Tan0009315 (gene) Snake gourd v1

Overview


Name	Tan0009315
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG04: 6840970 .. 6841937 (-)
RNA-Seq Expression	Tan0009315
Synteny	Tan0009315

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCATTGTCCGTATGGAGCCGTAATTGGAAACCCCTGTTATCCAATTGCAACTTGGGATTGGTTGGTCATAGCAGATAAGATTATCGATCACATAATCGAATCTCTCCAATCTACCAAGTGTCTTCTGGTCGCTGGATCTTCATAGGTCACATGCAATTGGATAACTTGGTCGATTATGAAGAATTATGGGTCCCCATTTGCAGCCACGTTCCCACCTCCATGCTGGAAAAAGCTTCACGGCTCCCTCGCCCACGTCACTCCCAAAAAGTGCCAAGATGTGGACCAATCTCTTCATCATCATCATGATAATAAAGGAAAGAACCAGGCTTCACTTCAGATTCAGAAACTCTACTTCTGTTCCTTTCCCAAGTCAGAATCCCAGCTGCATTTTCCCGTGTAAGATTTTTCTCTCACGGTTTCCCCAACTTAAAACACTAGTCAAAACACTCAGAACCCACCTTTTTGTTCAGTCTTCTTTAATGCCCACCGTCCTGAATTTCCTTACTTTTCTGGTTATTTGATGTGATTTCTCAATTGGGTCGATGCTGGTTTCTGCTCTTTCCATTTTGTTGGCTATGTTTTTCTGTTTGGATTCGAGGTTAACTTTGTGGAATATCTTTCAGACTGCTTGTTTGAGTTGAATCTTCTCTTGGTTTTGTTGTGTTTCTGAATTTTGTTTTGAATGATTTGCTCTTGTGTGGTTGGTATTGTGGTGGTTAAATTTTGATTCGATGTTTTGCTTGTGGAAGGGCTGCTTAGTTTAAGAGTTCATGAGTAACAAATAGGCTTCTTTGGTTTGAATTGTGATGAGTAAGTTGAGTTTTTGTGTCAAAACGTCATCCTGAATCTTGGAAAATAATGACAGGATACTTTTCGATGGAATCCAGCGGCTTCTACCCCGTTAAAGCGGATCGGCTCGGAAGAAGACCAGTTCAGTTGCCATTTAGACTTGCTCAAACATGA

mRNA sequence

ATGGTTCATTGTCCGTATGGAGCCGTAATTGGAAACCCCTGTTATCCAATTGCAACTTGGGATTGGTTGGTCACATGCAATTGGATAACTTGGTCGATTATGAAGAATTATGGGTCCCCATTTGCAGCCACGTTCCCACCTCCATGCTGGAAAAAGCTTCACGGCTCCCTCGCCCACGTCACTCCCAAAAAGTGCCAAGATGTGGACCAATCTCTTCATCATCATCATGATAATAAAGGAAAGAACCAGGCTTCACTTCAGATTCAGAAACTCTACTTCTGTTCCTTTCCCAAGTCAGAATCCCAGCTGCATTTTCCCGTCGGCTTCTACCCCGTTAAAGCGGATCGGCTCGGAAGAAGACCAGTTCAGTTGCCATTTAGACTTGCTCAAACATGA

Coding sequence (CDS)

ATGGTTCATTGTCCGTATGGAGCCGTAATTGGAAACCCCTGTTATCCAATTGCAACTTGGGATTGGTTGGTCACATGCAATTGGATAACTTGGTCGATTATGAAGAATTATGGGTCCCCATTTGCAGCCACGTTCCCACCTCCATGCTGGAAAAAGCTTCACGGCTCCCTCGCCCACGTCACTCCCAAAAAGTGCCAAGATGTGGACCAATCTCTTCATCATCATCATGATAATAAAGGAAAGAACCAGGCTTCACTTCAGATTCAGAAACTCTACTTCTGTTCCTTTCCCAAGTCAGAATCCCAGCTGCATTTTCCCGTCGGCTTCTACCCCGTTAAAGCGGATCGGCTCGGAAGAAGACCAGTTCAGTTGCCATTTAGACTTGCTCAAACATGA

Protein sequence

MVHCPYGAVIGNPCYPIATWDWLVTCNWITWSIMKNYGSPFAATFPPPCWKKLHGSLAHVTPKKCQDVDQSLHHHHDNKGKNQASLQIQKLYFCSFPKSESQLHFPVGFYPVKADRLGRRPVQLPFRLAQT

Homology

[Close]

BLAST of Tan0009315 vs. NCBI nr
Match: KAG7012996.1 (hypothetical protein SDJN02_25750, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 80.1 bits (196), Expect = 1.6e-11
Identity = 38/48 (79.17%), Postives = 40/48 (83.33%), Query Frame = 0


Query: 34 MKNYGSPFAATFPPPCWKKLHGSLAHVTPKKCQDVDQ-SLHHHHDNKG 81
          MKNYGSPFAAT PPP W KLHGSLAHVTP+KCQ VD  SLH + DNKG
Sbjct: 1  MKNYGSPFAATCPPPFWTKLHGSLAHVTPQKCQAVDPLSLHLYDDNKG 48

[Close]

BLAST of Tan0009315 vs. NCBI nr
Match: KGN52117.1 (hypothetical protein Csa_008869 [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 2.0e-11
Identity = 42/62 (67.74%), Postives = 47/62 (75.81%), Query Frame = 0


Query: 68  VDQSLHHHHDNKGKNQASLQIQKLYFCSFPKSESQLHFPVGFYPVKADRLGRRPVQLPFR 127
           VDQS     DNKGKNQAS+QI KL FCSF KSESQLHFPV F P+KA+RL R+ V   FR
Sbjct: 5   VDQSF-DDDDNKGKNQASVQIHKLPFCSFSKSESQLHFPVSFSPIKANRLRRKLVAFRFR 64

Query: 128 LA 130
           L+
Sbjct: 65  LS 65

[Close]

BLAST of Tan0009315 vs. ExPASy TrEMBL
Match: A0A0A0KUK8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G610510 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 9.9e-12
Identity = 42/62 (67.74%), Postives = 47/62 (75.81%), Query Frame = 0


Query: 68  VDQSLHHHHDNKGKNQASLQIQKLYFCSFPKSESQLHFPVGFYPVKADRLGRRPVQLPFR 127
           VDQS     DNKGKNQAS+QI KL FCSF KSESQLHFPV F P+KA+RL R+ V   FR
Sbjct: 5   VDQSF-DDDDNKGKNQASVQIHKLPFCSFSKSESQLHFPVSFSPIKANRLRRKLVAFRFR 64

Query: 128 LA 130
           L+
Sbjct: 65  LS 65

The following BLAST results are available for this feature:

BLAST of Tan0009315 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0009315 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7012996.1	1.6e-11	79.17	hypothetical protein SDJN02_25750, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KGN52117.1	2.0e-11	67.74	hypothetical protein Csa_008869 [Cucumis sativus]	[more]

BLAST of Tan0009315 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUK8	9.9e-12	67.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G610510 PE=4 SV=1	[more]

BLAST of Tan0009315 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0009315.1	Tan0009315.1	mRNA