Tan0009186 (gene) Snake gourd v1

Overview


Name	Tan0009186
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	UPF0426 protein At1g28150, chloroplastic
Location	LG09: 72462963 .. 72464657 (-)
RNA-Seq Expression	Tan0009186
Synteny	Tan0009186

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGGTCTTCTTCAACACTCCACTTCAACTGCCAGCGTTCTGGTACACCCAACCCTACTCTTTAATTGCTTTCGCTATTTTTCTATCACTGTCCTTTTCTTCGATATTATTGATTTTCCTCTTTGATTCTATTCAAAGTTTGGAGGAATGGGGAAATTAAGGGAACGGAATCATATCTCGATTTTATTATCCAAAAAACCTATGCTGCCACTGGCAGCTATCTTCTTCTCGCCTGCAATAGTTCTACAAATGGCATCTGCGCATTTTTCTTCAATCCTGCAGAGGATCTCGTTATCAAAGAAGCTCTCAAGGTATCCTAATAACTCTTACATGAAAAATCCTTCGTTTGTTTTGGCTGTTGAATAACAGTCTACTTTCTGCTTGGATTAAGGTAACTCTTGATTGCTGAGTATGTGCAATGGAGGATATAATTAATTCCCCACTGTATTCTCATAGCACTTAAAGACTGATTGTCTTCTATACTTGTTTGCCTCTTCGAGTAGATAACAATTATGGTCAGATTTCTACAAGTGCGAGTTAATGGATGGATCTAAAGATTTTGTAAGTTTCATAGACATCCGCCTATGAAGGACCATAGGTATTCAGGCTCATTGTACATGGTGGAATAGTTTCATAGACATCCGCCTGGTCATTTTTGTGAGAGGTGTAATAACAAGCAAATATTCATCTTTAAGTTGAGTTTAACAAGTCCAGTTATCAAAATTTTCATCTAGTTATGAGTATTTTTTCAAAAAAACTTTAAAATGTTTTTGGATGAATTAAAAAAGGTACCAAACTCACTCTTAATTGTAATGTAGTTATGGAAATAGATCTAAGCGTTGCTGACATTTTTTTCTGATGTGTTGGTCAATTCAATTTAACTGTTTGCCTGCTCCTGAGGTTTCTTTCTGATTTGGATGTAAAGGAAACTCAATTTAACTATTGTTCTACTTAAGATCAACATGTGCTAATCTTCAACTAACTATTGTTTCCTATAAAAAAGAAATCTCCAGCTAACTCAAAGGGAGAAAAGATTAAATGTATGTTTTGTGATCTTTCAACTGGAAGGTTATTTGTTGAGCAAAATGTGTAAAGATGTTTATAATCTGTAAACTCGCAAGTGATAGAAAACTTCAACCACACTCCTCCCTTTTATACGTGAAATACTCTGCCACAGTGACAGAGTATTTCACGTATGCTTAGGGAACCGATATCCAAATCCCAAAATGAAGCTAAGAAGTATACAGTACTCCGGCTACTCATCTTAATCTGAGACTAAACACTTTTTAACCTACAACCTGTCCCTGCTCTGGTTTCTAGCTTGAATTGTGTCACTACAGTACTTTGTTTTAGAATTCTGGCCATCAATGAACTCTAAGTAGGTACTCTCCCAATGGGATGCCCACCAAAAATATTGACGAGTCATGGTTGAAAGAAACCAAAACCAGTATGGGTGCTTCAACACATTCAGTTCTAGCTGAGATGTCAGATCACTATTTGAATTGTTTGGGTTTGGGATATTTTTTGGATGGTCTACATTTTATCAAATGCTGCTGCTTTGTAGTTCATATCAAACATACTATTAAAGTAATTTCTATGGCTGTAGGAGTCAGTTGGAATGGAATCATGGAAGAAGTTGACACTCAAGGATCTGTACAAGAGGATGGCCCAACCGAGATTGAGATTGAATGA

mRNA sequence

ATGGCGGGTCTTCTTCAACACTCCACTTCAACTGCCAGCGTTCTGGGAACGGAATCATATCTCGATTTTATTATCCAAAAAACCTATGCTGCCACTGGCAGCTATCTTCTTCTCGCCTGCAATAGTTCTACAAATGGCATCTGCGCATTTTTCTTCAATCCTGCAGAGGATCTCGTTATCAAAGAAGCTCTCAAGATGTCAGATCACTATTTGAATTGTTTGGGTTTGGGATATTTTTTGGATGGTCTACATTTTATCAAATGCTGCTGCTTTGTAGTTCATATCAAACATACTATTAAAGTAATTTCTATGGCTGTAGGAGTCAGTTGGAATGGAATCATGGAAGAAGTTGACACTCAAGGATCTGTACAAGAGGATGGCCCAACCGAGATTGAGATTGAATGA

Coding sequence (CDS)

ATGGCGGGTCTTCTTCAACACTCCACTTCAACTGCCAGCGTTCTGGGAACGGAATCATATCTCGATTTTATTATCCAAAAAACCTATGCTGCCACTGGCAGCTATCTTCTTCTCGCCTGCAATAGTTCTACAAATGGCATCTGCGCATTTTTCTTCAATCCTGCAGAGGATCTCGTTATCAAAGAAGCTCTCAAGATGTCAGATCACTATTTGAATTGTTTGGGTTTGGGATATTTTTTGGATGGTCTACATTTTATCAAATGCTGCTGCTTTGTAGTTCATATCAAACATACTATTAAAGTAATTTCTATGGCTGTAGGAGTCAGTTGGAATGGAATCATGGAAGAAGTTGACACTCAAGGATCTGTACAAGAGGATGGCCCAACCGAGATTGAGATTGAATGA

Protein sequence

MAGLLQHSTSTASVLGTESYLDFIIQKTYAATGSYLLLACNSSTNGICAFFFNPAEDLVIKEALKMSDHYLNCLGLGYFLDGLHFIKCCCFVVHIKHTIKVISMAVGVSWNGIMEEVDTQGSVQEDGPTEIEIE

Homology

[Close]

BLAST of Tan0009186 vs. NCBI nr
Match: XP_023518976.1 (UPF0426 protein At1g28150, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 88.2 bits (217), Expect = 5.9e-14
Identity = 65/140 (46.43%), Postives = 74/140 (52.86%), Query Frame = 0


Query: 1   MAGLLQHSTSTASVL------GTESYLDFIIQKTYAATGSYLLLACNSSTNGICAFFFNP 60
           MAGLL HS+STASVL        E     I         + L L C++STNGICAF FNP
Sbjct: 1   MAGLLLHSSSTASVLLGGMGKFREGNRHLIFSPKKPMRANCLRLGCSNSTNGICAFLFNP 60

Query: 61  AEDLVIKEALKMSDHYLNCLGLGYFLDGLHFIKCCCFVVHIKHTIKVISMAVGVSWNGIM 120
            ED V+KEALK    +   L  G     L+          +K  +K       V   GI 
Sbjct: 61  LEDPVVKEALKEPVAFAGGLFAGLLRLDLN-------EDPLKEWVKKT-----VESAGIT 120

Query: 121 EEVDTQGSVQEDGPTEIEIE 135
           EEVDTQGSVQEDGPTEIEIE
Sbjct: 121 EEVDTQGSVQEDGPTEIEIE 128

[Close]

BLAST of Tan0009186 vs. NCBI nr
Match: XP_022924196.1 (UPF0426 protein At1g28150, chloroplastic [Cucurbita moschata])

HSP 1 Score: 87.4 bits (215), Expect = 1.0e-13
Identity = 65/140 (46.43%), Postives = 74/140 (52.86%), Query Frame = 0


Query: 1   MAGLLQHSTSTASVL------GTESYLDFIIQKTYAATGSYLLLACNSSTNGICAFFFNP 60
           MAGLL HS+STASVL        E     I         + L L C++STNGICAF FNP
Sbjct: 1   MAGLLLHSSSTASVLLGGMGKFREGNRHSIFSPKKPMRANRLRLGCSNSTNGICAFLFNP 60

Query: 61  AEDLVIKEALKMSDHYLNCLGLGYFLDGLHFIKCCCFVVHIKHTIKVISMAVGVSWNGIM 120
            ED V+KEALK    +   L  G     L+          +K  +K       V   GI 
Sbjct: 61  LEDPVVKEALKEPVAFAGGLFAGLLRLDLN-------EDPLKEWVKKT-----VESAGIT 120

Query: 121 EEVDTQGSVQEDGPTEIEIE 135
           EEVDTQGSVQEDGPTEIEIE
Sbjct: 121 EEVDTQGSVQEDGPTEIEIE 128

[Close]

BLAST of Tan0009186 vs. NCBI nr
Match: KAG7020036.1 (UPF0426 protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 84.7 bits (208), Expect = 6.5e-13
Identity = 64/140 (45.71%), Postives = 73/140 (52.14%), Query Frame = 0


Query: 1   MAGLLQHSTSTASVL------GTESYLDFIIQKTYAATGSYLLLACNSSTNGICAFFFNP 60
           MAGLL HS+STASVL        E     I         + L L C++STN ICAF FNP
Sbjct: 1   MAGLLLHSSSTASVLLGGMGKFREGNRHSIFTPKKPMRANCLRLGCSNSTNAICAFLFNP 60

Query: 61  AEDLVIKEALKMSDHYLNCLGLGYFLDGLHFIKCCCFVVHIKHTIKVISMAVGVSWNGIM 120
            ED V+KEALK    +   L  G     L+          +K  +K       V   GI 
Sbjct: 61  LEDPVVKEALKEPVAFAGGLFAGLLRLDLN-------EDPLKEWVKKT-----VESAGIT 120

Query: 121 EEVDTQGSVQEDGPTEIEIE 135
           EEVDTQGSVQEDGPTEIEIE
Sbjct: 121 EEVDTQGSVQEDGPTEIEIE 128

[Close]

BLAST of Tan0009186 vs. NCBI nr
Match: XP_008439829.1 (PREDICTED: UPF0426 protein At1g28150, chloroplastic [Cucumis melo] >KAA0036065.1 UPF0426 protein [Cucumis melo var. makuwa] >TYJ98872.1 UPF0426 protein [Cucumis melo var. makuwa])

HSP 1 Score: 84.0 bits (206), Expect = 1.1e-12
Identity = 64/140 (45.71%), Postives = 74/140 (52.86%), Query Frame = 0


Query: 1   MAGLLQHSTSTASVLGTE------SYLDFIIQKTYAATGSYLLLACNSSTNGICAFFFNP 60
           MA LL HS+STASVL  E           I+        S+L L  N+STNGI AFFFNP
Sbjct: 1   MAALLLHSSSTASVLFGEMGKLKARSHHSILSSKKPMRSSFLRLGSNNSTNGISAFFFNP 60

Query: 61  AEDLVIKEALKMSDHYLNCLGLGYFLDGLHFIKCCCFVVHIKHTIKVISMAVGVSWNGIM 120
            ED V+KEALK    +   L  G     L+          +K  +K       V   G+ 
Sbjct: 61  VEDPVLKEALKEPVAFAGGLFAGLLRLDLN-------EDPLKEWVKKT-----VESAGLT 120

Query: 121 EEVDTQGSVQEDGPTEIEIE 135
           EEVDTQGSVQEDGPTEIEIE
Sbjct: 121 EEVDTQGSVQEDGPTEIEIE 128

[Close]

BLAST of Tan0009186 vs. NCBI nr
Match: XP_038893812.1 (UPF0426 protein At1g28150, chloroplastic [Benincasa hispida])

HSP 1 Score: 83.2 bits (204), Expect = 1.9e-12
Identity = 61/140 (43.57%), Postives = 73/140 (52.14%), Query Frame = 0


Query: 1   MAGLLQHSTSTASVLGTE------SYLDFIIQKTYAATGSYLLLACNSSTNGICAFFFNP 60
           MA LL HS+S  SVL  E           I+       G++L L CN+ TNGI AFFFNP
Sbjct: 1   MAALLLHSSSATSVLFGEMGKLKGRNHHSILSSDKPVRGNFLRLRCNNPTNGISAFFFNP 60

Query: 61  AEDLVIKEALKMSDHYLNCLGLGYFLDGLHFIKCCCFVVHIKHTIKVISMAVGVSWNGIM 120
            ED V+KEALK    +   L  G     L+          +K  +K       V   G+ 
Sbjct: 61  VEDPVLKEALKEPVAFAGGLFAGLLRLDLN-------EDPLKEWVKKT-----VESAGLT 120

Query: 121 EEVDTQGSVQEDGPTEIEIE 135
           EE+DTQGSVQEDGPTEIEIE
Sbjct: 121 EEIDTQGSVQEDGPTEIEIE 128

[Close]

BLAST of Tan0009186 vs. ExPASy TrEMBL
Match: A0A6J1E8W6 (UPF0426 protein At1g28150, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111431718 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 4.9e-14
Identity = 65/140 (46.43%), Postives = 74/140 (52.86%), Query Frame = 0


Query: 1   MAGLLQHSTSTASVL------GTESYLDFIIQKTYAATGSYLLLACNSSTNGICAFFFNP 60
           MAGLL HS+STASVL        E     I         + L L C++STNGICAF FNP
Sbjct: 1   MAGLLLHSSSTASVLLGGMGKFREGNRHSIFSPKKPMRANRLRLGCSNSTNGICAFLFNP 60

Query: 61  AEDLVIKEALKMSDHYLNCLGLGYFLDGLHFIKCCCFVVHIKHTIKVISMAVGVSWNGIM 120
            ED V+KEALK    +   L  G     L+          +K  +K       V   GI 
Sbjct: 61  LEDPVVKEALKEPVAFAGGLFAGLLRLDLN-------EDPLKEWVKKT-----VESAGIT 120

Query: 121 EEVDTQGSVQEDGPTEIEIE 135
           EEVDTQGSVQEDGPTEIEIE
Sbjct: 121 EEVDTQGSVQEDGPTEIEIE 128

[Close]

BLAST of Tan0009186 vs. ExPASy TrEMBL
Match: A0A5D3BGH6 (UPF0426 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00680 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 5.4e-13
Identity = 64/140 (45.71%), Postives = 74/140 (52.86%), Query Frame = 0


Query: 1   MAGLLQHSTSTASVLGTE------SYLDFIIQKTYAATGSYLLLACNSSTNGICAFFFNP 60
           MA LL HS+STASVL  E           I+        S+L L  N+STNGI AFFFNP
Sbjct: 1   MAALLLHSSSTASVLFGEMGKLKARSHHSILSSKKPMRSSFLRLGSNNSTNGISAFFFNP 60

Query: 61  AEDLVIKEALKMSDHYLNCLGLGYFLDGLHFIKCCCFVVHIKHTIKVISMAVGVSWNGIM 120
            ED V+KEALK    +   L  G     L+          +K  +K       V   G+ 
Sbjct: 61  VEDPVLKEALKEPVAFAGGLFAGLLRLDLN-------EDPLKEWVKKT-----VESAGLT 120

Query: 121 EEVDTQGSVQEDGPTEIEIE 135
           EEVDTQGSVQEDGPTEIEIE
Sbjct: 121 EEVDTQGSVQEDGPTEIEIE 128

[Close]

BLAST of Tan0009186 vs. ExPASy TrEMBL
Match: A0A1S3AZP7 (UPF0426 protein At1g28150, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484480 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 5.4e-13
Identity = 64/140 (45.71%), Postives = 74/140 (52.86%), Query Frame = 0


Query: 1   MAGLLQHSTSTASVLGTE------SYLDFIIQKTYAATGSYLLLACNSSTNGICAFFFNP 60
           MA LL HS+STASVL  E           I+        S+L L  N+STNGI AFFFNP
Sbjct: 1   MAALLLHSSSTASVLFGEMGKLKARSHHSILSSKKPMRSSFLRLGSNNSTNGISAFFFNP 60

Query: 61  AEDLVIKEALKMSDHYLNCLGLGYFLDGLHFIKCCCFVVHIKHTIKVISMAVGVSWNGIM 120
            ED V+KEALK    +   L  G     L+          +K  +K       V   G+ 
Sbjct: 61  VEDPVLKEALKEPVAFAGGLFAGLLRLDLN-------EDPLKEWVKKT-----VESAGLT 120

Query: 121 EEVDTQGSVQEDGPTEIEIE 135
           EEVDTQGSVQEDGPTEIEIE
Sbjct: 121 EEVDTQGSVQEDGPTEIEIE 128

[Close]

BLAST of Tan0009186 vs. ExPASy TrEMBL
Match: A0A6J1KGM3 (UPF0426 protein At1g28150, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111495083 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.2e-12
Identity = 63/140 (45.00%), Postives = 71/140 (50.71%), Query Frame = 0


Query: 1   MAGLLQHSTSTASVL------GTESYLDFIIQKTYAATGSYLLLACNSSTNGICAFFFNP 60
           MAGLL HS+STA VL        E     I         + L L CN+STN ICAF F P
Sbjct: 1   MAGLLLHSSSTACVLLGGMGKFREGNRHSIFSPKKPMRANCLRLGCNNSTNAICAFLFTP 60

Query: 61  AEDLVIKEALKMSDHYLNCLGLGYFLDGLHFIKCCCFVVHIKHTIKVISMAVGVSWNGIM 120
            ED V+KEALK    +   L  G     L+          +K  +K       V   GI 
Sbjct: 61  LEDPVVKEALKEPVAFAGGLFAGLLRLDLN-------EDPLKEWVKKT-----VESAGIT 120

Query: 121 EEVDTQGSVQEDGPTEIEIE 135
           EEVDTQGSVQEDGPTEIEIE
Sbjct: 121 EEVDTQGSVQEDGPTEIEIE 128

[Close]

BLAST of Tan0009186 vs. ExPASy TrEMBL
Match: A0A0A0LT92 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G032470 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 4.5e-12
Identity = 62/140 (44.29%), Postives = 73/140 (52.14%), Query Frame = 0


Query: 1   MAGLLQHSTSTASVLGTE------SYLDFIIQKTYAATGSYLLLACNSSTNGICAFFFNP 60
           MA LL HS+STASVL  E         + I+        S+  L  N+STNGI AFFFNP
Sbjct: 1   MAALLLHSSSTASVLFGEMGKLKGRNHNSILSSKKPVRSSFFRLGSNNSTNGISAFFFNP 60

Query: 61  AEDLVIKEALKMSDHYLNCLGLGYFLDGLHFIKCCCFVVHIKHTIKVISMAVGVSWNGIM 120
             D V+KEALK    +   L  G     L+          +K  +K       V   G+ 
Sbjct: 61  VGDPVLKEALKEPVAFAGGLFAGLLRLDLN-------EDPLKEWVKKT-----VESAGLR 120

Query: 121 EEVDTQGSVQEDGPTEIEIE 135
           EEVDTQGSVQEDGPTEIEIE
Sbjct: 121 EEVDTQGSVQEDGPTEIEIE 128

The following BLAST results are available for this feature:

BLAST of Tan0009186 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0009186 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023518976.1	5.9e-14	46.43	UPF0426 protein At1g28150, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022924196.1	1.0e-13	46.43	UPF0426 protein At1g28150, chloroplastic [Cucurbita moschata]	[more]
KAG7020036.1	6.5e-13	45.71	UPF0426 protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_008439829.1	1.1e-12	45.71	PREDICTED: UPF0426 protein At1g28150, chloroplastic [Cucumis melo] >KAA0036065.1...	[more]
XP_038893812.1	1.9e-12	43.57	UPF0426 protein At1g28150, chloroplastic [Benincasa hispida]	[more]

BLAST of Tan0009186 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E8W6	4.9e-14	46.43	UPF0426 protein At1g28150, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A5D3BGH6	5.4e-13	45.71	UPF0426 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G0068...	[more]
A0A1S3AZP7	5.4e-13	45.71	UPF0426 protein At1g28150, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484480...	[more]
A0A6J1KGM3	1.2e-12	45.00	UPF0426 protein At1g28150, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A0A0LT92	4.5e-12	44.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G032470 PE=4 SV=1	[more]

BLAST of Tan0009186 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0009186.1	Tan0009186.1	mRNA