[Close]

BLAST of Tan0009801 vs. NCBI nr
Match: KAA0035138.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 117.5 bits (293), Expect = 8.2e-23
Identity = 64/124 (51.61%), Postives = 83/124 (66.94%), Query Frame = 0


Query: 1   MTIIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASSKWAEFSKLVETAL 60
           +++ EYEKK+TELS+YA  IVASE DRC+RFE GLR EIRTPVTA +KW  FS+LVETAL
Sbjct: 208 LSVAEYEKKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTAIAKWTNFSQLVETAL 267

Query: 61  RVERSLVDDRMGKGAVGGGHTTYSVGLPRDRFQRGDNRRFTPG--ISGKGSFKPHRGGQT 120
           RVE+S+ +++       G  TT       + F+  + RRFTPG  IS +  FK   GGQ 
Sbjct: 268 RVEQSITEEKSAVELSRGTSTT-------NGFRGREQRRFTPGINISSRQDFKNRSGGQA 324

Query: 121 TPRI 123
           +  +
Sbjct: 328 SRNV 324

[Close]

BLAST of Tan0009801 vs. NCBI nr
Match: KAA0036813.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 115.5 bits (288), Expect = 3.1e-22
Identity = 60/118 (50.85%), Postives = 81/118 (68.64%), Query Frame = 0


Query: 1   MTIIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASSKWAEFSKLVETAL 60
           MT+ EYEKK+TELSKYA+ ++  E +RCKRFE+GLR EIRTPVTA + W +FSKLVE AL
Sbjct: 140 MTVAEYEKKYTELSKYATRVIVDEGERCKRFEEGLREEIRTPVTACADWNDFSKLVEVAL 199

Query: 61  RVERSLVDDRMGKGAVGGGHTTYSVGLPRDRFQRGDNRRFTPGISGKGSFKPHRGGQT 119
           RVE+SL ++R  +        T+S  + R+R  +  + RF P +S +GSFK    G +
Sbjct: 200 RVEKSL-NERKREREASKNLRTFSSSMHRNRPGKERSGRFVPRVSSRGSFKSQYSGSS 256

[Close]

BLAST of Tan0009801 vs. NCBI nr
Match: TYJ95881.1 (retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa])

HSP 1 Score: 115.5 bits (288), Expect = 3.1e-22
Identity = 60/118 (50.85%), Postives = 81/118 (68.64%), Query Frame = 0


Query: 1   MTIIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASSKWAEFSKLVETAL 60
           MT+ EYEKK+TELSKYA+ ++  E +RCKRFE+GLR EIRTPVTA + W +FSKLVE AL
Sbjct: 174 MTVAEYEKKYTELSKYATRVIVDEGERCKRFEEGLREEIRTPVTACADWNDFSKLVEVAL 233

Query: 61  RVERSLVDDRMGKGAVGGGHTTYSVGLPRDRFQRGDNRRFTPGISGKGSFKPHRGGQT 119
           RVE+SL ++R  +        T+S  + R+R  +  + RF P +S +GSFK    G +
Sbjct: 234 RVEKSL-NERKREREASKNLRTFSSSMHRNRPGKERSGRFVPRVSSRGSFKSQYSGSS 290

[Close]

BLAST of Tan0009801 vs. NCBI nr
Match: KAA0042193.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 114.8 bits (286), Expect = 5.3e-22
Identity = 58/118 (49.15%), Postives = 81/118 (68.64%), Query Frame = 0


Query: 1   MTIIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASSKWAEFSKLVETAL 60
           MT++EYEK +TELSKYA++++  E  RCKRF++GLR EIRTPV AS+ W +F KLVE AL
Sbjct: 1   MTVVEYEKNYTELSKYATSVIEDEAGRCKRFKEGLRKEIRTPVPASAHWNDFFKLVEAAL 60

Query: 61  RVERSLVDDRMGKGAVGGGHTTYSVGLPRDRFQRGDNRRFTPGISGKGSFKPHRGGQT 119
           RVE+SL ++R  +        T+S  + R+R  +G +  F PG+S KG+FK    G +
Sbjct: 61  RVEKSL-NERKHEREASKNVRTFSSSIHRNRPGKGRSGSFVPGVSNKGNFKSQFSGSS 117

[Close]

BLAST of Tan0009801 vs. ExPASy TrEMBL
Match: A0A5A7UZM6 (Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00750 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.3e-23
Identity = 60/118 (50.85%), Postives = 82/118 (69.49%), Query Frame = 0


Query: 1   MTIIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASSKWAEFSKLVETAL 60
           MTI EYEKK+TELS YA+ ++  E++RCKRFE+GLR EIRTPVTA + W +FSKLVE AL
Sbjct: 162 MTIAEYEKKYTELSMYATRVIEDEVERCKRFEEGLREEIRTPVTACADWNDFSKLVEAAL 221

Query: 61  RVERSLVDDRMGKGAVGGGHTTYSVGLPRDRFQRGDNRRFTPGISGKGSFKPHRGGQT 119
           RVE+SL ++R  +        T+S  + R+R  +  + RF PG+S +G+FK    G +
Sbjct: 222 RVEKSL-NERKQERETSKNVCTFSSSMHRNRQGKERSGRFVPGVSSRGNFKSQYNGSS 278

[Close]

BLAST of Tan0009801 vs. ExPASy TrEMBL
Match: A0A5A7SX06 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57G002230 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 4.0e-23
Identity = 64/124 (51.61%), Postives = 83/124 (66.94%), Query Frame = 0


Query: 1   MTIIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASSKWAEFSKLVETAL 60
           +++ EYEKK+TELS+YA  IVASE DRC+RFE GLR EIRTPVTA +KW  FS+LVETAL
Sbjct: 208 LSVAEYEKKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTAIAKWTNFSQLVETAL 267

Query: 61  RVERSLVDDRMGKGAVGGGHTTYSVGLPRDRFQRGDNRRFTPG--ISGKGSFKPHRGGQT 120
           RVE+S+ +++       G  TT       + F+  + RRFTPG  IS +  FK   GGQ 
Sbjct: 268 RVEQSITEEKSAVELSRGTSTT-------NGFRGREQRRFTPGINISSRQDFKNRSGGQA 324

Query: 121 TPRI 123
           +  +
Sbjct: 328 SRNV 324

[Close]

BLAST of Tan0009801 vs. ExPASy TrEMBL
Match: A0A5D3BB91 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001760 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.5e-22
Identity = 60/118 (50.85%), Postives = 81/118 (68.64%), Query Frame = 0


Query: 1   MTIIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASSKWAEFSKLVETAL 60
           MT+ EYEKK+TELSKYA+ ++  E +RCKRFE+GLR EIRTPVTA + W +FSKLVE AL
Sbjct: 174 MTVAEYEKKYTELSKYATRVIVDEGERCKRFEEGLREEIRTPVTACADWNDFSKLVEVAL 233

Query: 61  RVERSLVDDRMGKGAVGGGHTTYSVGLPRDRFQRGDNRRFTPGISGKGSFKPHRGGQT 119
           RVE+SL ++R  +        T+S  + R+R  +  + RF P +S +GSFK    G +
Sbjct: 234 RVEKSL-NERKREREASKNLRTFSSSMHRNRPGKERSGRFVPRVSSRGSFKSQYSGSS 290

[Close]

BLAST of Tan0009801 vs. ExPASy TrEMBL
Match: A0A5A7T1M0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G001070 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.5e-22
Identity = 60/118 (50.85%), Postives = 81/118 (68.64%), Query Frame = 0


Query: 1   MTIIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASSKWAEFSKLVETAL 60
           MT+ EYEKK+TELSKYA+ ++  E +RCKRFE+GLR EIRTPVTA + W +FSKLVE AL
Sbjct: 140 MTVAEYEKKYTELSKYATRVIVDEGERCKRFEEGLREEIRTPVTACADWNDFSKLVEVAL 199

Query: 61  RVERSLVDDRMGKGAVGGGHTTYSVGLPRDRFQRGDNRRFTPGISGKGSFKPHRGGQT 119
           RVE+SL ++R  +        T+S  + R+R  +  + RF P +S +GSFK    G +
Sbjct: 200 RVEKSL-NERKREREASKNLRTFSSSMHRNRPGKERSGRFVPRVSSRGSFKSQYSGSS 256

[Close]

BLAST of Tan0009801 vs. ExPASy TrEMBL
Match: A0A5A7TG44 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G006940 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.6e-22
Identity = 58/118 (49.15%), Postives = 81/118 (68.64%), Query Frame = 0


Query: 1   MTIIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASSKWAEFSKLVETAL 60
           MT++EYEK +TELSKYA++++  E  RCKRF++GLR EIRTPV AS+ W +F KLVE AL
Sbjct: 1   MTVVEYEKNYTELSKYATSVIEDEAGRCKRFKEGLRKEIRTPVPASAHWNDFFKLVEAAL 60

Query: 61  RVERSLVDDRMGKGAVGGGHTTYSVGLPRDRFQRGDNRRFTPGISGKGSFKPHRGGQT 119
           RVE+SL ++R  +        T+S  + R+R  +G +  F PG+S KG+FK    G +
Sbjct: 61  RVEKSL-NERKHEREASKNVRTFSSSIHRNRPGKGRSGSFVPGVSNKGNFKSQFSGSS 117

The following BLAST results are available for this feature:

BLAST of Tan0009801 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0009801 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060484.1	4.8e-23	50.85	Gag protease polyprotein-like protein [Cucumis melo var. makuwa] >TYK18569.1 Gag...	[more]
KAA0035138.1	8.2e-23	51.61	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0036813.1	3.1e-22	50.85	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
TYJ95881.1	3.1e-22	50.85	retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]	[more]
KAA0042193.1	5.3e-22	49.15	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]

BLAST of Tan0009801 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UZM6	2.3e-23	50.85	Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5A7SX06	4.0e-23	51.61	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3BB91	1.5e-22	50.85	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7T1M0	1.5e-22	50.85	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20...	[more]
A0A5A7TG44	2.6e-22	49.15	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of Tan0009801 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0009801.1	Tan0009801.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process