Tan0009415 (gene) Snake gourd v1

Overview


Name	Tan0009415
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Transcription initiation factor TFIID subunit 11 isoform X3
Location	LG11: 13908148 .. 13909343 (-)
RNA-Seq Expression	Tan0009415
Synteny	Tan0009415

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGTTATTAACTCCTCCCAATTCCACCCAAGTCTTCAATCCAAACGGCCCTCATTAATGCCGTTACAAAGGTCTTTTGTGGAGTATAATGGTAATTTCACATCCAATTTACAATATCAATGGCTGAAATTGCCAAAATCGACAGATGAATTAGGAGAAGAAGAAGAACAGCAAAGTAGACCAGAAAAGAAATGAATTCCAGAAAGAAGATAGGAAGCGGCAACGACGACGAACAAGTTGAGCAATTGCTGCAAGCGGCTCAGGACGATCTCATGCTGAAATTGAGCGTCGATTCCCACATGTCGCGTGTATCACCAAACTATCTCGATTCCGATCTCGATCGCCGATTCCAAGCCCTAAGATCGCGACCTTCCTCCACCGCCGCCGCTCCCCGCAATCCCCGCCCTTCTCAGCCGCCGCTTCACTCCTATTCGTCGTCCAGGCCGCCGGCGATTGAAAACCTTGTCGTTGATGGCGAATCTCAGTCGCTTCTCGGTGAGGATCTCGCTGCTAGATTCGCTGCTCTGAAGGCGTCTTTGCCTTCCTCGATTACTCCGCCTCCGTCGTCAATACCTAACGATGTTGATAGCGATGATGAAGAGGACGAGGTTGAGAAGTTGATTCAGTGGGCTAAGGATGCCGCTCGTCTCGATCCTTCGCCTCCATCTGACGAAGACGATGAAGCCGATGGAGACGATGACGACGAATCGAATAGTTCCGATGAAGATTTCGACGATCGGAGAAAAGAGCGTAGGAAGAAGAAGGCCGCGTGAGCGTTAATCCGCTGTATCCGCATTCGATTTACTGATTATTTGGGATTTAGAAATTCAAGATTCAAACAGTGGATGCTGTCCGGATTTTGGTTGAACTGGATCGCGAGAAGGTAGGGTTCACCGGCACGGCGTCTGATTGCCATTTTCGCCGCCATTACAGTTCAAAACTCTGAATCTTCAAATAACATTTTCCGTTGCTTAATCGATTCTTCACTGTTCTAATTTCATTTTTATCTCCCAACAGATAAACGATTGCATTATTTTAGTTAGGAATGTGGAGTTGGATATTAAAGAAATGCCGATTTCTTTCTTTATGTGGAGATGAAATGTTGAGTTTGTGGCATGTGTCCATCGAGATAAATCATTGGATGAGACGACACAATTAAACTATAACTATTGAATAAATTTGAGATTTTTTTTTTCG

mRNA sequence

GCGTTATTAACTCCTCCCAATTCCACCCAAGTCTTCAATCCAAACGGCCCTCATTAATGCCGTTACAAAGGTCTTTTGTGGAGTATAATGGTAATTTCACATCCAATTTACAATATCAATGGCTGAAATTGCCAAAATCGACAGATGAATTAGGAGAAGAAGAAGAACAGCAAAGTAGACCAGAAAAGAAATGAATTCCAGAAAGAAGATAGGAAGCGGCAACGACGACGAACAAGTTGAGCAATTGCTGCAAGCGGCTCAGGACGATCTCATGCTGAAATTGAGCGTCGATTCCCACATGTCGCGTGTATCACCAAACTATCTCGATTCCGATCTCGATCGCCGATTCCAAGCCCTAAGATCGCGACCTTCCTCCACCGCCGCCGCTCCCCGCAATCCCCGCCCTTCTCAGCCGCCGCTTCACTCCTATTCGTCGTCCAGGCCGCCGGCGATTGAAAACCTTGTCGTTGATGGCGAATCTCAGTCGCTTCTCGGTGAGGATCTCGCTGCTAGATTCGCTGCTCTGAAGGCGTCTTTGCCTTCCTCGATTACTCCGCCTCCGTCGTCAATACCTAACGATGTTGATAGCGATGATGAAGAGGACGAGGTTGAGAAGTTGATTCAGTGGGCTAAGGATGCCGCTCGTCTCGATCCTTCGCCTCCATCTGACGAAGACGATGAAGCCGATGGAGACGATGACGACGAATCGAATAGTTCCGATGAAGATTTCGACGATCGGAGAAAAGAGCGTAGGAAGAAGAAGGCCGCGTGAGCGTTAATCCGCTGTATCCGCATTCGATTTACTGATTATTTGGGATTTAGAAATTCAAGATTCAAACAGTGGATGCTGTCCGGATTTTGGTTGAACTGGATCGCGAGAAGGTAGGGTTCACCGGCACGGCGTCTGATTGCCATTTTCGCCGCCATTACAGTTCAAAACTCTGAATCTTCAAATAACATTTTCCGTTGCTTAATCGATTCTTCACTGTTCTAATTTCATTTTTATCTCCCAACAGATAAACGATTGCATTATTTTAGTTAGGAATGTGGAGTTGGATATTAAAGAAATGCCGATTTCTTTCTTTATGTGGAGATGAAATGTTGAGTTTGTGGCATGTGTCCATCGAGATAAATCATTGGATGAGACGACACAATTAAACTATAACTATTGAATAAATTTGAGATTTTTTTTTTCG

Coding sequence (CDS)

ATGAATTCCAGAAAGAAGATAGGAAGCGGCAACGACGACGAACAAGTTGAGCAATTGCTGCAAGCGGCTCAGGACGATCTCATGCTGAAATTGAGCGTCGATTCCCACATGTCGCGTGTATCACCAAACTATCTCGATTCCGATCTCGATCGCCGATTCCAAGCCCTAAGATCGCGACCTTCCTCCACCGCCGCCGCTCCCCGCAATCCCCGCCCTTCTCAGCCGCCGCTTCACTCCTATTCGTCGTCCAGGCCGCCGGCGATTGAAAACCTTGTCGTTGATGGCGAATCTCAGTCGCTTCTCGGTGAGGATCTCGCTGCTAGATTCGCTGCTCTGAAGGCGTCTTTGCCTTCCTCGATTACTCCGCCTCCGTCGTCAATACCTAACGATGTTGATAGCGATGATGAAGAGGACGAGGTTGAGAAGTTGATTCAGTGGGCTAAGGATGCCGCTCGTCTCGATCCTTCGCCTCCATCTGACGAAGACGATGAAGCCGATGGAGACGATGACGACGAATCGAATAGTTCCGATGAAGATTTCGACGATCGGAGAAAAGAGCGTAGGAAGAAGAAGGCCGCGTGA

Protein sequence

MNSRKKIGSGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSTAAAPRNPRPSQPPLHSYSSSRPPAIENLVVDGESQSLLGEDLAARFAALKASLPSSITPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSDEDDEADGDDDDESNSSDEDFDDRRKERRKKKAA

Homology

[Close]

BLAST of Tan0009415 vs. NCBI nr
Match: KAG7016610.1 (hypothetical protein SDJN02_21720, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 297.4 bits (760), Expect = 9.2e-77
Identity = 170/190 (89.47%), Postives = 178/190 (93.68%), Query Frame = 0


Query: 5   KKIGSGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSST- 64
           +K+GSGN+DEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSS+ 
Sbjct: 18  RKMGSGNEDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSSA 77

Query: 65  AAAPRNPRPSQPPLHSYSSSRPPAIENLVVDGESQSLLGEDLAARFAALKASLPSSITPP 124
           AAA RNPRPSQP   S SSSRPP IENLVVDGESQS+LG+DLAARFAALKASLPSSITPP
Sbjct: 78  AAASRNPRPSQPHHQSDSSSRPPPIENLVVDGESQSILGDDLAARFAALKASLPSSITPP 137

Query: 125 PSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSDEDDEADGDDDDES-NSSDEDFDD 184
           PSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPS+EDDE D DDDDE  NSSDED DD
Sbjct: 138 PSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDEDDEDDDDEEFNSSDEDIDD 197

Query: 185 RRKERRKKKA 193
           R+KERRKKKA
Sbjct: 198 RKKERRKKKA 207

[Close]

BLAST of Tan0009415 vs. NCBI nr
Match: XP_022939254.1 (nucleolin [Cucurbita moschata])

HSP 1 Score: 295.4 bits (755), Expect = 3.5e-76
Identity = 167/188 (88.83%), Postives = 175/188 (93.09%), Query Frame = 0


Query: 5   KKIGSGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSTA 64
           +K+ SGN+DEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSS A
Sbjct: 19  RKMESGNEDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSAA 78

Query: 65  AAPRNPRPSQPPLHSYSSSRPPAIENLVVDGESQSLLGEDLAARFAALKASLPSSITPPP 124
           AA RNPRPSQP   S SSSRPP IENLVVDGESQS+LG+DLAARFAALKASLPSSITPPP
Sbjct: 79  AASRNPRPSQPHHQSDSSSRPPPIENLVVDGESQSILGDDLAARFAALKASLPSSITPPP 138

Query: 125 SSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSDEDDEADGDDDDESNSSDEDFDDRR 184
           SSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPS+EDDE   DDD+E NSSDED DDR+
Sbjct: 139 SSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDE--DDDDEEFNSSDEDIDDRK 198

Query: 185 KERRKKKA 193
           KERRKKKA
Sbjct: 199 KERRKKKA 204

[Close]

BLAST of Tan0009415 vs. NCBI nr
Match: XP_023550367.1 (nucleolin [Cucurbita pepo subsp. pepo])

HSP 1 Score: 293.1 bits (749), Expect = 1.7e-75
Identity = 167/189 (88.36%), Postives = 174/189 (92.06%), Query Frame = 0


Query: 5   KKIGSGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSTA 64
           +K+GSGN+DEQVEQLLQAAQDDLMLK SVDSHMSRVSPNYLDSDLDRRFQALRSRPSS A
Sbjct: 19  RKMGSGNEDEQVEQLLQAAQDDLMLKFSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSAA 78

Query: 65  AAPRNPRPSQPPLHSYSSSRPPAIENLVVDGESQSLLGEDLAARFAALKASLPSSITPPP 124
           AA RNPRPSQ    S SSSRPP IENLVVDGESQS+LG+DLAARFAALKASLPSSITPPP
Sbjct: 79  AASRNPRPSQLHHQSDSSSRPPPIENLVVDGESQSILGDDLAARFAALKASLPSSITPPP 138

Query: 125 SSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSDEDDEADGDDDDES-NSSDEDFDDR 184
           SSI NDVDSDDEEDEVEKLIQWAKDAARLDPSPPS+EDDE D DDDDE  NSSDED DDR
Sbjct: 139 SSISNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDEDDEDDDDEEFNSSDEDIDDR 198

Query: 185 RKERRKKKA 193
           +KERRKKKA
Sbjct: 199 KKERRKKKA 207

[Close]

BLAST of Tan0009415 vs. NCBI nr
Match: KAG6579085.1 (hypothetical protein SDJN03_23533, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 292.4 bits (747), Expect = 3.0e-75
Identity = 168/193 (87.05%), Postives = 178/193 (92.23%), Query Frame = 0


Query: 5   KKIGSGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSST- 64
           +K+GSGN+DEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSS+ 
Sbjct: 18  RKMGSGNEDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSSA 77

Query: 65  AAAPRNPRPSQPPLHSYSSSRPPAIENLVVDGESQSLLGEDLAARFAALKASLPSSITPP 124
           AAA RNPRPSQP   S SSSRPP IENLVVDGESQS+LG+DLAARFAALKASLPSSITPP
Sbjct: 78  AAASRNPRPSQPHHQSDSSSRPPPIENLVVDGESQSILGDDLAARFAALKASLPSSITPP 137

Query: 125 PSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSDEDDEAD----GDDDDESNSSDED 184
           PSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPS+EDDE D     DDD+E +SSDED
Sbjct: 138 PSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDEDDEDDEDDDDEEFDSSDED 197

Query: 185 FDDRRKERRKKKA 193
            DDR+KERRKKKA
Sbjct: 198 IDDRKKERRKKKA 210

[Close]

BLAST of Tan0009415 vs. NCBI nr
Match: XP_022993807.1 (glucosidase 2 subunit beta [Cucurbita maxima])

HSP 1 Score: 291.6 bits (745), Expect = 5.0e-75
Identity = 168/189 (88.89%), Postives = 175/189 (92.59%), Query Frame = 0


Query: 5   KKIGSGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSTA 64
           +K+GSGN+DEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSS A
Sbjct: 19  RKMGSGNEDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSS-A 78

Query: 65  AAPRNPRPSQPPLHSYSSSRPPAIENLVVDGESQSLLGEDLAARFAALKASLPSSITPPP 124
           AA RNPR SQP   S SSSRPP IENLVVDGESQS+LG+DLAARFAALKASLPSSITPPP
Sbjct: 79  AACRNPRTSQPHHQSDSSSRPPPIENLVVDGESQSILGDDLAARFAALKASLPSSITPPP 138

Query: 125 SSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSDEDDEADGDDDDES-NSSDEDFDDR 184
           SSIPNDVDSDDEEDEVEKLIQWAKDA RLDPSPPS+EDDE D DDDDE  NSSDED DDR
Sbjct: 139 SSIPNDVDSDDEEDEVEKLIQWAKDAVRLDPSPPSEEDDEDDEDDDDEEFNSSDEDIDDR 198

Query: 185 RKERRKKKA 193
           +KERRKKKA
Sbjct: 199 KKERRKKKA 206

[Close]

BLAST of Tan0009415 vs. ExPASy TrEMBL
Match: A0A6J1FGM0 (nucleolin OS=Cucurbita moschata OX=3662 GN=LOC111445226 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.7e-76
Identity = 167/188 (88.83%), Postives = 175/188 (93.09%), Query Frame = 0


Query: 5   KKIGSGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSTA 64
           +K+ SGN+DEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSS A
Sbjct: 19  RKMESGNEDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSAA 78

Query: 65  AAPRNPRPSQPPLHSYSSSRPPAIENLVVDGESQSLLGEDLAARFAALKASLPSSITPPP 124
           AA RNPRPSQP   S SSSRPP IENLVVDGESQS+LG+DLAARFAALKASLPSSITPPP
Sbjct: 79  AASRNPRPSQPHHQSDSSSRPPPIENLVVDGESQSILGDDLAARFAALKASLPSSITPPP 138

Query: 125 SSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSDEDDEADGDDDDESNSSDEDFDDRR 184
           SSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPS+EDDE   DDD+E NSSDED DDR+
Sbjct: 139 SSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDE--DDDDEEFNSSDEDIDDRK 198

Query: 185 KERRKKKA 193
           KERRKKKA
Sbjct: 199 KERRKKKA 204

[Close]

BLAST of Tan0009415 vs. ExPASy TrEMBL
Match: A0A6J1JTW4 (glucosidase 2 subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111489706 PE=4 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 2.4e-75
Identity = 168/189 (88.89%), Postives = 175/189 (92.59%), Query Frame = 0


Query: 5   KKIGSGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSTA 64
           +K+GSGN+DEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSS A
Sbjct: 19  RKMGSGNEDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSS-A 78

Query: 65  AAPRNPRPSQPPLHSYSSSRPPAIENLVVDGESQSLLGEDLAARFAALKASLPSSITPPP 124
           AA RNPR SQP   S SSSRPP IENLVVDGESQS+LG+DLAARFAALKASLPSSITPPP
Sbjct: 79  AACRNPRTSQPHHQSDSSSRPPPIENLVVDGESQSILGDDLAARFAALKASLPSSITPPP 138

Query: 125 SSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSDEDDEADGDDDDES-NSSDEDFDDR 184
           SSIPNDVDSDDEEDEVEKLIQWAKDA RLDPSPPS+EDDE D DDDDE  NSSDED DDR
Sbjct: 139 SSIPNDVDSDDEEDEVEKLIQWAKDAVRLDPSPPSEEDDEDDEDDDDEEFNSSDEDIDDR 198

Query: 185 RKERRKKKA 193
           +KERRKKKA
Sbjct: 199 KKERRKKKA 206

[Close]

BLAST of Tan0009415 vs. ExPASy TrEMBL
Match: A0A6J1CIG2 (uncharacterized protein LOC111011897 OS=Momordica charantia OX=3673 GN=LOC111011897 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 3.1e-70
Identity = 162/195 (83.08%), Postives = 174/195 (89.23%), Query Frame = 0


Query: 1   MNSRKKI-GSGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSR 60
           M+ RKK  GSGNDDEQVEQLLQAAQDDLMLKL++DSHMSRVSPNYLDSDLDRRFQALRSR
Sbjct: 18  MDFRKKAGGSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSR 77

Query: 61  PSS-TAAAPRNPRPSQPPLHSYSSSRPPAIENLVVDGESQSLLGEDLAARFAALKASLPS 120
           PSS  AAAPRNPRPS+  L     S+PPAIENL VDGESQS+LG+DLA RFAALKASLPS
Sbjct: 78  PSSAAAAAPRNPRPSRSDL----PSKPPAIENLPVDGESQSILGDDLATRFAALKASLPS 137

Query: 121 SITPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSDEDDEADGDDDDESNSSDE 180
           S  PPPSS+PNDVDS+DEEDEVEKLIQWAKDAARLDPSPPSD+DD+   D DDES+SSDE
Sbjct: 138 STPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDDD---DGDDESSSSDE 197

Query: 181 DFDDRRKERRKKKAA 194
           D DDRRKERRKKKAA
Sbjct: 198 DADDRRKERRKKKAA 205

[Close]

BLAST of Tan0009415 vs. ExPASy TrEMBL
Match: A0A5D3CTC3 (Transcription initiation factor TFIID subunit 11 isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold790G00450 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 1.4e-67
Identity = 160/196 (81.63%), Postives = 171/196 (87.24%), Query Frame = 0


Query: 1   MNSRKKIGSGNDD--EQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRS 60
           M+SRKK G GNDD  EQ+EQLLQAAQDDLMLKL++DSHMSRVSPNYL SDLDRRFQALRS
Sbjct: 1   MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLTLDSHMSRVSPNYLHSDLDRRFQALRS 60

Query: 61  RPSSTAAA-PRNPRPSQPPLHSYSSSR-PPAIENLVVDGESQSLLGEDLAARFAALKASL 120
           RPSSTAAA PRNPR S P + S SSSR PP IENLVVDGESQS+LG+DLAARFAALKASL
Sbjct: 61  RPSSTAAAVPRNPRSSHPHIQSDSSSRPPPPIENLVVDGESQSILGDDLAARFAALKASL 120

Query: 121 PSSITPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSDEDDEADGDDDDESNSS 180
           PSS TPP SSIPNDVDS DEEDEVEKLIQWAKDAARLDPSPPS+EDDE     ++E  SS
Sbjct: 121 PSSTTPPSSSIPNDVDSADEEDEVEKLIQWAKDAARLDPSPPSEEDDE-----EEEFISS 180

Query: 181 DEDFDDRRKERRKKKA 193
           DED +DR KERRKKKA
Sbjct: 181 DEDVNDRIKERRKKKA 191

[Close]

BLAST of Tan0009415 vs. ExPASy TrEMBL
Match: A0A1S4E6L5 (uncharacterized protein LOC103502866 OS=Cucumis melo OX=3656 GN=LOC103502866 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 2.4e-67
Identity = 159/196 (81.12%), Postives = 171/196 (87.24%), Query Frame = 0


Query: 1   MNSRKKIGSGNDD--EQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRS 60
           M+SRKK G GNDD  EQ+EQLLQAAQDDL+LKL++DSHMSRVSPNYL SDLDRRFQALRS
Sbjct: 1   MDSRKKTGRGNDDEQEQIEQLLQAAQDDLILKLTLDSHMSRVSPNYLHSDLDRRFQALRS 60

Query: 61  RPSSTAAA-PRNPRPSQPPLHSYSSSR-PPAIENLVVDGESQSLLGEDLAARFAALKASL 120
           RPSSTAAA PRNPR S P + S SSSR PP IENLVVDGESQS+LG+DLAARFAALKASL
Sbjct: 61  RPSSTAAAVPRNPRSSHPHIQSDSSSRPPPPIENLVVDGESQSILGDDLAARFAALKASL 120

Query: 121 PSSITPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSDEDDEADGDDDDESNSS 180
           PSS TPP SSIPNDVDS DEEDEVEKLIQWAKDAARLDPSPPS+EDDE     ++E  SS
Sbjct: 121 PSSTTPPSSSIPNDVDSADEEDEVEKLIQWAKDAARLDPSPPSEEDDE-----EEEFISS 180

Query: 181 DEDFDDRRKERRKKKA 193
           DED +DR KERRKKKA
Sbjct: 181 DEDVNDRMKERRKKKA 191

[Close]

BLAST of Tan0009415 vs. TAIR 10
Match: AT4G24370.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 106.7 bits (265), Expect = 2.1e-23
Identity = 77/171 (45.03%), Postives = 98/171 (57.31%), Query Frame = 0


Query: 10  GNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSTAAAPRN 69
           G ++++VEQLLQAAQD+++LKLSVDSH SR S +YLD DL  RF AL+S+        + 
Sbjct: 5   GKEEDEVEQLLQAAQDEMILKLSVDSHTSRSSSDYLDPDLHSRFLALKSQKKKDQQQQQK 64

Query: 70  PRPSQPPLHSYSSSRPPAIENLVVDGESQSLLGEDLAARFAALKASLPSSITPP----PS 129
            RP   P         P                EDL  RFAALK SLPS+ +        
Sbjct: 65  QRPRMQPKSKDVVEETP----------------EDLMLRFAALKTSLPSASSSSSVLLQD 124

Query: 130 SIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSDEDDEADGDDDDESNSS 177
            I  D D   E+ EV+KLIQWA DAARLDPSP SD++   + D DDE++S+
Sbjct: 125 EIGEDGDEIGEDAEVDKLIQWAIDAARLDPSPSSDDEQSQNCDSDDENDST 159

The following BLAST results are available for this feature:

BLAST of Tan0009415 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0009415 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7016610.1	9.2e-77	89.47	hypothetical protein SDJN02_21720, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022939254.1	3.5e-76	88.83	nucleolin [Cucurbita moschata]	[more]
XP_023550367.1	1.7e-75	88.36	nucleolin [Cucurbita pepo subsp. pepo]	[more]
KAG6579085.1	3.0e-75	87.05	hypothetical protein SDJN03_23533, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022993807.1	5.0e-75	88.89	glucosidase 2 subunit beta [Cucurbita maxima]	[more]

BLAST of Tan0009415 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FGM0	1.7e-76	88.83	nucleolin OS=Cucurbita moschata OX=3662 GN=LOC111445226 PE=4 SV=1	[more]
A0A6J1JTW4	2.4e-75	88.89	glucosidase 2 subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111489706 PE=4 SV=1	[more]
A0A6J1CIG2	3.1e-70	83.08	uncharacterized protein LOC111011897 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A5D3CTC3	1.4e-67	81.63	Transcription initiation factor TFIID subunit 11 isoform X3 OS=Cucumis melo var....	[more]
A0A1S4E6L5	2.4e-67	81.12	uncharacterized protein LOC103502866 OS=Cucumis melo OX=3656 GN=LOC103502866 PE=...	[more]

BLAST of Tan0009415 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24370.1	2.1e-23	45.03	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 141..158
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 114..193
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 159..177

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0009415.1	Tan0009415.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
molecular_function	GO:0003743	translation initiation factor activity