Tan0009136 (gene) Snake gourd v1

Overview


Name	Tan0009136
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	tRNA-specific 2-thiouridylase
Location	LG08: 7370838 .. 7371164 (-)
RNA-Seq Expression	Tan0009136
Synteny	Tan0009136

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTGTATGGAGATTGCTGGCGTTAGAGGATGTCGGTGGCATCAATATGAGAAGCTATACAATGGTGGTAATAGAGTGGTCAAGCGTAGACGTCGATGGATGAAGAAAATATTGAAGAGAGGAATGAAAGGTTTTCGGTTGTATCGTCCTACAAAATTACCTACACTTAATTTGAAGGTATCCTTTTTAATCTTGTTGTCGAGAAGAATTAGAGAGATTGTTAATAGAATGAAGATTGAAGATGTATGTCCTAATATCATCTTCTCCACTCAATGGGGACTTCCTGTTTTATCTTATTCATCTTCCAAGTATTTGTTGCCTTGA

mRNA sequence

ATGAGTTGTATGGAGATTGCTGGCGTTAGAGGATGTCGGTGGCATCAATATGAGAAGCTATACAATGGTGGTAATAGAGTGGTCAAGCGTAGACGTCGATGGATGAAGAAAATATTGAAGAGAGGAATGAAAGGTTTTCGGTTGTATCGTCCTACAAAATTACCTACACTTAATTTGAAGGTATCCTTTTTAATCTTGTTGTCGAGAAGAATTAGAGAGATTGTTAATAGAATGAAGATTGAAGATGTATGTCCTAATATCATCTTCTCCACTCAATGGGGACTTCCTGTTTTATCTTATTCATCTTCCAAGTATTTGTTGCCTTGA

Coding sequence (CDS)

ATGAGTTGTATGGAGATTGCTGGCGTTAGAGGATGTCGGTGGCATCAATATGAGAAGCTATACAATGGTGGTAATAGAGTGGTCAAGCGTAGACGTCGATGGATGAAGAAAATATTGAAGAGAGGAATGAAAGGTTTTCGGTTGTATCGTCCTACAAAATTACCTACACTTAATTTGAAGGTATCCTTTTTAATCTTGTTGTCGAGAAGAATTAGAGAGATTGTTAATAGAATGAAGATTGAAGATGTATGTCCTAATATCATCTTCTCCACTCAATGGGGACTTCCTGTTTTATCTTATTCATCTTCCAAGTATTTGTTGCCTTGA

Protein sequence

MSCMEIAGVRGCRWHQYEKLYNGGNRVVKRRRRWMKKILKRGMKGFRLYRPTKLPTLNLKVSFLILLSRRIREIVNRMKIEDVCPNIIFSTQWGLPVLSYSSSKYLLP

Homology

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BLAST of Tan0009136 vs. NCBI nr
Match: KAG6599155.1 (Transmembrane protein 184A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 145.6 bits (366), Expect = 2.5e-31
Identity = 74/107 (69.16%), Postives = 85/107 (79.44%), Query Frame = 0


Query: 1   MSCMEIAGVRGCRWHQYEKLYNGGNRVVKRRRRWMKKILKRGMKGFRLYRPTKLPTLNLK 60
           M  +E AG+ G RW+QYEKL+   N VVK RRRWMKK LKRG KGFRLYR T+  +  LK
Sbjct: 452 MGLLETAGIGGRRWNQYEKLHCEDNDVVKCRRRWMKKTLKRGKKGFRLYRLTRSRSFCLK 511

Query: 61  VSFLILLSRRIREIVNRMKIEDVCPNIIFSTQWGLPVLSYSSSKYLL 108
           VSFL+L+SRRIREIVNRMK+EDVC N+IF TQWGLP LSY+SS  LL
Sbjct: 512 VSFLVLMSRRIREIVNRMKVEDVCANVIFFTQWGLPTLSYNSSSSLL 558

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BLAST of Tan0009136 vs. NCBI nr
Match: KGN61039.1 (hypothetical protein Csa_021124 [Cucumis sativus])

HSP 1 Score: 135.6 bits (340), Expect = 2.6e-28
Identity = 76/105 (72.38%), Postives = 87/105 (82.86%), Query Frame = 0


Query: 1   MSCMEIAGVRGCRWH-QYEKLYNGGNR--VVKRRRRWMKKILKRGMKGFRLYRPTKL-PT 60
           MS +EIAG+ G RW   YEKL +GG+   VV RRRRW+KK+LKRGMKGFRLYR T+L  +
Sbjct: 1   MSLLEIAGIGGRRWECHYEKLNSGGSNRVVVMRRRRWVKKMLKRGMKGFRLYRFTRLKSS 60

Query: 61  LNLKVSFLILLSRRIREIVNRMK-IEDVCPNIIFSTQWGLPVLSY 101
             LKVSFL+ LSRRIREIV+RMK +EDVCPNIIFSTQWGLPVLSY
Sbjct: 61  FGLKVSFLMSLSRRIREIVSRMKVVEDVCPNIIFSTQWGLPVLSY 105

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BLAST of Tan0009136 vs. NCBI nr
Match: KAA0056096.1 (hypothetical protein E6C27_scaffold323G00580 [Cucumis melo var. makuwa] >TYJ96421.1 hypothetical protein E5676_scaffold546G00490 [Cucumis melo var. makuwa])

HSP 1 Score: 131.7 bits (330), Expect = 3.7e-27
Identity = 77/109 (70.64%), Postives = 86/109 (78.90%), Query Frame = 0


Query: 1   MSCMEIAGVRGCRWH-QYEKLYNGG---NRVV---KRRRRWMKKILKRGMKGFRLYRPTK 60
           M  +EIAG+ G RW   YEKL + G   NRVV    RRRRW+KK+LKRGMKGFRLYR T+
Sbjct: 1   MGLLEIAGIGGRRWECHYEKLNSSGGSNNRVVVIIMRRRRWIKKMLKRGMKGFRLYRFTR 60

Query: 61  L-PTLNLKVSFLILLSRRIREIVNRMK-IEDVCPNIIFSTQWGLPVLSY 101
           L  +  LKVSFL+ LSRRIREIVNRMK +EDVCPNIIFSTQWGLPVLSY
Sbjct: 61  LRSSFGLKVSFLMSLSRRIREIVNRMKFVEDVCPNIIFSTQWGLPVLSY 109

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BLAST of Tan0009136 vs. NCBI nr
Match: KAF3454760.1 (hypothetical protein FNV43_RR05208 [Rhamnella rubrinervis])

HSP 1 Score: 77.8 bits (190), Expect = 6.4e-11
Identity = 53/106 (50.00%), Postives = 66/106 (62.26%), Query Frame = 0


Query: 5   EIAGVRGCRWHQYEKLYNG--GNRVVKRRRRWMKKILKRGMKGFRLYRPTKLPTLNLKVS 64
           EI G  G   H+YEKL +     +  +    W+KK+  R +KG RL RP K   L LKV 
Sbjct: 10  EIGG--GGMRHRYEKLSSSMMNEKTARPGSHWVKKMNGR-LKGLRLCRPRK---LTLKVF 69

Query: 65  FLILLSRRI----REIVNRMKIEDVCPNIIFSTQWGLPVLSYSSSK 105
            +++LS RI     E+VNRMKI+ VCPNI FSTQWGLPVLS+ S K
Sbjct: 70  SVVVLSSRIARIYSEVVNRMKIDGVCPNINFSTQWGLPVLSHPSVK 109

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BLAST of Tan0009136 vs. NCBI nr
Match: EXB57573.1 (hypothetical protein L484_022680 [Morus notabilis])

HSP 1 Score: 75.9 bits (185), Expect = 2.4e-10
Identity = 54/109 (49.54%), Postives = 67/109 (61.47%), Query Frame = 0


Query: 1   MSCMEIAGVR-GCRWHQYEKLYNGGNRVVKRRRRWMKKILKRGMKGFRLYRPTKLPTLNL 60
           M   +I GVR  CR   YE+L N   +V K  R W+KK   + +KG RL R  K   L L
Sbjct: 4   MGFQDIIGVRLRCR---YERLSNIDEKVTKPGRCWVKKTNGK-LKGLRLSRSRK---LTL 63

Query: 61  KVSFLILLSRRI----REIVNRMKIEDVCPNIIFSTQWGLPVLSYSSSK 105
           KV  +++ + RI     EIVNRM I+ V PNIIF+TQWGLPVLS+SS K
Sbjct: 64  KVFSVVVFTNRIARIYNEIVNRMSIDGVHPNIIFTTQWGLPVLSHSSVK 105

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BLAST of Tan0009136 vs. ExPASy TrEMBL
Match: A0A0A0LJ29 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G035390 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.3e-28
Identity = 76/105 (72.38%), Postives = 87/105 (82.86%), Query Frame = 0


Query: 1   MSCMEIAGVRGCRWH-QYEKLYNGGNR--VVKRRRRWMKKILKRGMKGFRLYRPTKL-PT 60
           MS +EIAG+ G RW   YEKL +GG+   VV RRRRW+KK+LKRGMKGFRLYR T+L  +
Sbjct: 1   MSLLEIAGIGGRRWECHYEKLNSGGSNRVVVMRRRRWVKKMLKRGMKGFRLYRFTRLKSS 60

Query: 61  LNLKVSFLILLSRRIREIVNRMK-IEDVCPNIIFSTQWGLPVLSY 101
             LKVSFL+ LSRRIREIV+RMK +EDVCPNIIFSTQWGLPVLSY
Sbjct: 61  FGLKVSFLMSLSRRIREIVSRMKVVEDVCPNIIFSTQWGLPVLSY 105

[Close]

BLAST of Tan0009136 vs. ExPASy TrEMBL
Match: A0A5D3BCS3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G00490 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.8e-27
Identity = 77/109 (70.64%), Postives = 86/109 (78.90%), Query Frame = 0


Query: 1   MSCMEIAGVRGCRWH-QYEKLYNGG---NRVV---KRRRRWMKKILKRGMKGFRLYRPTK 60
           M  +EIAG+ G RW   YEKL + G   NRVV    RRRRW+KK+LKRGMKGFRLYR T+
Sbjct: 1   MGLLEIAGIGGRRWECHYEKLNSSGGSNNRVVVIIMRRRRWIKKMLKRGMKGFRLYRFTR 60

Query: 61  L-PTLNLKVSFLILLSRRIREIVNRMK-IEDVCPNIIFSTQWGLPVLSY 101
           L  +  LKVSFL+ LSRRIREIVNRMK +EDVCPNIIFSTQWGLPVLSY
Sbjct: 61  LRSSFGLKVSFLMSLSRRIREIVNRMKFVEDVCPNIIFSTQWGLPVLSY 109

[Close]

BLAST of Tan0009136 vs. ExPASy TrEMBL
Match: W9R5R9 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_022680 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.2e-10
Identity = 54/109 (49.54%), Postives = 67/109 (61.47%), Query Frame = 0


Query: 1   MSCMEIAGVR-GCRWHQYEKLYNGGNRVVKRRRRWMKKILKRGMKGFRLYRPTKLPTLNL 60
           M   +I GVR  CR   YE+L N   +V K  R W+KK   + +KG RL R  K   L L
Sbjct: 4   MGFQDIIGVRLRCR---YERLSNIDEKVTKPGRCWVKKTNGK-LKGLRLSRSRK---LTL 63

Query: 61  KVSFLILLSRRI----REIVNRMKIEDVCPNIIFSTQWGLPVLSYSSSK 105
           KV  +++ + RI     EIVNRM I+ V PNIIF+TQWGLPVLS+SS K
Sbjct: 64  KVFSVVVFTNRIARIYNEIVNRMSIDGVHPNIIFTTQWGLPVLSHSSVK 105

[Close]

BLAST of Tan0009136 vs. ExPASy TrEMBL
Match: A0A6A1UJJ6 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR0G008822 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.7e-09
Identity = 45/103 (43.69%), Postives = 63/103 (61.17%), Query Frame = 0


Query: 1   MSCMEIAGVRGCRWHQYEKLYNGGNRVVKRRRRWMKKILKRGMKGFRLYRPTKLPTLNLK 60
           M   ++ G R  +W +Y+KL N   +V + RRRW++K+  R +KG RL RP KL      
Sbjct: 1   MGFQDLVGGR-LKW-RYKKLTNTDEKVARPRRRWVQKMNGR-LKGLRLTRPRKLTLKAFS 60

Query: 61  VSFL-ILLSRRIREIVNRMKIEDVCPNIIFSTQWGLPVLSYSS 103
           +  L I ++R   +I NRM  + VCP IIF  QWGLPVLS++S
Sbjct: 61  MMVLQIRIARIYADIANRMNTDGVCPAIIFPNQWGLPVLSHAS 100

[Close]

BLAST of Tan0009136 vs. ExPASy TrEMBL
Match: A0A2C9VF51 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_08G106000 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.9e-09
Identity = 46/92 (50.00%), Postives = 61/92 (66.30%), Query Frame = 0


Query: 15  HQYEKLYNGGNRVVK-RRRRWMKKILKRGMKGFRLYRPTKLPTLNLKVSFL-ILLSRRIR 74
           ++YEKL +   ++ K RRR W+KK L  G+KG RL R  KL    L V  L   ++R   
Sbjct: 13  YRYEKLISSDEKLAKSRRRSWVKK-LNGGLKGLRLSRSRKLTFKALSVMVLPSRIARVYA 72

Query: 75  EIVNRMKIEDVCPNIIFSTQWGLPVLSYSSSK 105
           +I++R+KIED+ PNIIFSTQ GLPVLS+ S K
Sbjct: 73  DIISRIKIEDLYPNIIFSTQLGLPVLSHPSVK 103

The following BLAST results are available for this feature:

BLAST of Tan0009136 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0009136 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6599155.1	2.5e-31	69.16	Transmembrane protein 184A, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KGN61039.1	2.6e-28	72.38	hypothetical protein Csa_021124 [Cucumis sativus]	[more]
KAA0056096.1	3.7e-27	70.64	hypothetical protein E6C27_scaffold323G00580 [Cucumis melo var. makuwa] >TYJ9642...	[more]
KAF3454760.1	6.4e-11	50.00	hypothetical protein FNV43_RR05208 [Rhamnella rubrinervis]	[more]
EXB57573.1	2.4e-10	49.54	hypothetical protein L484_022680 [Morus notabilis]	[more]

BLAST of Tan0009136 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJ29	1.3e-28	72.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G035390 PE=4 SV=1	[more]
A0A5D3BCS3	1.8e-27	70.64	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
W9R5R9	1.2e-10	49.54	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_022680 PE=4 SV=1	[more]
A0A6A1UJJ6	1.7e-09	43.69	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR0G008822 PE=4 SV=1	[more]
A0A2C9VF51	2.9e-09	50.00	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_08G106000 PE=4 SV=...	[more]

BLAST of Tan0009136 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35123:SF3	OS07G0633900 PROTEIN	coord: 16..104
None	No IPR available	PANTHER	PTHR35123	OS07G0633900 PROTEIN-RELATED	coord: 16..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0009136.1	Tan0009136.1	mRNA